RNA–Protein interactions for RNA: ENST00000467663.5

CTNS-205, Transcript of cystinosin, lysosomal cystine transporter, human

TSL 3

Gene CTNS, Length 590 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNS-205	ENST00000467663	FAM89A	Q96GI7	184 aa		15.33	■□□□□ 0.04
CTNS-205	ENST00000467663	TMX4	Q9H1E5	349 aa	Predicted RBP	15.33	■□□□□ 0.04
CTNS-205	ENST00000467663	DDX58	O95786	925 aa	Known RBP	15.32	■□□□□ 0.04
CTNS-205	ENST00000467663	RARS	P54136	660 aa	Known RBP	15.32	■□□□□ 0.04
CTNS-205	ENST00000467663	GRAP	Q13588	217 aa		15.32	■□□□□ 0.04
CTNS-205	ENST00000467663	SF3B3	Q15393	1217 aa	Known RBP	15.32	■□□□□ 0.04
CTNS-205	ENST00000467663	TWISTNB	Q3B726	338 aa	Predicted RBP	15.32	■□□□□ 0.04
CTNS-205	ENST00000467663	GRAPL	Q8TC17	118 aa	Predicted RBP	15.32	■□□□□ 0.04
CTNS-205	ENST00000467663	JDP2	Q8WYK2	163 aa		15.32	■□□□□ 0.04
CTNS-205	ENST00000467663	VPS33B	Q9H267	617 aa		15.32	■□□□□ 0.04
CTNS-205	ENST00000467663	ZNF541	Q9H0D2	1346 aa		15.32	■□□□□ 0.04
CTNS-205	ENST00000467663	IQCA1L	A6NCM1	817 aa		15.31	■□□□□ 0.04
CTNS-205	ENST00000467663	VAMP4	O75379	141 aa		15.31	■□□□□ 0.04
CTNS-205	ENST00000467663	DNAJC5G	Q8N7S2	189 aa		15.31	■□□□□ 0.04
CTNS-205	ENST00000467663	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	15.31	■□□□□ 0.04
CTNS-205	ENST00000467663	CCDC191	Q8NCU4	936 aa		15.31	■□□□□ 0.04
CTNS-205	ENST00000467663	MYD88	Q99836	296 aa		15.31	■□□□□ 0.04
CTNS-205	ENST00000467663	METTL22	Q9BUU2	404 aa	Predicted RBP	15.31	■□□□□ 0.04
CTNS-205	ENST00000467663	RTFDC1	Q9BY42	306 aa	Predicted RBP	15.31	■□□□□ 0.04
CTNS-205	ENST00000467663	LAMB2	P55268	1798 aa		15.31	■□□□□ 0.04
CTNS-205	ENST00000467663	IRS4	O14654	1257 aa	Predicted RBP	15.3	■□□□□ 0.04
CTNS-205	ENST00000467663	COL4A5	P29400	1685 aa		15.3	■□□□□ 0.04
CTNS-205	ENST00000467663	TMC4	Q7Z404	712 aa		15.3	■□□□□ 0.04
CTNS-205	ENST00000467663	GPC2	Q8N158	579 aa		15.3	■□□□□ 0.04
CTNS-205	ENST00000467663	LARGE2	Q8N3Y3	721 aa		15.3	■□□□□ 0.04
CTNS-205	ENST00000467663	KIF16B	Q96L93	1317 aa		15.3	■□□□□ 0.04
CTNS-205	ENST00000467663	STK31	Q9BXU1	1019 aa		15.3	■□□□□ 0.04
CTNS-205	ENST00000467663	GTF3C3	Q9Y5Q9	886 aa		15.3	■□□□□ 0.04
CTNS-205	ENST00000467663	CEP350	Q5VT06	3117 aa		15.3	■□□□□ 0.04
CTNS-205	ENST00000467663	IPO8	O15397	1037 aa	Known RBP	15.29	■□□□□ 0.04
CTNS-205	ENST00000467663	PDE3A	Q14432	1141 aa		15.29	■□□□□ 0.04
CTNS-205	ENST00000467663	RTL5	Q5HYW3	569 aa	Predicted RBP	15.29	■□□□□ 0.04
CTNS-205	ENST00000467663	KSR2	Q6VAB6	950 aa		15.29	■□□□□ 0.04
CTNS-205	ENST00000467663	SUPT20H	Q8NEM7	779 aa		15.29	■□□□□ 0.04
CTNS-205	ENST00000467663	TAF1D	Q9H5J8	278 aa	Predicted RBP	15.29	■□□□□ 0.04
CTNS-205	ENST00000467663	MAP3K2	Q9Y2U5	619 aa		15.29	■□□□□ 0.04
CTNS-205	ENST00000467663	DDX60	Q8IY21	1712 aa	Known RBP	15.29	■□□□□ 0.04
CTNS-205	ENST00000467663	PCCA	P05165	728 aa	Predicted RBP	15.28	■□□□□ 0.04
CTNS-205	ENST00000467663	HSP90B1	P14625	803 aa	Known RBP	15.28	■□□□□ 0.04
CTNS-205	ENST00000467663	EIF6	P56537	245 aa	Known RBP	15.28	■□□□□ 0.04
CTNS-205	ENST00000467663	CHADL	Q6NUI6	762 aa		15.28	■□□□□ 0.04
CTNS-205	ENST00000467663	DPP8	Q6V1X1	898 aa	Predicted RBP	15.28	■□□□□ 0.04
CTNS-205	ENST00000467663	MPND	Q8N594	471 aa		15.28	■□□□□ 0.04
CTNS-205	ENST00000467663	CWC25	Q9NXE8	425 aa	Predicted RBP	15.28	■□□□□ 0.04
CTNS-205	ENST00000467663	HACL1	Q9UJ83	578 aa		15.28	■□□□□ 0.04
CTNS-205	ENST00000467663	PI4KAP2	A4QPH2	592 aa		15.27	■□□□□ 0.04
CTNS-205	ENST00000467663	PPIP5K2	O43314	1243 aa		15.27	■□□□□ 0.04
CTNS-205	ENST00000467663	SLC4A2	P04920	1241 aa		15.27	■□□□□ 0.04
CTNS-205	ENST00000467663	POTEI	P0CG38	1075 aa		15.27	■□□□□ 0.04
CTNS-205	ENST00000467663	POTEJ	P0CG39	1038 aa		15.27	■□□□□ 0.04
CTNS-205	ENST00000467663	AOC3	Q16853	763 aa		15.27	■□□□□ 0.04
CTNS-205	ENST00000467663	NIM1K	Q8IY84	436 aa		15.27	■□□□□ 0.04
CTNS-205	ENST00000467663	PI4KAP1	Q8N8J0	262 aa		15.27	■□□□□ 0.04
CTNS-205	ENST00000467663	ARHGAP45	Q92619	1136 aa		15.27	■□□□□ 0.04
CTNS-205	ENST00000467663	CELF1	Q92879	486 aa	Known RBP	15.27	■□□□□ 0.04
CTNS-205	ENST00000467663	SCN4A	P35499	1836 aa		15.27	■□□□□ 0.03
CTNS-205	ENST00000467663	IGKV5-2	P06315	115 aa		15.26	■□□□□ 0.03
CTNS-205	ENST00000467663	HTRA3	P83110	453 aa		15.26	■□□□□ 0.03
CTNS-205	ENST00000467663	AAMP	Q13685	434 aa		15.26	■□□□□ 0.03
CTNS-205	ENST00000467663	G2E3	Q7L622	706 aa		15.26	■□□□□ 0.03
CTNS-205	ENST00000467663	SMC4	Q9NTJ3	1288 aa		15.26	■□□□□ 0.03
CTNS-205	ENST00000467663	PDE8A	O60658	829 aa		15.25	■□□□□ 0.03
CTNS-205	ENST00000467663	EPHX2	P34913	555 aa		15.25	■□□□□ 0.03
CTNS-205	ENST00000467663	KIAA2012	Q0VF49	1180 aa		15.25	■□□□□ 0.03
CTNS-205	ENST00000467663	ZKSCAN2	Q63HK3	967 aa		15.25	■□□□□ 0.03
CTNS-205	ENST00000467663	LDHD	Q86WU2	507 aa		15.25	■□□□□ 0.03
CTNS-205	ENST00000467663	CDHR2	Q9BYE9	1310 aa		15.24	■□□□□ 0.03
CTNS-205	ENST00000467663	BCAR3	O75815	825 aa		15.24	■□□□□ 0.03
CTNS-205	ENST00000467663	RPS8	P62241	208 aa	Known RBP	15.24	■□□□□ 0.03
CTNS-205	ENST00000467663	NEXN	Q0ZGT2	675 aa		15.24	■□□□□ 0.03
CTNS-205	ENST00000467663	FLII	Q13045	1269 aa		15.24	■□□□□ 0.03
CTNS-205	ENST00000467663	PNMA8A	Q86V59	439 aa	Predicted RBP	15.24	■□□□□ 0.03
CTNS-205	ENST00000467663	SSH1	Q8WYL5	1049 aa		15.24	■□□□□ 0.03
CTNS-205	ENST00000467663	KLRG1	Q96E93	195 aa		15.24	■□□□□ 0.03
CTNS-205	ENST00000467663	ZNRF3	Q9ULT6	936 aa		15.24	■□□□□ 0.03
CTNS-205	ENST00000467663	GJA3	Q9Y6H8	435 aa		15.24	■□□□□ 0.03
CTNS-205	ENST00000467663	LRRC37A	A6NMS7	1700 aa		15.23	■□□□□ 0.03
CTNS-205	ENST00000467663	SCNN1D	P51172	638 aa		15.23	■□□□□ 0.03
CTNS-205	ENST00000467663	CCDC152	Q4G0S7	254 aa		15.23	■□□□□ 0.03
CTNS-205	ENST00000467663	JARID2	Q92833	1246 aa	Predicted RBP	15.23	■□□□□ 0.03
CTNS-205	ENST00000467663	SEC31B	Q9NQW1	1179 aa		15.23	■□□□□ 0.03
CTNS-205	ENST00000467663	DUOX1	Q9NRD9	1551 aa		15.23	■□□□□ 0.03
CTNS-205	ENST00000467663	TAF1	P21675	1872 aa		15.23	■□□□□ 0.03
CTNS-205	ENST00000467663	COL4A1	P02462	1669 aa		15.22	■□□□□ 0.03
CTNS-205	ENST00000467663	NEURL1B	A8MQ27	555 aa		15.22	■□□□□ 0.03
CTNS-205	ENST00000467663	CXCL9	Q07325	125 aa		15.22	■□□□□ 0.03
CTNS-205	ENST00000467663	CWF19L2	Q2TBE0	894 aa	Known RBP	15.22	■□□□□ 0.03
CTNS-205	ENST00000467663	EAPP	Q56P03	285 aa	Predicted RBP	15.22	■□□□□ 0.03
CTNS-205	ENST00000467663	CHMP4B	Q9H444	224 aa	Known RBP	15.22	■□□□□ 0.03
CTNS-205	ENST00000467663	NSFL1C	Q9UNZ2	370 aa	Known RBP	15.22	■□□□□ 0.03
CTNS-205	ENST00000467663	PTPRC	P08575	1304 aa		15.21	■□□□□ 0.03
CTNS-205	ENST00000467663	PASK	Q96RG2	1323 aa		15.21	■□□□□ 0.03
CTNS-205	ENST00000467663		H7C1W4	665 aa		15.21	■□□□□ 0.03
CTNS-205	ENST00000467663	LMOD1	P29536	600 aa	Predicted RBP	15.21	■□□□□ 0.03
CTNS-205	ENST00000467663	GPSM2	P81274	684 aa		15.21	■□□□□ 0.03
CTNS-205	ENST00000467663	MRPL50	Q8N5N7	158 aa	Known RBP	15.21	■□□□□ 0.03
CTNS-205	ENST00000467663	API5	Q9BZZ5	524 aa	Known RBP	15.21	■□□□□ 0.03
CTNS-205	ENST00000467663	ADAMTSL1	Q8N6G6	1762 aa		15.21	■□□□□ 0.02
CTNS-205	ENST00000467663	ITGBL1	O95965	494 aa	Predicted RBP	15.2	■□□□□ 0.02
CTNS-205	ENST00000467663	EPS15	P42566	896 aa		15.2	■□□□□ 0.02

Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms