RNA–Protein interactions for RNA: ENST00000463818.1

SF3A1-205, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-205ENST00000463818 WWC1Q8IX03 1113 aa24.35■■□□□ 1.49
SF3A1-205ENST00000463818 TSR2Q969E8 191 aaKnown RBP24.35■■□□□ 1.49
SF3A1-205ENST00000463818 IRS4O14654 1257 aaPredicted RBP24.34■■□□□ 1.49
SF3A1-205ENST00000463818 PNMA8AQ86V59 439 aaPredicted RBP24.34■■□□□ 1.49
SF3A1-205ENST00000463818 COL4A5P29400 1685 aa24.34■■□□□ 1.49
SF3A1-205ENST00000463818 TMC4Q7Z404 712 aa24.33■■□□□ 1.49
SF3A1-205ENST00000463818 MYD88Q99836 296 aa24.33■■□□□ 1.49
SF3A1-205ENST00000463818 ITGBL1O95965 494 aaPredicted RBP24.31■■□□□ 1.48
SF3A1-205ENST00000463818 LMOD1P29536 600 aaPredicted RBP24.31■■□□□ 1.48
SF3A1-205ENST00000463818 ZBTB38Q8NAP3 1195 aaPredicted RBP24.31■■□□□ 1.48
SF3A1-205ENST00000463818 CELF1Q92879 486 aaKnown RBP24.31■■□□□ 1.48
SF3A1-205ENST00000463818 CREBZFQ9NS37 354 aa24.31■■□□□ 1.48
SF3A1-205ENST00000463818 ZNRF3Q9ULT6 936 aa24.31■■□□□ 1.48
SF3A1-205ENST00000463818 PASKQ96RG2 1323 aa24.31■■□□□ 1.48
SF3A1-205ENST00000463818 DDX58O95786 925 aaKnown RBP24.3■■□□□ 1.48
SF3A1-205ENST00000463818 EPS15P42566 896 aa24.3■■□□□ 1.48
SF3A1-205ENST00000463818 METTL22Q9BUU2 404 aaPredicted RBP24.3■■□□□ 1.48
SF3A1-205ENST00000463818 ANKRD36CQ5JPF3 1778 aa24.29■■□□□ 1.48
SF3A1-205ENST00000463818 SCNN1DP51172 638 aa24.29■■□□□ 1.48
SF3A1-205ENST00000463818 CXCL9Q07325 125 aa24.29■■□□□ 1.48
SF3A1-205ENST00000463818 KIAA2012Q0VF49 1180 aa24.29■■□□□ 1.48
SF3A1-205ENST00000463818 NCBP3Q53F19 620 aaKnown RBP24.29■■□□□ 1.48
SF3A1-205ENST00000463818 MAP1SQ66K74 1059 aaPredicted RBP24.29■■□□□ 1.48
SF3A1-205ENST00000463818 CCDC191Q8NCU4 936 aa24.29■■□□□ 1.48
SF3A1-205ENST00000463818 SCN4AP35499 1836 aa24.28■■□□□ 1.48
SF3A1-205ENST00000463818 CNTROBQ8N137 903 aa24.28■■□□□ 1.48
SF3A1-205ENST00000463818 JARID2Q92833 1246 aaPredicted RBP24.28■■□□□ 1.48
SF3A1-205ENST00000463818 PCCAP05165 728 aaPredicted RBP24.27■■□□□ 1.48
SF3A1-205ENST00000463818 HSP90B1P14625 803 aaKnown RBP24.27■■□□□ 1.48
SF3A1-205ENST00000463818 IFFO2Q5TF58 517 aa24.27■■□□□ 1.48
SF3A1-205ENST00000463818 STK31Q9BXU1 1019 aa24.27■■□□□ 1.48
SF3A1-205ENST00000463818 CWC25Q9NXE8 425 aaPredicted RBP24.27■■□□□ 1.48
SF3A1-205ENST00000463818 NSFL1CQ9UNZ2 370 aaKnown RBP24.27■■□□□ 1.48
SF3A1-205ENST00000463818 MAP3K2Q9Y2U5 619 aa24.27■■□□□ 1.48
SF3A1-205ENST00000463818 SALL2Q9Y467 1007 aaPredicted RBP24.27■■□□□ 1.48
SF3A1-205ENST00000463818 IL16Q14005 1332 aa24.27■■□□□ 1.48
SF3A1-205ENST00000463818 RPS8P62241 208 aaKnown RBP24.26■■□□□ 1.47
SF3A1-205ENST00000463818 TWISTNBQ3B726 338 aaPredicted RBP24.26■■□□□ 1.47
SF3A1-205ENST00000463818 KSR2Q6VAB6 950 aa24.26■■□□□ 1.47
SF3A1-205ENST00000463818 PI4KAP2A4QPH2 592 aa24.25■■□□□ 1.47
SF3A1-205ENST00000463818 CIAPIN1Q6FI81 312 aa24.25■■□□□ 1.47
SF3A1-205ENST00000463818 PI4KAP1Q8N8J0 262 aa24.25■■□□□ 1.47
SF3A1-205ENST00000463818 MKRN1Q9UHC7 482 aaKnown RBP24.25■■□□□ 1.47
SF3A1-205ENST00000463818 TMEM88BA6NKF7 163 aa24.24■■□□□ 1.47
SF3A1-205ENST00000463818 RAD17O75943 681 aa24.24■■□□□ 1.47
SF3A1-205ENST00000463818 GPSM2P81274 684 aa24.24■■□□□ 1.47
SF3A1-205ENST00000463818 SEC31BQ9NQW1 1179 aa24.24■■□□□ 1.47
SF3A1-205ENST00000463818 PDE8AO60658 829 aa24.23■■□□□ 1.47
SF3A1-205ENST00000463818 SLC4A2P04920 1241 aa24.23■■□□□ 1.47
SF3A1-205ENST00000463818 WASHC4Q2M389 1173 aa24.23■■□□□ 1.47
SF3A1-205ENST00000463818 USP50Q70EL3 339 aaPredicted RBP24.23■■□□□ 1.47
SF3A1-205ENST00000463818 GPRC5DQ9NZD1 345 aa24.23■■□□□ 1.47
SF3A1-205ENST00000463818 LAMB2P55268 1798 aa24.23■■□□□ 1.47
SF3A1-205ENST00000463818 C6orf229H3BNL8 230 aa24.22■■□□□ 1.47
SF3A1-205ENST00000463818 GMPSP49915 693 aaPredicted RBP24.22■■□□□ 1.47
SF3A1-205ENST00000463818 TNIP1Q15025 636 aa24.22■■□□□ 1.47
SF3A1-205ENST00000463818 G2E3Q7L622 706 aa24.22■■□□□ 1.47
SF3A1-205ENST00000463818 WDR63Q8IWG1 891 aa24.22■■□□□ 1.47
SF3A1-205ENST00000463818 POLLQ9UGP5 575 aa24.22■■□□□ 1.47
SF3A1-205ENST00000463818 YDJCA8MPS7 323 aa24.21■■□□□ 1.47
SF3A1-205ENST00000463818 RIMBP2O15034 1052 aa24.21■■□□□ 1.47
SF3A1-205ENST00000463818 IGKV5-2P06315 115 aa24.21■■□□□ 1.47
SF3A1-205ENST00000463818 CCDC152Q4G0S7 254 aa24.21■■□□□ 1.47
SF3A1-205ENST00000463818 CCDC85AQ96PX6 553 aaPredicted RBP24.21■■□□□ 1.47
SF3A1-205ENST00000463818 ADARB2Q9NS39 739 aaKnown RBP24.21■■□□□ 1.47
SF3A1-205ENST00000463818 BCL2L13Q9BXK5 485 aa24.2■■□□□ 1.46
SF3A1-205ENST00000463818 DDX60Q8IY21 1712 aaKnown RBP24.19■■□□□ 1.46
SF3A1-205ENST00000463818 NEXNQ0ZGT2 675 aa24.19■■□□□ 1.46
SF3A1-205ENST00000463818 FANCIQ9NVI1 1328 aa24.18■■□□□ 1.46
SF3A1-205ENST00000463818 TAF1P21675 1872 aa24.18■■□□□ 1.46
SF3A1-205ENST00000463818 HSPA1AP0DMV8 641 aaKnown RBP24.18■■□□□ 1.46
SF3A1-205ENST00000463818 HSPA1BP0DMV9 641 aaKnown RBP24.18■■□□□ 1.46
SF3A1-205ENST00000463818 FAM9BQ8IZU0 186 aa24.18■■□□□ 1.46
SF3A1-205ENST00000463818 TBC1D16Q8TBP0 767 aa24.18■■□□□ 1.46
SF3A1-205ENST00000463818 EYA3Q99504 573 aa24.18■■□□□ 1.46
SF3A1-205ENST00000463818 CDHR2Q9BYE9 1310 aa24.17■■□□□ 1.46
SF3A1-205ENST00000463818 VAMP4O75379 141 aa24.17■■□□□ 1.46
SF3A1-205ENST00000463818 CWF19L2Q2TBE0 894 aaKnown RBP24.17■■□□□ 1.46
SF3A1-205ENST00000463818 GPR101Q96P66 508 aaPredicted RBP24.17■■□□□ 1.46
SF3A1-205ENST00000463818 DBNDD1Q9H9R9 158 aa24.17■■□□□ 1.46
SF3A1-205ENST00000463818 LTBP1Q14766 1721 aa24.17■■□□□ 1.46
SF3A1-205ENST00000463818 CNTNAP1P78357 1384 aa24.16■■□□□ 1.46
SF3A1-205ENST00000463818 ADAMTSL1Q8N6G6 1762 aa24.16■■□□□ 1.46
SF3A1-205ENST00000463818 FMR1Q06787 632 aaKnown RBP eCLIP24.16■■□□□ 1.462e-8■■□□□ 12
SF3A1-205ENST00000463818 DOK7Q18PE1 504 aa24.16■■□□□ 1.46
SF3A1-205ENST00000463818 PODXL2Q9NZ53 605 aa24.16■■□□□ 1.46
SF3A1-205ENST00000463818 ANKIB1Q9P2G1 1089 aa24.16■■□□□ 1.46
SF3A1-205ENST00000463818 CNOT7Q9UIV1 285 aaKnown RBP24.16■■□□□ 1.46
SF3A1-205ENST00000463818 NEURL1BA8MQ27 555 aa24.15■■□□□ 1.46
SF3A1-205ENST00000463818 VEGFBP49765 207 aa24.15■■□□□ 1.46
SF3A1-205ENST00000463818 EXOSC9Q06265 439 aaKnown RBP24.15■■□□□ 1.46
SF3A1-205ENST00000463818 FLIIQ13045 1269 aa24.15■■□□□ 1.46
SF3A1-205ENST00000463818 COL13A1Q5TAT6 717 aaPredicted RBP24.15■■□□□ 1.46
SF3A1-205ENST00000463818 ANKRD18AQ8IVF6 992 aa24.15■■□□□ 1.46
SF3A1-205ENST00000463818 ZC3H12CQ9C0D7 883 aaKnown RBP24.15■■□□□ 1.46
SF3A1-205ENST00000463818 COL4A1P02462 1669 aa24.15■■□□□ 1.46
SF3A1-205ENST00000463818 H7C1W4 665 aa24.14■■□□□ 1.45
SF3A1-205ENST00000463818 PSMD14O00487 310 aa24.14■■□□□ 1.45
SF3A1-205ENST00000463818 KCNQ5Q9NR82 932 aa24.14■■□□□ 1.45
SF3A1-205ENST00000463818 DUOX1Q9NRD9 1551 aa24.14■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms