RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 RGS17Q9UGC6 210 aaPredicted RBP11.02□□□□□ -0.65
USP54-208ENST00000461520 USP3Q9Y6I4 520 aa11.02□□□□□ -0.65
USP54-208ENST00000461520 ARHGEF15O94989 841 aa11.01□□□□□ -0.65
USP54-208ENST00000461520 CSB-PGBD3P0DP91 1061 aa11.01□□□□□ -0.65
USP54-208ENST00000461520 ITGAEP38570 1179 aa11.01□□□□□ -0.65
USP54-208ENST00000461520 PSME1Q06323 249 aa11.01□□□□□ -0.65
USP54-208ENST00000461520 PGBD3Q8N328 593 aa11.01□□□□□ -0.65
USP54-208ENST00000461520 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.01□□□□□ -0.65
USP54-208ENST00000461520 SLC26A8Q96RN1 970 aa11.01□□□□□ -0.65
USP54-208ENST00000461520 NIFKQ9BYG3 293 aaKnown RBP11.01□□□□□ -0.65
USP54-208ENST00000461520 NUP155O75694 1391 aa11.01□□□□□ -0.65
USP54-208ENST00000461520 ZFYVE9O95405 1425 aa11.01□□□□□ -0.65
USP54-208ENST00000461520 IQGAP3Q86VI3 1631 aa11□□□□□ -0.65
USP54-208ENST00000461520 A6NJY4 79 aa11□□□□□ -0.65
USP54-208ENST00000461520 CELA2BP08218 269 aaPredicted RBP11□□□□□ -0.65
USP54-208ENST00000461520 FNBP4Q8N3X1 1017 aaPredicted RBP11□□□□□ -0.65
USP54-208ENST00000461520 AIDAQ96BJ3 306 aa11□□□□□ -0.65
USP54-208ENST00000461520 ROBO1Q9Y6N7 1651 aa11□□□□□ -0.65
USP54-208ENST00000461520 PLEKHG1Q9ULL1 1385 aa11□□□□□ -0.65
USP54-208ENST00000461520 TMEM131LA2VDJ0 1609 aa10.99□□□□□ -0.65
USP54-208ENST00000461520 MX2P20592 715 aa10.99□□□□□ -0.65
USP54-208ENST00000461520 UBAP2LQ14157 1087 aaKnown RBP10.99□□□□□ -0.65
USP54-208ENST00000461520 PROSER2Q86WR7 435 aaPredicted RBP10.99□□□□□ -0.65
USP54-208ENST00000461520 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.99□□□□□ -0.65
USP54-208ENST00000461520 IQSEC3Q9UPP2 1182 aaPredicted RBP10.99□□□□□ -0.65
USP54-208ENST00000461520 TMEM94Q12767 1356 aa10.99□□□□□ -0.65
USP54-208ENST00000461520 FAM135BQ49AJ0 1406 aa10.99□□□□□ -0.65
USP54-208ENST00000461520 RIMS2Q9UQ26 1411 aa10.99□□□□□ -0.65
USP54-208ENST00000461520 E9PCH4 1651 aa10.98□□□□□ -0.65
USP54-208ENST00000461520 CDK2AP1O14519 115 aa10.98□□□□□ -0.65
USP54-208ENST00000461520 PPP1R15AO75807 674 aaPredicted RBP10.98□□□□□ -0.65
USP54-208ENST00000461520 MTFR1Q15390 333 aa10.98□□□□□ -0.65
USP54-208ENST00000461520 ZNF295-AS1Q8N0V1 137 aa10.98□□□□□ -0.65
USP54-208ENST00000461520 NKTRP30414 1462 aaKnown RBP10.98□□□□□ -0.65
USP54-208ENST00000461520 USP17L3A6NCW0 530 aa10.97□□□□□ -0.65
USP54-208ENST00000461520 USP17L4A6NCW7 530 aa10.97□□□□□ -0.65
USP54-208ENST00000461520 EFHC2Q5JST6 749 aa10.97□□□□□ -0.65
USP54-208ENST00000461520 USP17L2Q6R6M4 530 aa10.97□□□□□ -0.65
USP54-208ENST00000461520 USP17L1Q7RTZ2 530 aa10.97□□□□□ -0.65
USP54-208ENST00000461520 ACDQ96AP0 544 aa10.97□□□□□ -0.65
USP54-208ENST00000461520 CFHR5Q9BXR6 569 aa10.97□□□□□ -0.65
USP54-208ENST00000461520 ZNF358Q9NW07 568 aa10.97□□□□□ -0.65
USP54-208ENST00000461520 RRBP1Q9P2E9 1410 aaKnown RBP10.97□□□□□ -0.65
USP54-208ENST00000461520 NWD1Q149M9 1564 aa10.97□□□□□ -0.65
USP54-208ENST00000461520 ATP9BO43861 1147 aa10.96□□□□□ -0.65
USP54-208ENST00000461520 MAP3K10Q02779 954 aa10.96□□□□□ -0.65
USP54-208ENST00000461520 CABP1Q9NZU7 370 aa10.96□□□□□ -0.65
USP54-208ENST00000461520 TBX22Q9Y458 520 aa10.96□□□□□ -0.65
USP54-208ENST00000461520 PARP3Q9Y6F1 533 aa10.96□□□□□ -0.65
USP54-208ENST00000461520 BACH1O14867 736 aa10.95□□□□□ -0.66
