RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 INTS3Q68E01 1043 aaKnown RBP9.7□□□□□ -0.86
USP4-207ENST00000462673 PPP4R3CPQ6ZMV5 832 aa9.7□□□□□ -0.86
USP4-207ENST00000462673 UBE3BQ7Z3V4 1068 aa9.7□□□□□ -0.86
USP4-207ENST00000462673 RTKN2Q8IZC4 609 aa9.7□□□□□ -0.86
USP4-207ENST00000462673 CDC5LQ99459 802 aaKnown RBP9.7□□□□□ -0.86
USP4-207ENST00000462673 PLA2G12BQ9BX93 195 aa9.7□□□□□ -0.86
USP4-207ENST00000462673 UBTFL1P0CB47 393 aaPredicted RBP9.69□□□□□ -0.86
USP4-207ENST00000462673 KCNA3P22001 575 aa9.69□□□□□ -0.86
USP4-207ENST00000462673 CHRNA5P30532 468 aa9.69□□□□□ -0.86
USP4-207ENST00000462673 PDE3AQ14432 1141 aa9.69□□□□□ -0.86
USP4-207ENST00000462673 CCDC57Q2TAC2 916 aa9.69□□□□□ -0.86
USP4-207ENST00000462673 CCDC24Q8N4L8 307 aa9.69□□□□□ -0.86
USP4-207ENST00000462673 NLGN2Q8NFZ4 835 aa9.69□□□□□ -0.86
USP4-207ENST00000462673 UTYO14607 1347 aa9.68□□□□□ -0.86
USP4-207ENST00000462673 ANKRD18BA2A2Z9 1011 aa9.68□□□□□ -0.86
USP4-207ENST00000462673 TRIM27P14373 513 aa9.68□□□□□ -0.86
USP4-207ENST00000462673 IGHMBP2P38935 993 aaKnown RBP9.68□□□□□ -0.86
USP4-207ENST00000462673 RPS8P62241 208 aaKnown RBP9.68□□□□□ -0.86
USP4-207ENST00000462673 IFIT5Q13325 482 aaKnown RBP9.68□□□□□ -0.86
USP4-207ENST00000462673 GRAPQ13588 217 aa9.68□□□□□ -0.86
USP4-207ENST00000462673 TAF7LQ5H9L4 462 aa9.68□□□□□ -0.86
USP4-207ENST00000462673 ARHGAP27Q6ZUM4 889 aa9.68□□□□□ -0.86
USP4-207ENST00000462673 ANKRD18AQ8IVF6 992 aa9.68□□□□□ -0.86
USP4-207ENST00000462673 SP8Q8IXZ3 490 aa9.68□□□□□ -0.86
USP4-207ENST00000462673 SUPT20HQ8NEM7 779 aa9.68□□□□□ -0.86
USP4-207ENST00000462673 GRAPLQ8TC17 118 aaPredicted RBP9.68□□□□□ -0.86
USP4-207ENST00000462673 MPHOSPH8Q99549 860 aa9.68□□□□□ -0.86
USP4-207ENST00000462673 PXDNLA1KZ92 1463 aa9.67□□□□□ -0.86
USP4-207ENST00000462673 CSF1RP07333 972 aa9.67□□□□□ -0.86
USP4-207ENST00000462673 CTSWP56202 376 aa9.67□□□□□ -0.86
USP4-207ENST00000462673 CCDC93Q567U6 631 aa9.67□□□□□ -0.86
USP4-207ENST00000462673 PRPF40BQ6NWY9 871 aaKnown RBP9.67□□□□□ -0.86
USP4-207ENST00000462673 TTLL11Q8NHH1 800 aa9.67□□□□□ -0.86
USP4-207ENST00000462673 CLUAP1Q96AJ1 413 aa9.67□□□□□ -0.86
USP4-207ENST00000462673 USP44Q9H0E7 712 aa9.67□□□□□ -0.86
USP4-207ENST00000462673 VPS33BQ9H267 617 aa9.67□□□□□ -0.86
USP4-207ENST00000462673 DDX19BQ9UMR2 479 aa9.67□□□□□ -0.86
USP4-207ENST00000462673 CHMP3Q9Y3E7 222 aa9.67□□□□□ -0.86
USP4-207ENST00000462673 NRXN2Q9P2S2 1712 aa9.67□□□□□ -0.86
USP4-207ENST00000462673 ANKRD36CQ5JPF3 1778 aa9.66□□□□□ -0.86
USP4-207ENST00000462673 ARFGEF2Q9Y6D5 1785 aa9.66□□□□□ -0.86
USP4-207ENST00000462673 ABCC4O15439 1325 aa9.66□□□□□ -0.86
USP4-207ENST00000462673 PPEF1O14829 653 aaPredicted RBP9.66□□□□□ -0.86
USP4-207ENST00000462673 C21orf2O43822 256 aa9.66□□□□□ -0.86
USP4-207ENST00000462673 GNAI2P04899 355 aa9.66□□□□□ -0.86
USP4-207ENST00000462673 PDE4AP27815 886 aa9.66□□□□□ -0.86
USP4-207ENST00000462673 AAMPQ13685 434 aa9.66□□□□□ -0.86
USP4-207ENST00000462673 ITPRIPQ8IWB1 547 aa9.66□□□□□ -0.86
USP4-207ENST00000462673 BACH2Q9BYV9 841 aa9.66□□□□□ -0.86
USP4-207ENST00000462673 ATP6V0A2Q9Y487 856 aa9.66□□□□□ -0.86
USP4-207ENST00000462673 AFDNP55196 1824 aaKnown RBP9.66□□□□□ -0.86
USP4-207ENST00000462673 NBPF7P0C2Y1 421 aaPredicted RBP9.65□□□□□ -0.86
USP4-207ENST00000462673 ITGA6P23229 1130 aa9.65□□□□□ -0.86
USP4-207ENST00000462673 LMBR1LQ6UX01 489 aa9.65□□□□□ -0.86
USP4-207ENST00000462673 SYNE4Q8N205 404 aa9.65□□□□□ -0.86
USP4-207ENST00000462673 ANKRD2Q9GZV1 360 aa9.65□□□□□ -0.86
USP4-207ENST00000462673 BSDC1Q9NW68 430 aaPredicted RBP9.65□□□□□ -0.86
USP4-207ENST00000462673 KIF13BQ9NQT8 1826 aa9.65□□□□□ -0.86
USP4-207ENST00000462673 RTL9Q8NET4 1388 aa9.64□□□□□ -0.87
USP4-207ENST00000462673 G3V3G9 751 aa9.64□□□□□ -0.87
USP4-207ENST00000462673 CASP7P55210 303 aa9.64□□□□□ -0.87
USP4-207ENST00000462673 FOXO4P98177 505 aa9.64□□□□□ -0.87
USP4-207ENST00000462673 DCAF8Q5TAQ9 597 aa9.64□□□□□ -0.87
USP4-207ENST00000462673 LDHAL6AQ6ZMR3 332 aa9.64□□□□□ -0.87
USP4-207ENST00000462673 MPNDQ8N594 471 aa9.64□□□□□ -0.87
USP4-207ENST00000462673 TMEM57Q8N5G2 664 aa9.64□□□□□ -0.87
USP4-207ENST00000462673 EXOC6Q8TAG9 804 aa9.64□□□□□ -0.87
USP4-207ENST00000462673 JARID2Q92833 1246 aaPredicted RBP9.64□□□□□ -0.87
USP4-207ENST00000462673 EYA3Q99504 573 aa9.64□□□□□ -0.87
USP4-207ENST00000462673 TAOK3Q9H2K8 898 aa9.64□□□□□ -0.87
USP4-207ENST00000462673 ANKIB1Q9P2G1 1089 aa9.64□□□□□ -0.87
USP4-207ENST00000462673 FBXO3Q9UK99 471 aa9.64□□□□□ -0.87
USP4-207ENST00000462673 ABCC12Q96J65 1359 aa9.63□□□□□ -0.87
USP4-207ENST00000462673 ZBTB7BO15156 539 aaPredicted RBP9.63□□□□□ -0.87
USP4-207ENST00000462673 LMNB1P20700 586 aa9.63□□□□□ -0.87
USP4-207ENST00000462673 MVPQ14764 893 aaKnown RBP9.63□□□□□ -0.87
USP4-207ENST00000462673 DPY19L2Q6NUT2 758 aa9.63□□□□□ -0.87
USP4-207ENST00000462673 DPP8Q6V1X1 898 aaPredicted RBP9.63□□□□□ -0.87
USP4-207ENST00000462673 IL27Q8NEV9 243 aa9.63□□□□□ -0.87
USP4-207ENST00000462673 JDP2Q8WYK2 163 aa9.63□□□□□ -0.87
USP4-207ENST00000462673 PSMD1Q99460 953 aa9.63□□□□□ -0.87
USP4-207ENST00000462673 ZC3H12CQ9C0D7 883 aaKnown RBP9.63□□□□□ -0.87
USP4-207ENST00000462673 GREM2Q9H772 168 aa9.63□□□□□ -0.87
USP4-207ENST00000462673 CNNM1Q9NRU3 951 aa9.63□□□□□ -0.87
USP4-207ENST00000462673 ZNF219Q9P2Y4 722 aaPredicted RBP9.63□□□□□ -0.87
USP4-207ENST00000462673 NSFL1CQ9UNZ2 370 aaKnown RBP9.63□□□□□ -0.87
USP4-207ENST00000462673 HMMRO75330 724 aa9.62□□□□□ -0.87
USP4-207ENST00000462673 YBX3P16989 372 aaKnown RBP eCLIP9.62□□□□□ -0.87
USP4-207ENST00000462673 ATP2B4P23634 1241 aa9.62□□□□□ -0.87
USP4-207ENST00000462673 FKBP4Q02790 459 aaKnown RBP eCLIP9.62□□□□□ -0.87
USP4-207ENST00000462673 RABL6Q3YEC7 729 aaPredicted RBP9.62□□□□□ -0.87
USP4-207ENST00000462673 RPAP2Q8IXW5 612 aaPredicted RBP9.62□□□□□ -0.87
USP4-207ENST00000462673 C7orf43Q8WVR3 580 aa9.62□□□□□ -0.87
USP4-207ENST00000462673 SUCLG2Q96I99 432 aa9.62□□□□□ -0.87
USP4-207ENST00000462673 CCDC85AQ96PX6 553 aaPredicted RBP9.62□□□□□ -0.87
USP4-207ENST00000462673 BICC1Q9H694 974 aaKnown RBP9.62□□□□□ -0.87
USP4-207ENST00000462673 WWC3Q9ULE0 1092 aa9.62□□□□□ -0.87
USP4-207ENST00000462673 LEMD3Q9Y2U8 911 aa9.62□□□□□ -0.87
USP4-207ENST00000462673 LTBP3Q9NS15 1303 aa9.61□□□□□ -0.87
USP4-207ENST00000462673 C6orf229H3BNL8 230 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms