RNA–Protein interactions for RNA: ENST00000465627.5

UBA3-208, Transcript of ubiquitin like modifier activating enzyme 3, human

TSL 2

Gene UBA3, Length 1,388 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBA3-208	ENST00000465627	IGHD	P01880	384 aa		11.14	□□□□□ -0.63
UBA3-208	ENST00000465627	A1BG	P04217	495 aa		11.14	□□□□□ -0.63
UBA3-208	ENST00000465627	PDAP1	Q13442	181 aa	Known RBP	11.14	□□□□□ -0.63
UBA3-208	ENST00000465627	KSR2	Q6VAB6	950 aa		11.14	□□□□□ -0.63
UBA3-208	ENST00000465627	LOC102724428	A0A0B4J2F2	783 aa		11.13	□□□□□ -0.63
UBA3-208	ENST00000465627	PIP4K2A	P48426	406 aa	Predicted RBP	11.13	□□□□□ -0.63
UBA3-208	ENST00000465627	SIK1	P57059	783 aa		11.13	□□□□□ -0.63
UBA3-208	ENST00000465627	ITPK1	Q13572	414 aa		11.13	□□□□□ -0.63
UBA3-208	ENST00000465627	COPS6	Q7L5N1	327 aa		11.13	□□□□□ -0.63
UBA3-208	ENST00000465627	SIRT2	Q8IXJ6	389 aa		11.13	□□□□□ -0.63
UBA3-208	ENST00000465627	XAGE3	Q8WTP9	111 aa		11.13	□□□□□ -0.63
UBA3-208	ENST00000465627	DNAAF4	Q8WXU2	420 aa		11.13	□□□□□ -0.63
UBA3-208	ENST00000465627	SMARCC1	Q92922	1105 aa	Predicted RBP	11.13	□□□□□ -0.63
UBA3-208	ENST00000465627	SYTL4	Q96C24	671 aa	Predicted RBP	11.13	□□□□□ -0.63
UBA3-208	ENST00000465627	MEIS3	Q99687	375 aa		11.13	□□□□□ -0.63
UBA3-208	ENST00000465627	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.13	□□□□□ -0.63
UBA3-208	ENST00000465627	HDAC1	Q13547	482 aa	Predicted RBP	11.12	□□□□□ -0.63
UBA3-208	ENST00000465627	INTS5	Q6P9B9	1019 aa	Known RBP	11.12	□□□□□ -0.63
UBA3-208	ENST00000465627	COL23A1	Q86Y22	540 aa	Predicted RBP	11.12	□□□□□ -0.63
UBA3-208	ENST00000465627	USP44	Q9H0E7	712 aa		11.12	□□□□□ -0.63
UBA3-208	ENST00000465627	MAP3K2	Q9Y2U5	619 aa		11.12	□□□□□ -0.63
UBA3-208	ENST00000465627	UTY	O14607	1347 aa		11.11	□□□□□ -0.63
UBA3-208	ENST00000465627	IGKV5-2	P06315	115 aa		11.11	□□□□□ -0.63
UBA3-208	ENST00000465627	MYL6B	P14649	208 aa		11.11	□□□□□ -0.63
UBA3-208	ENST00000465627	TTLL7	Q6ZT98	887 aa		11.11	□□□□□ -0.63
UBA3-208	ENST00000465627	CENPQ	Q7L2Z9	268 aa	Predicted RBP	11.11	□□□□□ -0.63
UBA3-208	ENST00000465627	IFNLR1	Q8IU57	520 aa	Predicted RBP	11.11	□□□□□ -0.63
UBA3-208	ENST00000465627	CHMP4B	Q9H444	224 aa	Known RBP	11.11	□□□□□ -0.63
UBA3-208	ENST00000465627	WBP1L	Q9NX94	342 aa		11.11	□□□□□ -0.63
UBA3-208	ENST00000465627	ALDH1L1	O75891	902 aa		11.1	□□□□□ -0.63
UBA3-208	ENST00000465627	STARD3NL	O95772	234 aa		11.1	□□□□□ -0.63
UBA3-208	ENST00000465627	C9orf131	Q5VYM1	1079 aa		11.1	□□□□□ -0.63
UBA3-208	ENST00000465627	SLC4A10	Q6U841	1118 aa		11.1	□□□□□ -0.63
UBA3-208	ENST00000465627	ANKRD13D	Q6ZTN6	518 aa		11.1	□□□□□ -0.63
UBA3-208	ENST00000465627	LINS1	Q8NG48	757 aa		11.1	□□□□□ -0.63
UBA3-208	ENST00000465627	PLBD2	Q8NHP8	589 aa		11.1	□□□□□ -0.63
UBA3-208	ENST00000465627	METTL22	Q9BUU2	404 aa	Predicted RBP	11.1	□□□□□ -0.63
UBA3-208	ENST00000465627	ZBTB1	Q9Y2K1	713 aa		11.1	□□□□□ -0.63
UBA3-208	ENST00000465627	ANKRD36C	Q5JPF3	1778 aa		11.1	□□□□□ -0.63
UBA3-208	ENST00000465627	AFDN	P55196	1824 aa	Known RBP	11.09	□□□□□ -0.63
UBA3-208	ENST00000465627	DDX58	O95786	925 aa	Known RBP	11.09	□□□□□ -0.63
UBA3-208	ENST00000465627	EIF5	P55010	431 aa	Known RBP	11.09	□□□□□ -0.63
UBA3-208	ENST00000465627	ARHGAP27	Q6ZUM4	889 aa		11.09	□□□□□ -0.63
UBA3-208	ENST00000465627	SRCIN1	Q9C0H9	1055 aa		11.09	□□□□□ -0.63
UBA3-208	ENST00000465627	BCOR	Q6W2J9	1755 aa		11.09	□□□□□ -0.63
UBA3-208	ENST00000465627	KIAA1551	Q9HCM1	1747 aa		11.09	□□□□□ -0.63
UBA3-208	ENST00000465627	NUP98	P52948	1817 aa		11.08	□□□□□ -0.64
UBA3-208	ENST00000465627	COL15A1	P39059	1388 aa		11.08	□□□□□ -0.64
UBA3-208	ENST00000465627	IL6ST	P40189	918 aa	Predicted RBP	11.08	□□□□□ -0.64
UBA3-208	ENST00000465627	AIMP1	Q12904	312 aa	Known RBP	11.08	□□□□□ -0.64
UBA3-208	ENST00000465627	SMC5	Q8IY18	1101 aa		11.08	□□□□□ -0.64
UBA3-208	ENST00000465627	ANKRD44	Q8N8A2	993 aa		11.08	□□□□□ -0.64
UBA3-208	ENST00000465627	LINC00116	Q8NCU8	138 aa		11.08	□□□□□ -0.64
UBA3-208	ENST00000465627	C1orf115	Q9H7X2	142 aa		11.08	□□□□□ -0.64
UBA3-208	ENST00000465627	CNTNAP4	Q9C0A0	1308 aa		11.07	□□□□□ -0.64
UBA3-208	ENST00000465627	NEURL1B	A8MQ27	555 aa		11.07	□□□□□ -0.64
UBA3-208	ENST00000465627	ATP6V1A	P38606	617 aa		11.07	□□□□□ -0.64
UBA3-208	ENST00000465627	CRKL	P46109	303 aa	Known RBP	11.07	□□□□□ -0.64
UBA3-208	ENST00000465627	CASP7	P55210	303 aa		11.07	□□□□□ -0.64
UBA3-208	ENST00000465627	CWF19L2	Q2TBE0	894 aa	Known RBP	11.07	□□□□□ -0.64
UBA3-208	ENST00000465627	CEP85	Q6P2H3	762 aa		11.07	□□□□□ -0.64
UBA3-208	ENST00000465627	CCDC87	Q9NVE4	849 aa		11.07	□□□□□ -0.64
UBA3-208	ENST00000465627	C4B	P0C0L5	1744 aa		11.07	□□□□□ -0.64
UBA3-208	ENST00000465627	SBF1	O95248	1867 aa		11.07	□□□□□ -0.64
UBA3-208	ENST00000465627	CNTNAP1	P78357	1384 aa		11.07	□□□□□ -0.64
UBA3-208	ENST00000465627	GNAI3	P08754	354 aa		11.06	□□□□□ -0.64
UBA3-208	ENST00000465627	NBPF7	P0C2Y1	421 aa	Predicted RBP	11.06	□□□□□ -0.64
UBA3-208	ENST00000465627	VEGFB	P49765	207 aa		11.06	□□□□□ -0.64
UBA3-208	ENST00000465627	TRIM28	Q13263	835 aa	Known RBP	11.06	□□□□□ -0.64
UBA3-208	ENST00000465627	RC3H1	Q5TC82	1133 aa	Known RBP	11.06	□□□□□ -0.64
UBA3-208	ENST00000465627	RIC3	Q7Z5B4	369 aa		11.06	□□□□□ -0.64
UBA3-208	ENST00000465627	RPAP2	Q8IXW5	612 aa	Predicted RBP	11.06	□□□□□ -0.64
UBA3-208	ENST00000465627	KAZALD1	Q96I82	304 aa		11.06	□□□□□ -0.64
UBA3-208	ENST00000465627	ISCA1	Q9BUE6	129 aa		11.06	□□□□□ -0.64
UBA3-208	ENST00000465627	SCN7A	Q01118	1682 aa		11.06	□□□□□ -0.64
UBA3-208	ENST00000465627	MAP3K15	Q6ZN16	1313 aa		11.06	□□□□□ -0.64
UBA3-208	ENST00000465627	GNAI2	P04899	355 aa		11.05	□□□□□ -0.64
UBA3-208	ENST00000465627	MTX1	Q13505	466 aa		11.05	□□□□□ -0.64
UBA3-208	ENST00000465627	GCKR	Q14397	625 aa		11.05	□□□□□ -0.64
UBA3-208	ENST00000465627	RWDD1	Q9H446	243 aa	Predicted RBP	11.05	□□□□□ -0.64
UBA3-208	ENST00000465627	UBR3	Q6ZT12	1888 aa		11.05	□□□□□ -0.64
UBA3-208	ENST00000465627	CASP8AP2	Q9UKL3	1982 aa		11.04	□□□□□ -0.64
UBA3-208	ENST00000465627	ERVV-1	B6SEH8	477 aa		11.04	□□□□□ -0.64
UBA3-208	ENST00000465627	GRM8	O00222	908 aa		11.04	□□□□□ -0.64
UBA3-208	ENST00000465627	TCIRG1	Q13488	830 aa		11.04	□□□□□ -0.64
UBA3-208	ENST00000465627	SMIM5	Q71RC9	77 aa		11.04	□□□□□ -0.64
UBA3-208	ENST00000465627	MYD88	Q99836	296 aa		11.04	□□□□□ -0.64
UBA3-208	ENST00000465627	C4A	P0C0L4	1744 aa		11.04	□□□□□ -0.64
UBA3-208	ENST00000465627	RGL2	O15211	777 aa		11.03	□□□□□ -0.64
UBA3-208	ENST00000465627	ATP8B2	P98198	1209 aa		11.03	□□□□□ -0.64
UBA3-208	ENST00000465627	HLF	Q16534	295 aa		11.03	□□□□□ -0.64
UBA3-208	ENST00000465627	GIGYF2	Q6Y7W6	1299 aa	Known RBP	11.03	□□□□□ -0.64
UBA3-208	ENST00000465627	ZBTB3	Q9H5J0	574 aa		11.03	□□□□□ -0.64
UBA3-208	ENST00000465627	DCTPP1	Q9H773	170 aa		11.03	□□□□□ -0.64
UBA3-208	ENST00000465627	BCS1L	Q9Y276	419 aa		11.03	□□□□□ -0.64
UBA3-208	ENST00000465627	LRRFIP2	Q9Y608	721 aa	Known RBP	11.03	□□□□□ -0.64
UBA3-208	ENST00000465627	PNMA6E	A0A0J9YXQ4	647 aa		11.03	□□□□□ -0.64
UBA3-208	ENST00000465627		G3V3G9	751 aa		11.03	□□□□□ -0.64
UBA3-208	ENST00000465627		H7C1W4	665 aa		11.03	□□□□□ -0.64
UBA3-208	ENST00000465627	CAMTA2	O94983	1202 aa		11.03	□□□□□ -0.64

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