USP54-208ENST00000461520 ZBTB7BO15156 539 aaPredicted RBP10.95□□□□□ -0.66
USP54-208ENST00000461520 ATP4AP20648 1035 aa10.95□□□□□ -0.66
USP54-208ENST00000461520 GSK3AP49840 483 aa10.95□□□□□ -0.66
USP54-208ENST00000461520 LBRQ14739 615 aaKnown RBP10.95□□□□□ -0.66
USP54-208ENST00000461520 POTEAQ6S8J7 498 aa10.95□□□□□ -0.66
USP54-208ENST00000461520 PLEKHM2Q8IWE5 1019 aa10.95□□□□□ -0.66
USP54-208ENST00000461520 GLMNQ92990 594 aa10.95□□□□□ -0.66
USP54-208ENST00000461520 CRISPLD1Q9H336 500 aa10.95□□□□□ -0.66
USP54-208ENST00000461520 KIAA1024Q9UPX6 916 aa10.95□□□□□ -0.66
USP54-208ENST00000461520 MYO5BQ9ULV0 1848 aa10.95□□□□□ -0.66
USP54-208ENST00000461520 SETD1AO15047 1707 aaKnown RBP10.95□□□□□ -0.66
USP54-208ENST00000461520 CLDN10P78369 228 aa10.94□□□□□ -0.66
USP54-208ENST00000461520 KCNMA1Q12791 1236 aa10.94□□□□□ -0.66
USP54-208ENST00000461520 TRIM50Q86XT4 487 aa10.94□□□□□ -0.66
USP54-208ENST00000461520 TNS4Q8IZW8 715 aa10.94□□□□□ -0.66
USP54-208ENST00000461520 TPCN2Q8NHX9 752 aa10.94□□□□□ -0.66
USP54-208ENST00000461520 ABHD17AQ96GS6 310 aa10.94□□□□□ -0.66
USP54-208ENST00000461520 PHF24Q9UPV7 400 aa10.94□□□□□ -0.66
USP54-208ENST00000461520 PHLPP1O60346 1717 aa10.94□□□□□ -0.66
USP54-208ENST00000461520 NCOA3Q9Y6Q9 1424 aa10.93□□□□□ -0.66
USP54-208ENST00000461520 MSH6P52701 1360 aa10.93□□□□□ -0.66
USP54-208ENST00000461520 PIK3R4Q99570 1358 aa10.93□□□□□ -0.66
USP54-208ENST00000461520 BNIP3LO60238 219 aa10.93□□□□□ -0.66
USP54-208ENST00000461520 MARSP56192 900 aaKnown RBP10.93□□□□□ -0.66
USP54-208ENST00000461520 SCHIP1Q9P0W5 487 aaPredicted RBP10.93□□□□□ -0.66
USP54-208ENST00000461520 MKRN1Q9UHC7 482 aaKnown RBP10.93□□□□□ -0.66
USP54-208ENST00000461520 NSFL1CQ9UNZ2 370 aaKnown RBP10.93□□□□□ -0.66
USP54-208ENST00000461520 DIP2AQ14689 1571 aa10.93□□□□□ -0.66
USP54-208ENST00000461520 ADAMTS13Q76LX8 1427 aa10.92□□□□□ -0.66
USP54-208ENST00000461520 BCRP11274 1271 aa10.92□□□□□ -0.66
USP54-208ENST00000461520 ARSJQ5FYB0 599 aaPredicted RBP10.92□□□□□ -0.66
USP54-208ENST00000461520 TBCELQ5QJ74 424 aa10.92□□□□□ -0.66
USP54-208ENST00000461520 CCDC102BQ68D86 513 aa10.92□□□□□ -0.66
USP54-208ENST00000461520 C1orf216Q8TAB5 229 aa10.92□□□□□ -0.66
USP54-208ENST00000461520 TFIP11Q9UBB9 837 aaKnown RBP10.92□□□□□ -0.66
USP54-208ENST00000461520 CHD2O14647 1828 aaKnown RBP10.92□□□□□ -0.66
USP54-208ENST00000461520 NAIPQ13075 1403 aa10.92□□□□□ -0.66
USP54-208ENST00000461520 NBPF1Q3BBV0 1214 aa10.91□□□□□ -0.66
USP54-208ENST00000461520 OGFOD1Q8N543 542 aa10.91□□□□□ -0.66
USP54-208ENST00000461520 ZCCHC2Q9C0B9 1178 aaKnown RBP10.91□□□□□ -0.66
USP54-208ENST00000461520 NDFIP2Q9NV92 336 aa10.91□□□□□ -0.66
USP54-208ENST00000461520 DNAAF2Q9NVR5 837 aaKnown RBP10.91□□□□□ -0.66
USP54-208ENST00000461520 ATXN7L1Q9ULK2 861 aaPredicted RBP10.91□□□□□ -0.66
USP54-208ENST00000461520 A0A1W2PNR3 127 aa10.9□□□□□ -0.66
USP54-208ENST00000461520 A6NJR5 290 aa10.9□□□□□ -0.66
USP54-208ENST00000461520 ATP1A2P50993 1020 aa10.9□□□□□ -0.66
USP54-208ENST00000461520 EPHA4P54764 986 aa10.9□□□□□ -0.66
USP54-208ENST00000461520 ZDHHC1Q8WTX9 485 aa10.9□□□□□ -0.66
USP54-208ENST00000461520 KLRG1Q96E93 195 aa10.9□□□□□ -0.66
USP54-208ENST00000461520 SLAIN2Q9P270 581 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms