RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 NFKBIEO00221 500 aa19.35■□□□□ 0.69
SDC3-203ENST00000471567 PPEF1O14829 653 aaPredicted RBP19.35■□□□□ 0.69
SDC3-203ENST00000471567 IPO8O15397 1037 aaKnown RBP19.35■□□□□ 0.69
SDC3-203ENST00000471567 TMC4Q7Z404 712 aa19.35■□□□□ 0.69
SDC3-203ENST00000471567 UTRNP46939 3433 aa19.35■□□□□ 0.69
SDC3-203ENST00000471567 CACNA1SQ13698 1873 aa19.35■□□□□ 0.69
SDC3-203ENST00000471567 GRM8O00222 908 aa19.34■□□□□ 0.69
SDC3-203ENST00000471567 CTSWP56202 376 aa19.34■□□□□ 0.69
SDC3-203ENST00000471567 TMX4Q9H1E5 349 aaPredicted RBP19.34■□□□□ 0.69
SDC3-203ENST00000471567 C9orf78Q9NZ63 289 aaPredicted RBP19.34■□□□□ 0.69
SDC3-203ENST00000471567 ATP6V0A2Q9Y487 856 aa19.34■□□□□ 0.69
SDC3-203ENST00000471567 BCAR3O75815 825 aa19.33■□□□□ 0.68
SDC3-203ENST00000471567 LMNB1P20700 586 aa19.33■□□□□ 0.68
SDC3-203ENST00000471567 RASSF7Q02833 373 aa19.33■□□□□ 0.68
SDC3-203ENST00000471567 SP8Q8IXZ3 490 aa19.33■□□□□ 0.68
SDC3-203ENST00000471567 TTLL11Q8NHH1 800 aa19.33■□□□□ 0.68
SDC3-203ENST00000471567 TAOK3Q9H2K8 898 aa19.33■□□□□ 0.68
SDC3-203ENST00000471567 CCT4P50991 539 aaKnown RBP19.32■□□□□ 0.68
SDC3-203ENST00000471567 C9orf131Q5VYM1 1079 aa19.32■□□□□ 0.68
SDC3-203ENST00000471567 FER1L6Q2WGJ9 1857 aa19.32■□□□□ 0.68
SDC3-203ENST00000471567 RTL9Q8NET4 1388 aa19.32■□□□□ 0.68
SDC3-203ENST00000471567 UTYO14607 1347 aa19.31■□□□□ 0.68
SDC3-203ENST00000471567 CSF1RP07333 972 aa19.31■□□□□ 0.68
SDC3-203ENST00000471567 RPS8P62241 208 aaKnown RBP19.31■□□□□ 0.68
SDC3-203ENST00000471567 FKBP4Q02790 459 aaKnown RBP eCLIP19.31■□□□□ 0.68
SDC3-203ENST00000471567 OLFM4Q6UX06 510 aa19.31■□□□□ 0.68
SDC3-203ENST00000471567 CELF1Q92879 486 aaKnown RBP19.31■□□□□ 0.68
SDC3-203ENST00000471567 PSMD1Q99460 953 aa19.31■□□□□ 0.68
SDC3-203ENST00000471567 SEC31BQ9NQW1 1179 aa19.3■□□□□ 0.68
SDC3-203ENST00000471567 RNF181Q9P0P0 153 aa19.3■□□□□ 0.68
SDC3-203ENST00000471567 SNED1Q8TER0 1413 aa19.3■□□□□ 0.68
SDC3-203ENST00000471567 SBF1O95248 1867 aa19.29■□□□□ 0.68
SDC3-203ENST00000471567 PRELPP51888 382 aa19.29■□□□□ 0.68
SDC3-203ENST00000471567 ATF7IPQ6VMQ6 1270 aa19.29■□□□□ 0.68
SDC3-203ENST00000471567 CDC5LQ99459 802 aaKnown RBP19.29■□□□□ 0.68
SDC3-203ENST00000471567 ZC3H4Q9UPT8 1303 aaKnown RBP19.28■□□□□ 0.68
SDC3-203ENST00000471567 MYH3P11055 1940 aa19.28■□□□□ 0.68
SDC3-203ENST00000471567 NBPF7P0C2Y1 421 aaPredicted RBP19.28■□□□□ 0.68
SDC3-203ENST00000471567 FOXO4P98177 505 aa19.28■□□□□ 0.68
SDC3-203ENST00000471567 ZKSCAN2Q63HK3 967 aa19.28■□□□□ 0.68
SDC3-203ENST00000471567 FRAT1Q92837 279 aaPredicted RBP19.28■□□□□ 0.68
SDC3-203ENST00000471567 CCDC85AQ96PX6 553 aaPredicted RBP19.28■□□□□ 0.68
SDC3-203ENST00000471567 USP44Q9H0E7 712 aa19.28■□□□□ 0.68
SDC3-203ENST00000471567 GREM2Q9H772 168 aa19.28■□□□□ 0.68
SDC3-203ENST00000471567 TRIM27P14373 513 aa19.27■□□□□ 0.68
SDC3-203ENST00000471567 INTS3Q68E01 1043 aaKnown RBP19.27■□□□□ 0.68
SDC3-203ENST00000471567 ANKRD18AQ8IVF6 992 aa19.27■□□□□ 0.68
SDC3-203ENST00000471567 MPNDQ8N594 471 aa19.26■□□□□ 0.67
SDC3-203ENST00000471567 SUPT20HQ8NEM7 779 aa19.26■□□□□ 0.67
SDC3-203ENST00000471567 RTFDC1Q9BY42 306 aaPredicted RBP19.26■□□□□ 0.67
SDC3-203ENST00000471567 VPS33BQ9H267 617 aa19.26■□□□□ 0.67
SDC3-203ENST00000471567 TAF1P21675 1872 aa19.26■□□□□ 0.67
SDC3-203ENST00000471567 EPHA10Q5JZY3 1008 aa19.25■□□□□ 0.67
SDC3-203ENST00000471567 DPP8Q6V1X1 898 aaPredicted RBP19.25■□□□□ 0.67
SDC3-203ENST00000471567 ZNF784Q8NCA9 323 aaPredicted RBP19.25■□□□□ 0.67
SDC3-203ENST00000471567 SUCLG2Q96I99 432 aa19.25■□□□□ 0.67
SDC3-203ENST00000471567 ITGA6P23229 1130 aa19.24■□□□□ 0.67
SDC3-203ENST00000471567 IARSP41252 1262 aaKnown RBP19.24■□□□□ 0.67
SDC3-203ENST00000471567 FAM161AQ3B820 660 aa19.24■□□□□ 0.67
SDC3-203ENST00000471567 LMBR1LQ6UX01 489 aa19.24■□□□□ 0.67
SDC3-203ENST00000471567 SLC51AQ86UW1 340 aa19.24■□□□□ 0.67
SDC3-203ENST00000471567 KAZALD1Q96I82 304 aa19.24■□□□□ 0.67
SDC3-203ENST00000471567 ZNF277Q9NRM2 450 aaPredicted RBP19.24■□□□□ 0.67
SDC3-203ENST00000471567 BSDC1Q9NW68 430 aaPredicted RBP19.24■□□□□ 0.67
SDC3-203ENST00000471567 HDAC5Q9UQL6 1122 aa19.24■□□□□ 0.67
SDC3-203ENST00000471567 LRRC37AA6NMS7 1700 aa19.23■□□□□ 0.67
SDC3-203ENST00000471567 ANKRD18BA2A2Z9 1011 aa19.23■□□□□ 0.67
SDC3-203ENST00000471567 IGHMBP2P38935 993 aaKnown RBP19.23■□□□□ 0.67
SDC3-203ENST00000471567 IFIT5Q13325 482 aaKnown RBP19.23■□□□□ 0.67
SDC3-203ENST00000471567 RCAN3Q9UKA8 241 aa19.23■□□□□ 0.67
SDC3-203ENST00000471567 COL4A1P02462 1669 aa19.23■□□□□ 0.67
SDC3-203ENST00000471567 CCDC88AQ3V6T2 1871 aa19.22■□□□□ 0.67
SDC3-203ENST00000471567 RABL6Q3YEC7 729 aaPredicted RBP19.22■□□□□ 0.67
SDC3-203ENST00000471567 YTHDC1Q96MU7 727 aaKnown RBP19.22■□□□□ 0.67
SDC3-203ENST00000471567 PODXL2Q9NZ53 605 aa19.22■□□□□ 0.67
SDC3-203ENST00000471567 NSFL1CQ9UNZ2 370 aaKnown RBP19.22■□□□□ 0.67
SDC3-203ENST00000471567 CHMP3Q9Y3E7 222 aa19.22■□□□□ 0.67
SDC3-203ENST00000471567 DICER1Q9UPY3 1922 aaKnown RBP19.21■□□□□ 0.67
SDC3-203ENST00000471567 UBTFL1P0CB47 393 aaPredicted RBP19.21■□□□□ 0.67
SDC3-203ENST00000471567 GPSM2P81274 684 aa19.21■□□□□ 0.67
SDC3-203ENST00000471567 CCDC57Q2TAC2 916 aa19.21■□□□□ 0.67
SDC3-203ENST00000471567 CLUAP1Q96AJ1 413 aa19.21■□□□□ 0.67
SDC3-203ENST00000471567 ANKRD44Q8N8A2 993 aa19.2■□□□□ 0.66
SDC3-203ENST00000471567 MPHOSPH8Q99549 860 aa19.2■□□□□ 0.66
SDC3-203ENST00000471567 BICC1Q9H694 974 aaKnown RBP19.2■□□□□ 0.66
SDC3-203ENST00000471567 TNNQ9UQP3 1299 aa19.2■□□□□ 0.66
SDC3-203ENST00000471567 GNAI3P08754 354 aa19.19■□□□□ 0.66
SDC3-203ENST00000471567 DZIP1LQ8IYY4 767 aaKnown RBP19.19■□□□□ 0.66
SDC3-203ENST00000471567 LARGE2Q8N3Y3 721 aa19.19■□□□□ 0.66
SDC3-203ENST00000471567 JDP2Q8WYK2 163 aa19.19■□□□□ 0.66
SDC3-203ENST00000471567 ANKIB1Q9P2G1 1089 aa19.19■□□□□ 0.66
SDC3-203ENST00000471567 MINPP1Q9UNW1 487 aa19.19■□□□□ 0.66
SDC3-203ENST00000471567 PPIP5K2O43314 1243 aa19.18■□□□□ 0.66
SDC3-203ENST00000471567 MS4A1P11836 297 aa19.18■□□□□ 0.66
SDC3-203ENST00000471567 KIAA2012Q0VF49 1180 aa19.18■□□□□ 0.66
SDC3-203ENST00000471567 DPY19L2Q6NUT2 758 aa19.18■□□□□ 0.66
SDC3-203ENST00000471567 FTSJ3Q8IY81 847 aaKnown RBP19.18■□□□□ 0.66
SDC3-203ENST00000471567 TMEM57Q8N5G2 664 aa19.18■□□□□ 0.66
SDC3-203ENST00000471567 GPBP1L1Q9HC44 474 aaPredicted RBP19.18■□□□□ 0.66
SDC3-203ENST00000471567 XDHP47989 1333 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms