RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.2□□□□□ -0.94
COL6A3-208ENST00000468792 SPATA31A6Q5VVP1 1343 aa9.2□□□□□ -0.94
COL6A3-208ENST00000468792 DOT1LQ8TEK3 1739 aa9.19□□□□□ -0.94
COL6A3-208ENST00000468792 ANKRD36CQ5JPF3 1778 aa9.19□□□□□ -0.94
COL6A3-208ENST00000468792 ADAMTS2O95450 1211 aa9.19□□□□□ -0.94
COL6A3-208ENST00000468792 DEKP35659 375 aaKnown RBP9.19□□□□□ -0.94
COL6A3-208ENST00000468792 VASPP50552 380 aaPredicted RBP9.19□□□□□ -0.94
COL6A3-208ENST00000468792 GSE1Q14687 1217 aa9.19□□□□□ -0.94
COL6A3-208ENST00000468792 NECTIN1Q15223 517 aa9.19□□□□□ -0.94
COL6A3-208ENST00000468792 CCDC57Q2TAC2 916 aa9.19□□□□□ -0.94
COL6A3-208ENST00000468792 CWC27Q6UX04 472 aaKnown RBP9.19□□□□□ -0.94
COL6A3-208ENST00000468792 ZNF34Q8IZ26 560 aa9.19□□□□□ -0.94
COL6A3-208ENST00000468792 MARCH10Q8NA82 808 aaPredicted RBP9.19□□□□□ -0.94
COL6A3-208ENST00000468792 KLHDC4Q8TBB5 520 aa9.19□□□□□ -0.94
COL6A3-208ENST00000468792 BCL11AQ9H165 835 aa9.19□□□□□ -0.94
COL6A3-208ENST00000468792 SIL1Q9H173 461 aa9.19□□□□□ -0.94
COL6A3-208ENST00000468792 IL25Q9H293 177 aa9.19□□□□□ -0.94
COL6A3-208ENST00000468792 PALD1Q9ULE6 856 aa9.19□□□□□ -0.94
COL6A3-208ENST00000468792 AKAP2Q9Y2D5 859 aa9.19□□□□□ -0.94
COL6A3-208ENST00000468792 MED23Q9ULK4 1368 aa9.19□□□□□ -0.94
COL6A3-208ENST00000468792 PDIA4P13667 645 aaKnown RBP9.18□□□□□ -0.94
COL6A3-208ENST00000468792 SKOR2Q2VWA4 1001 aaPredicted RBP9.18□□□□□ -0.94
COL6A3-208ENST00000468792 PARP10Q53GL7 1025 aa9.18□□□□□ -0.94
COL6A3-208ENST00000468792 USPL1Q5W0Q7 1092 aa9.18□□□□□ -0.94
COL6A3-208ENST00000468792 INTS5Q6P9B9 1019 aaKnown RBP9.18□□□□□ -0.94
COL6A3-208ENST00000468792 CCDC171Q6TFL3 1326 aa9.18□□□□□ -0.94
COL6A3-208ENST00000468792 BCL9LQ86UU0 1499 aa9.18□□□□□ -0.94
COL6A3-208ENST00000468792 PALLDQ8WX93 1383 aa9.18□□□□□ -0.94
COL6A3-208ENST00000468792 TNPO1Q92973 898 aaKnown RBP9.18□□□□□ -0.94
COL6A3-208ENST00000468792 ZNF512BQ96KM6 892 aaPredicted RBP9.18□□□□□ -0.94
COL6A3-208ENST00000468792 TTC14Q96N46 770 aa9.18□□□□□ -0.94
COL6A3-208ENST00000468792 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.18□□□□□ -0.94
COL6A3-208ENST00000468792 CCDC87Q9NVE4 849 aa9.18□□□□□ -0.94
COL6A3-208ENST00000468792 TLR7Q9NYK1 1049 aaKnown RBP9.18□□□□□ -0.94
COL6A3-208ENST00000468792 HMG20BQ9P0W2 317 aa9.18□□□□□ -0.94
COL6A3-208ENST00000468792 ZBTB1Q9Y2K1 713 aa9.18□□□□□ -0.94
COL6A3-208ENST00000468792 SNX14Q9Y5W7 946 aa9.18□□□□□ -0.94
COL6A3-208ENST00000468792 ZNF609O15014 1411 aa9.17□□□□□ -0.94
COL6A3-208ENST00000468792 RTL9Q8NET4 1388 aa9.17□□□□□ -0.94
COL6A3-208ENST00000468792 SH3TC1Q8TE82 1336 aa9.17□□□□□ -0.94
COL6A3-208ENST00000468792 LOC102724428A0A0B4J2F2 783 aa9.17□□□□□ -0.94
COL6A3-208ENST00000468792 MAP4K4O95819 1239 aaPredicted RBP9.17□□□□□ -0.94
COL6A3-208ENST00000468792 ZKSCAN1P17029 563 aaPredicted RBP9.17□□□□□ -0.94
COL6A3-208ENST00000468792 SIK1P57059 783 aa9.17□□□□□ -0.94
COL6A3-208ENST00000468792 IFIT5Q13325 482 aaKnown RBP9.17□□□□□ -0.94
COL6A3-208ENST00000468792 LRRFIP1Q32MZ4 808 aaKnown RBP9.17□□□□□ -0.94
COL6A3-208ENST00000468792 VPS53Q5VIR6 699 aa9.17□□□□□ -0.94
COL6A3-208ENST00000468792 RNF20Q5VTR2 975 aa9.17□□□□□ -0.94
COL6A3-208ENST00000468792 CLEC4GQ6UXB4 293 aa9.17□□□□□ -0.94
COL6A3-208ENST00000468792 KBTBD3Q8NAB2 608 aa9.17□□□□□ -0.94
COL6A3-208ENST00000468792 TMX3Q96JJ7 454 aa9.17□□□□□ -0.94
COL6A3-208ENST00000468792 BOLA2Q9H3K6 86 aa9.17□□□□□ -0.94
COL6A3-208ENST00000468792 ZSWIM6Q9HCJ5 1215 aa9.17□□□□□ -0.94
COL6A3-208ENST00000468792 CEP126Q9P2H0 1117 aa9.17□□□□□ -0.94
COL6A3-208ENST00000468792 NUP98P52948 1817 aa9.17□□□□□ -0.94
COL6A3-208ENST00000468792 PDE8AO60658 829 aa9.16□□□□□ -0.94
COL6A3-208ENST00000468792 PSMA5P28066 241 aa9.16□□□□□ -0.94
COL6A3-208ENST00000468792 NMIQ13287 307 aaPredicted RBP9.16□□□□□ -0.94
COL6A3-208ENST00000468792 KRT32Q14532 448 aa9.16□□□□□ -0.94
COL6A3-208ENST00000468792 HLFQ16534 295 aa9.16□□□□□ -0.94
COL6A3-208ENST00000468792 DZIP3Q86Y13 1208 aaKnown RBP9.16□□□□□ -0.94
COL6A3-208ENST00000468792 SPRYD3Q8NCJ5 442 aa9.16□□□□□ -0.94
COL6A3-208ENST00000468792 TTLL11Q8NHH1 800 aa9.16□□□□□ -0.94
COL6A3-208ENST00000468792 JARID2Q92833 1246 aaPredicted RBP9.16□□□□□ -0.94
COL6A3-208ENST00000468792 ZSCAN31Q96LW9 406 aaPredicted RBP9.16□□□□□ -0.94
COL6A3-208ENST00000468792 DBNDD2Q9BQY9 259 aa9.16□□□□□ -0.94
COL6A3-208ENST00000468792 FSD1Q9BTV5 496 aa9.16□□□□□ -0.94
COL6A3-208ENST00000468792 HELLSQ9NRZ9 838 aa9.16□□□□□ -0.94
COL6A3-208ENST00000468792 ISY1Q9ULR0 285 aaKnown RBP9.16□□□□□ -0.94
COL6A3-208ENST00000468792 RIPOR2Q9Y4F9 1068 aa9.16□□□□□ -0.94
COL6A3-208ENST00000468792 RPAP1Q9BWH6 1393 aaPredicted RBP9.15□□□□□ -0.94
COL6A3-208ENST00000468792 A0A1B0GUL7 405 aa9.15□□□□□ -0.94
COL6A3-208ENST00000468792 UBAP1LF5GYI3 381 aa9.15□□□□□ -0.94
COL6A3-208ENST00000468792 GOLGA6L22H0YM25 854 aa9.15□□□□□ -0.94
COL6A3-208ENST00000468792 TAF5LO75529 589 aa9.15□□□□□ -0.94
COL6A3-208ENST00000468792 ZFYP08048 801 aaPredicted RBP9.15□□□□□ -0.94
COL6A3-208ENST00000468792 ATP6V1AP38606 617 aa9.15□□□□□ -0.94
COL6A3-208ENST00000468792 CTSWP56202 376 aa9.15□□□□□ -0.94
COL6A3-208ENST00000468792 PTH1RQ03431 593 aa9.15□□□□□ -0.94
COL6A3-208ENST00000468792 MCMDC2Q4G0Z9 681 aa9.15□□□□□ -0.94
COL6A3-208ENST00000468792 RC3H1Q5TC82 1133 aaKnown RBP9.15□□□□□ -0.94
COL6A3-208ENST00000468792 RASEFQ8IZ41 740 aa9.15□□□□□ -0.94
COL6A3-208ENST00000468792 SYTL4Q96C24 671 aaPredicted RBP9.15□□□□□ -0.94
COL6A3-208ENST00000468792 FAM89AQ96GI7 184 aa9.15□□□□□ -0.94
COL6A3-208ENST00000468792 SH2B1Q9NRF2 756 aaPredicted RBP9.15□□□□□ -0.94
COL6A3-208ENST00000468792 LIMCH1Q9UPQ0 1083 aa9.15□□□□□ -0.94
COL6A3-208ENST00000468792 CHMP3Q9Y3E7 222 aa9.15□□□□□ -0.94
COL6A3-208ENST00000468792 MYH3P11055 1940 aa9.15□□□□□ -0.95
COL6A3-208ENST00000468792 COL5A3P25940 1745 aaPredicted RBP9.14□□□□□ -0.95
COL6A3-208ENST00000468792 CNTNAP4Q9C0A0 1308 aa9.14□□□□□ -0.95
COL6A3-208ENST00000468792 LRP5O75197 1615 aa9.14□□□□□ -0.95
COL6A3-208ENST00000468792 A0A0D9SFI3 127 aa9.14□□□□□ -0.95
COL6A3-208ENST00000468792 ANKRD18BA2A2Z9 1011 aa9.14□□□□□ -0.95
COL6A3-208ENST00000468792 IRS4O14654 1257 aaPredicted RBP9.14□□□□□ -0.95
COL6A3-208ENST00000468792 ONECUT3O60422 494 aaPredicted RBP9.14□□□□□ -0.95
COL6A3-208ENST00000468792 CAMTA2O94983 1202 aa9.14□□□□□ -0.95
COL6A3-208ENST00000468792 SSFA2P28290 1259 aa9.14□□□□□ -0.95
COL6A3-208ENST00000468792 CRKLP46109 303 aaKnown RBP9.14□□□□□ -0.95
COL6A3-208ENST00000468792 ANKRD1Q15327 319 aa9.14□□□□□ -0.95
COL6A3-208ENST00000468792 LRRC24Q50LG9 513 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms