RNA–Protein interactions for RNA: ENST00000468949.1

HDAC6-216, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-216ENST00000468949 SERPINB2P05120 415 aa10.15□□□□□ -0.78
HDAC6-216ENST00000468949 IFNLR1Q8IU57 520 aaPredicted RBP10.15□□□□□ -0.78
HDAC6-216ENST00000468949 FAM89AQ96GI7 184 aa10.15□□□□□ -0.78
HDAC6-216ENST00000468949 LRRFIP2Q9Y608 721 aaKnown RBP10.15□□□□□ -0.78
HDAC6-216ENST00000468949 COL11A2P13942 1736 aaPredicted RBP10.15□□□□□ -0.78
HDAC6-216ENST00000468949 CDHR2Q9BYE9 1310 aa10.14□□□□□ -0.79
HDAC6-216ENST00000468949 IRS4O14654 1257 aaPredicted RBP10.14□□□□□ -0.79
HDAC6-216ENST00000468949 GRIN3BO60391 1043 aa10.14□□□□□ -0.79
HDAC6-216ENST00000468949 HMMRO75330 724 aa10.14□□□□□ -0.79
HDAC6-216ENST00000468949 NTSR2O95665 410 aa10.14□□□□□ -0.79
HDAC6-216ENST00000468949 NBPF7P0C2Y1 421 aaPredicted RBP10.14□□□□□ -0.79
HDAC6-216ENST00000468949 YBX3P16989 372 aaKnown RBP eCLIP10.14□□□□□ -0.79
HDAC6-216ENST00000468949 ERICH6BQ5W0A0 696 aa10.14□□□□□ -0.79
HDAC6-216ENST00000468949 NUTM1Q86Y26 1132 aa10.14□□□□□ -0.79
HDAC6-216ENST00000468949 USP44Q9H0E7 712 aa10.14□□□□□ -0.79
HDAC6-216ENST00000468949 C1orf115Q9H7X2 142 aa10.14□□□□□ -0.79
HDAC6-216ENST00000468949 ANKRD31Q8N7Z5 1873 aa10.14□□□□□ -0.79
HDAC6-216ENST00000468949 ZBTB7BO15156 539 aaPredicted RBP10.13□□□□□ -0.79
HDAC6-216ENST00000468949 PDE8AO60658 829 aa10.13□□□□□ -0.79
HDAC6-216ENST00000468949 TM4SF1P30408 202 aa10.13□□□□□ -0.79
HDAC6-216ENST00000468949 TGFB2P61812 414 aa10.13□□□□□ -0.79
HDAC6-216ENST00000468949 TAF7LQ5H9L4 462 aa10.13□□□□□ -0.79
HDAC6-216ENST00000468949 JARID2Q92833 1246 aaPredicted RBP10.13□□□□□ -0.79
HDAC6-216ENST00000468949 SUCLG2Q96I99 432 aa10.13□□□□□ -0.79
HDAC6-216ENST00000468949 UTYO14607 1347 aa10.12□□□□□ -0.79
HDAC6-216ENST00000468949 H7C1W4 665 aa10.12□□□□□ -0.79
HDAC6-216ENST00000468949 HCLS1P14317 486 aaPredicted RBP10.12□□□□□ -0.79
HDAC6-216ENST00000468949 CTSWP56202 376 aa10.12□□□□□ -0.79
HDAC6-216ENST00000468949 ERFEQ4G0M1 354 aa10.12□□□□□ -0.79
HDAC6-216ENST00000468949 CCDC152Q4G0S7 254 aa10.12□□□□□ -0.79
HDAC6-216ENST00000468949 PRR5LQ6MZQ0 368 aa10.12□□□□□ -0.79
HDAC6-216ENST00000468949 RPGRQ92834 1020 aaKnown RBP10.12□□□□□ -0.79
HDAC6-216ENST00000468949 NLRP3Q96P20 1036 aa10.12□□□□□ -0.79
HDAC6-216ENST00000468949 BICC1Q9H694 974 aaKnown RBP10.12□□□□□ -0.79
HDAC6-216ENST00000468949 ZBTB40Q9NUA8 1239 aa10.12□□□□□ -0.79
HDAC6-216ENST00000468949 ABCC12Q96J65 1359 aa10.12□□□□□ -0.79
HDAC6-216ENST00000468949 PDE6BP35913 854 aa10.11□□□□□ -0.79
HDAC6-216ENST00000468949 CCDC57Q2TAC2 916 aa10.11□□□□□ -0.79
HDAC6-216ENST00000468949 CCDC136Q96JN2 1154 aa10.11□□□□□ -0.79
HDAC6-216ENST00000468949 ZBTB47Q9UFB7 747 aaPredicted RBP10.11□□□□□ -0.79
HDAC6-216ENST00000468949 WWC3Q9ULE0 1092 aa10.11□□□□□ -0.79
HDAC6-216ENST00000468949 SRGAP3O43295 1099 aa10.1□□□□□ -0.79
HDAC6-216ENST00000468949 DPEP1P16444 411 aa10.1□□□□□ -0.79
HDAC6-216ENST00000468949 IFIT5Q13325 482 aaKnown RBP10.1□□□□□ -0.79
HDAC6-216ENST00000468949 OS9Q13438 667 aaPredicted RBP10.1□□□□□ -0.79
HDAC6-216ENST00000468949 LMBR1LQ6UX01 489 aa10.1□□□□□ -0.79
HDAC6-216ENST00000468949 RPAP2Q8IXW5 612 aaPredicted RBP10.1□□□□□ -0.79
HDAC6-216ENST00000468949 CCDC24Q8N4L8 307 aa10.1□□□□□ -0.79
HDAC6-216ENST00000468949 CCDC85AQ96PX6 553 aaPredicted RBP10.1□□□□□ -0.79
HDAC6-216ENST00000468949 PLA2G12BQ9BX93 195 aa10.1□□□□□ -0.79
HDAC6-216ENST00000468949 RWDD1Q9H446 243 aaPredicted RBP10.1□□□□□ -0.79
HDAC6-216ENST00000468949 RIC1Q4ADV7 1423 aa10.09□□□□□ -0.79
HDAC6-216ENST00000468949 LAMB2P55268 1798 aa10.09□□□□□ -0.79
HDAC6-216ENST00000468949 A0A0G2JLW4 131 aa10.09□□□□□ -0.79
HDAC6-216ENST00000468949 ANKRD18BA2A2Z9 1011 aa10.09□□□□□ -0.79
HDAC6-216ENST00000468949 CASP7P55210 303 aa10.09□□□□□ -0.79
HDAC6-216ENST00000468949 FAM161AQ3B820 660 aa10.09□□□□□ -0.79
HDAC6-216ENST00000468949 CEP85Q6P2H3 762 aa10.09□□□□□ -0.79
HDAC6-216ENST00000468949 DDX46Q7L014 1031 aaKnown RBP10.09□□□□□ -0.79
HDAC6-216ENST00000468949 SYNE4Q8N205 404 aa10.09□□□□□ -0.79
HDAC6-216ENST00000468949 CDC5LQ99459 802 aaKnown RBP10.09□□□□□ -0.79
HDAC6-216ENST00000468949 PPP4R2Q9NY27 417 aa10.09□□□□□ -0.79
HDAC6-216ENST00000468949 PDZRN3Q9UPQ7 1066 aa10.09□□□□□ -0.79
HDAC6-216ENST00000468949 BCS1LQ9Y276 419 aa10.09□□□□□ -0.79
HDAC6-216ENST00000468949 TNRC6CQ9HCJ0 1690 aaKnown RBP10.09□□□□□ -0.79
HDAC6-216ENST00000468949 IGHMBP2P38935 993 aaKnown RBP10.08□□□□□ -0.8
HDAC6-216ENST00000468949 ANKRD44Q8N8A2 993 aa10.08□□□□□ -0.8
HDAC6-216ENST00000468949 RBM17Q96I25 401 aaKnown RBP10.08□□□□□ -0.8
HDAC6-216ENST00000468949 BRIP1Q9BX63 1249 aa10.08□□□□□ -0.8
HDAC6-216ENST00000468949 TMX4Q9H1E5 349 aaPredicted RBP10.08□□□□□ -0.8
HDAC6-216ENST00000468949 PIM2Q9P1W9 311 aa10.08□□□□□ -0.8
HDAC6-216ENST00000468949 GTF3C3Q9Y5Q9 886 aa10.08□□□□□ -0.8
HDAC6-216ENST00000468949 CACNA1SQ13698 1873 aa10.08□□□□□ -0.8
HDAC6-216ENST00000468949 TIAM2Q8IVF5 1701 aa10.07□□□□□ -0.8
HDAC6-216ENST00000468949 H0YIN7 160 aa10.07□□□□□ -0.8
HDAC6-216ENST00000468949 ITGA6P23229 1130 aa10.07□□□□□ -0.8
HDAC6-216ENST00000468949 CHRNA5P30532 468 aa10.07□□□□□ -0.8
HDAC6-216ENST00000468949 FOXO4P98177 505 aa10.07□□□□□ -0.8
HDAC6-216ENST00000468949 ATP8B2P98198 1209 aa10.07□□□□□ -0.8
HDAC6-216ENST00000468949 RABL6Q3YEC7 729 aaPredicted RBP10.07□□□□□ -0.8
HDAC6-216ENST00000468949 HSP90AB4PQ58FF6 505 aa10.07□□□□□ -0.8
HDAC6-216ENST00000468949 DALRD3Q5D0E6 543 aaKnown RBP10.07□□□□□ -0.8
HDAC6-216ENST00000468949 EPHA10Q5JZY3 1008 aa10.07□□□□□ -0.8
HDAC6-216ENST00000468949 SLC10A5Q5PT55 438 aa10.07□□□□□ -0.8
HDAC6-216ENST00000468949 C2CD5Q86YS7 1000 aa10.07□□□□□ -0.8
HDAC6-216ENST00000468949 ANKRD18AQ8IVF6 992 aa10.07□□□□□ -0.8
HDAC6-216ENST00000468949 TTLL11Q8NHH1 800 aa10.07□□□□□ -0.8
HDAC6-216ENST00000468949 MPHOSPH8Q99549 860 aa10.07□□□□□ -0.8
HDAC6-216ENST00000468949 GREM2Q9H772 168 aa10.07□□□□□ -0.8
HDAC6-216ENST00000468949 PNMA6EA0A0J9YXQ4 647 aa10.06□□□□□ -0.8
HDAC6-216ENST00000468949 NPR1P16066 1061 aa10.06□□□□□ -0.8
HDAC6-216ENST00000468949 KCNA3P22001 575 aa10.06□□□□□ -0.8
HDAC6-216ENST00000468949 G3BP1Q13283 466 aaKnown RBP eCLIP10.06□□□□□ -0.88e-6■□□□□ 9
HDAC6-216ENST00000468949 MTX1Q13505 466 aa10.06□□□□□ -0.8
HDAC6-216ENST00000468949 SF3B3Q15393 1217 aaKnown RBP10.06□□□□□ -0.8
HDAC6-216ENST00000468949 PLCD3Q8N3E9 789 aa10.06□□□□□ -0.8
HDAC6-216ENST00000468949 ZNF784Q8NCA9 323 aaPredicted RBP10.06□□□□□ -0.8
HDAC6-216ENST00000468949 ZNF622Q969S3 477 aaKnown RBP eCLIP10.06□□□□□ -0.88e-10■□□□□ 9.8
HDAC6-216ENST00000468949 CNNM1Q9NRU3 951 aa10.06□□□□□ -0.8
HDAC6-216ENST00000468949 PCDHB15Q9Y5E8 787 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms