RNA–Protein interactions for RNA: ENST00000465471.5

SKA3-205, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 5

Gene SKA3, Length 930 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-205ENST00000465471 DDX46Q7L014 1031 aaKnown RBP25.74■■□□□ 1.71
SKA3-205ENST00000465471 RTL9Q8NET4 1388 aa25.73■■□□□ 1.71
SKA3-205ENST00000465471 CTSWP56202 376 aa25.73■■□□□ 1.71
SKA3-205ENST00000465471 NFKBIEO00221 500 aa25.72■■□□□ 1.71
SKA3-205ENST00000465471 GRAPQ13588 217 aa25.72■■□□□ 1.71
SKA3-205ENST00000465471 GRAPLQ8TC17 118 aaPredicted RBP25.72■■□□□ 1.71
SKA3-205ENST00000465471 LTBP3Q9NS15 1303 aa25.71■■□□□ 1.71
SKA3-205ENST00000465471 PPEF1O14829 653 aaPredicted RBP25.71■■□□□ 1.71
SKA3-205ENST00000465471 IPO8O15397 1037 aaKnown RBP25.71■■□□□ 1.71
SKA3-205ENST00000465471 TRIM27P14373 513 aa25.71■■□□□ 1.71
SKA3-205ENST00000465471 CCDC152Q4G0S7 254 aa25.71■■□□□ 1.71
SKA3-205ENST00000465471 ATF7IPQ6VMQ6 1270 aa25.71■■□□□ 1.71
SKA3-205ENST00000465471 TTLL11Q8NHH1 800 aa25.71■■□□□ 1.71
SKA3-205ENST00000465471 ZNF219Q9P2Y4 722 aaPredicted RBP25.71■■□□□ 1.71
SKA3-205ENST00000465471 BBOX1O75936 387 aa25.7■■□□□ 1.7
SKA3-205ENST00000465471 CCT4P50991 539 aaKnown RBP25.7■■□□□ 1.7
SKA3-205ENST00000465471 CCDC93Q567U6 631 aa25.7■■□□□ 1.7
SKA3-205ENST00000465471 OLFM4Q6UX06 510 aa25.7■■□□□ 1.7
SKA3-205ENST00000465471 CSF1RP07333 972 aa25.69■■□□□ 1.7
SKA3-205ENST00000465471 RASSF7Q02833 373 aa25.69■■□□□ 1.7
SKA3-205ENST00000465471 SLC51AQ86UW1 340 aa25.69■■□□□ 1.7
SKA3-205ENST00000465471 CELF1Q92879 486 aaKnown RBP25.69■■□□□ 1.7
SKA3-205ENST00000465471 YTHDC1Q96MU7 727 aaKnown RBP25.69■■□□□ 1.7
SKA3-205ENST00000465471 C9orf78Q9NZ63 289 aaPredicted RBP25.69■■□□□ 1.7
SKA3-205ENST00000465471 ATP6V0A2Q9Y487 856 aa25.69■■□□□ 1.7
SKA3-205ENST00000465471 NBPF7P0C2Y1 421 aaPredicted RBP25.68■■□□□ 1.7
SKA3-205ENST00000465471 PRELPP51888 382 aa25.68■■□□□ 1.7
SKA3-205ENST00000465471 FOXO4P98177 505 aa25.68■■□□□ 1.7
SKA3-205ENST00000465471 INTS3Q68E01 1043 aaKnown RBP25.68■■□□□ 1.7
SKA3-205ENST00000465471 CC2D2BQ6DHV5 1058 aa25.68■■□□□ 1.7
SKA3-205ENST00000465471 FRAT1Q92837 279 aaPredicted RBP25.68■■□□□ 1.7
SKA3-205ENST00000465471 USP44Q9H0E7 712 aa25.68■■□□□ 1.7
SKA3-205ENST00000465471 SEC31BQ9NQW1 1179 aa25.68■■□□□ 1.7
SKA3-205ENST00000465471 CCDC88AQ3V6T2 1871 aa25.67■■□□□ 1.7
SKA3-205ENST00000465471 ZKSCAN2Q63HK3 967 aa25.67■■□□□ 1.7
SKA3-205ENST00000465471 TMC4Q7Z404 712 aa25.67■■□□□ 1.7
SKA3-205ENST00000465471 TNNQ9UQP3 1299 aa25.67■■□□□ 1.7
SKA3-205ENST00000465471 RTKN2Q8IZC4 609 aa25.66■■□□□ 1.7
SKA3-205ENST00000465471 KAZALD1Q96I82 304 aa25.66■■□□□ 1.7
SKA3-205ENST00000465471 GREM2Q9H772 168 aa25.66■■□□□ 1.7
SKA3-205ENST00000465471 DICER1Q9UPY3 1922 aaKnown RBP25.66■■□□□ 1.7
SKA3-205ENST00000465471 LTBP1Q14766 1721 aa25.66■■□□□ 1.7
SKA3-205ENST00000465471 GRIPAP1Q4V328 841 aa25.65■■□□□ 1.7
SKA3-205ENST00000465471 EPHA10Q5JZY3 1008 aa25.65■■□□□ 1.7
SKA3-205ENST00000465471 SP8Q8IXZ3 490 aa25.65■■□□□ 1.7
SKA3-205ENST00000465471 CCDC85AQ96PX6 553 aaPredicted RBP25.65■■□□□ 1.7
SKA3-205ENST00000465471 TAOK3Q9H2K8 898 aa25.65■■□□□ 1.7
SKA3-205ENST00000465471 RPS8P62241 208 aaKnown RBP25.64■■□□□ 1.7
SKA3-205ENST00000465471 SUCLG2Q96I99 432 aa25.64■■□□□ 1.7
SKA3-205ENST00000465471 PSMD1Q99460 953 aa25.64■■□□□ 1.7
SKA3-205ENST00000465471 RCAN3Q9UKA8 241 aa25.64■■□□□ 1.7
SKA3-205ENST00000465471 TIAM2Q8IVF5 1701 aa25.63■■□□□ 1.69
SKA3-205ENST00000465471 FKBP4Q02790 459 aaKnown RBP eCLIP25.63■■□□□ 1.69
SKA3-205ENST00000465471 FAM161AQ3B820 660 aa25.63■■□□□ 1.69
SKA3-205ENST00000465471 DUOX1Q9NRD9 1551 aa25.63■■□□□ 1.69
SKA3-205ENST00000465471 SPEF2Q9C093 1822 aa25.63■■□□□ 1.69
SKA3-205ENST00000465471 LMNB1P20700 586 aa25.62■■□□□ 1.69
SKA3-205ENST00000465471 YY1P25490 414 aa25.62■■□□□ 1.69
SKA3-205ENST00000465471 C9orf131Q5VYM1 1079 aa25.62■■□□□ 1.69
SKA3-205ENST00000465471 RABL6Q3YEC7 729 aaPredicted RBP25.61■■□□□ 1.69
SKA3-205ENST00000465471 CDC5LQ99459 802 aaKnown RBP25.61■■□□□ 1.69
SKA3-205ENST00000465471 ITGA6P23229 1130 aa25.6■■□□□ 1.69
SKA3-205ENST00000465471 LMBR1LQ6UX01 489 aa25.6■■□□□ 1.69
SKA3-205ENST00000465471 ANKRD18AQ8IVF6 992 aa25.59■■□□□ 1.69
SKA3-205ENST00000465471 ANKRD44Q8N8A2 993 aa25.59■■□□□ 1.69
SKA3-205ENST00000465471 CLUAP1Q96AJ1 413 aa25.59■■□□□ 1.69
SKA3-205ENST00000465471 RTFDC1Q9BY42 306 aaPredicted RBP25.59■■□□□ 1.69
SKA3-205ENST00000465471 RNF181Q9P0P0 153 aa25.59■■□□□ 1.69
SKA3-205ENST00000465471 BICC1Q9H694 974 aaKnown RBP25.58■■□□□ 1.69
SKA3-205ENST00000465471 ZC3H4Q9UPT8 1303 aaKnown RBP25.58■■□□□ 1.69
SKA3-205ENST00000465471 RLBP1P12271 317 aa25.57■■□□□ 1.68
SKA3-205ENST00000465471 TMEM57Q8N5G2 664 aa25.57■■□□□ 1.68
SKA3-205ENST00000465471 MEIS3Q99687 375 aa25.57■■□□□ 1.68
SKA3-205ENST00000465471 TMX4Q9H1E5 349 aaPredicted RBP25.57■■□□□ 1.68
SKA3-205ENST00000465471 DZIP1LQ8IYY4 767 aaKnown RBP25.56■■□□□ 1.68
SKA3-205ENST00000465471 BSDC1Q9NW68 430 aaPredicted RBP25.56■■□□□ 1.68
SKA3-205ENST00000465471 COL4A5P29400 1685 aa25.55■■□□□ 1.68
SKA3-205ENST00000465471 A0A1B0GUL6 1792 aa25.55■■□□□ 1.68
SKA3-205ENST00000465471 UBTFL1P0CB47 393 aaPredicted RBP25.55■■□□□ 1.68
SKA3-205ENST00000465471 MPNDQ8N594 471 aa25.55■■□□□ 1.68
SKA3-205ENST00000465471 ZNF277Q9NRM2 450 aaPredicted RBP25.55■■□□□ 1.68
SKA3-205ENST00000465471 PODXL2Q9NZ53 605 aa25.55■■□□□ 1.68
SKA3-205ENST00000465471 ANKRD18BA2A2Z9 1011 aa25.54■■□□□ 1.68
SKA3-205ENST00000465471 IARSP41252 1262 aaKnown RBP25.54■■□□□ 1.68
SKA3-205ENST00000465471 IFIT5Q13325 482 aaKnown RBP25.54■■□□□ 1.68
SKA3-205ENST00000465471 DPP8Q6V1X1 898 aaPredicted RBP25.54■■□□□ 1.68
SKA3-205ENST00000465471 FTSJ3Q8IY81 847 aaKnown RBP25.54■■□□□ 1.68
SKA3-205ENST00000465471 IGHMBP2P38935 993 aaKnown RBP25.53■■□□□ 1.68
SKA3-205ENST00000465471 GPSM2P81274 684 aa25.53■■□□□ 1.68
SKA3-205ENST00000465471 GNAI3P08754 354 aa25.52■■□□□ 1.68
SKA3-205ENST00000465471 SUPT20HQ8NEM7 779 aa25.52■■□□□ 1.68
SKA3-205ENST00000465471 VPS33BQ9H267 617 aa25.52■■□□□ 1.68
SKA3-205ENST00000465471 CHMP3Q9Y3E7 222 aa25.52■■□□□ 1.68
SKA3-205ENST00000465471 CCDC57Q2TAC2 916 aa25.51■■□□□ 1.67
SKA3-205ENST00000465471 MINPP1Q9UNW1 487 aa25.51■■□□□ 1.67
SKA3-205ENST00000465471 HDAC5Q9UQL6 1122 aa25.51■■□□□ 1.67
SKA3-205ENST00000465471 NSFL1CQ9UNZ2 370 aaKnown RBP25.5■■□□□ 1.67
SKA3-205ENST00000465471 LRRFIP2Q9Y608 721 aaKnown RBP25.5■■□□□ 1.67
SKA3-205ENST00000465471 XDHP47989 1333 aa25.49■■□□□ 1.67
SKA3-205ENST00000465471 MS4A1P11836 297 aa25.49■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms