RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 PGAP2Q9UHJ9 254 aa16.12■□□□□ 0.17
HDAC4-207ENST00000461113 TCERG1O14776 1098 aaKnown RBP16.11■□□□□ 0.17
HDAC4-207ENST00000461113 TRPA1O75762 1119 aa16.11■□□□□ 0.17
HDAC4-207ENST00000461113 GMPSP49915 693 aaPredicted RBP16.11■□□□□ 0.17
HDAC4-207ENST00000461113 CRY2Q49AN0 593 aa16.11■□□□□ 0.17
HDAC4-207ENST00000461113 TRPM7Q96QT4 1865 aa16.11■□□□□ 0.17
HDAC4-207ENST00000461113 ERBB4Q15303 1308 aa16.11■□□□□ 0.17
HDAC4-207ENST00000461113 SIPA1L3O60292 1781 aaPredicted RBP16.1■□□□□ 0.17
HDAC4-207ENST00000461113 PRAMEF22A3QJZ6 481 aa16.1■□□□□ 0.17
HDAC4-207ENST00000461113 PPIP5K2O43314 1243 aa16.1■□□□□ 0.17
HDAC4-207ENST00000461113 HIRAP54198 1017 aaPredicted RBP16.1■□□□□ 0.17
HDAC4-207ENST00000461113 KIF23Q02241 960 aaPredicted RBP16.1■□□□□ 0.17
HDAC4-207ENST00000461113 HDGFL1Q5TGJ6 251 aa16.1■□□□□ 0.17
HDAC4-207ENST00000461113 CDC37L1Q7L3B6 337 aa16.1■□□□□ 0.17
HDAC4-207ENST00000461113 CTU1Q7Z7A3 348 aaKnown RBP16.1■□□□□ 0.17
HDAC4-207ENST00000461113 NBPF15Q8N660 670 aa16.1■□□□□ 0.17
HDAC4-207ENST00000461113 TSR2Q969E8 191 aaKnown RBP16.1■□□□□ 0.17
HDAC4-207ENST00000461113 RNF186Q9NXI6 227 aa16.1■□□□□ 0.17
HDAC4-207ENST00000461113 BCORQ6W2J9 1755 aa16.1■□□□□ 0.17
HDAC4-207ENST00000461113 FAM155AB1AL88 458 aaPredicted RBP16.09■□□□□ 0.17
HDAC4-207ENST00000461113 ELL2O00472 640 aaPredicted RBP16.09■□□□□ 0.17
HDAC4-207ENST00000461113 CXCL9Q07325 125 aa16.09■□□□□ 0.17
HDAC4-207ENST00000461113 AOC3Q16853 763 aa16.09■□□□□ 0.17
HDAC4-207ENST00000461113 GRIPAP1Q4V328 841 aa16.09■□□□□ 0.17
HDAC4-207ENST00000461113 RGMBQ6NW40 437 aa16.09■□□□□ 0.17
HDAC4-207ENST00000461113 DLK2Q6UY11 383 aa16.09■□□□□ 0.17
HDAC4-207ENST00000461113 USP48Q86UV5 1035 aa16.09■□□□□ 0.17
HDAC4-207ENST00000461113 GCC1Q96CN9 775 aa16.09■□□□□ 0.17
HDAC4-207ENST00000461113 HLFQ16534 295 aa16.08■□□□□ 0.16
HDAC4-207ENST00000461113 CCDC30Q5VVM6 783 aa16.08■□□□□ 0.16
HDAC4-207ENST00000461113 NUTM1Q86Y26 1132 aa16.08■□□□□ 0.16
HDAC4-207ENST00000461113 ZC3H15Q8WU90 426 aaKnown RBP16.08■□□□□ 0.16
HDAC4-207ENST00000461113 NECTIN2Q92692 538 aa16.08■□□□□ 0.16
HDAC4-207ENST00000461113 RPGRQ92834 1020 aaKnown RBP16.08■□□□□ 0.16
HDAC4-207ENST00000461113 HPS5Q9UPZ3 1129 aa16.08■□□□□ 0.16
HDAC4-207ENST00000461113 FANCIQ9NVI1 1328 aa16.08■□□□□ 0.16
HDAC4-207ENST00000461113 ABCC12Q96J65 1359 aa16.08■□□□□ 0.16
HDAC4-207ENST00000461113 MYL6BP14649 208 aa16.07■□□□□ 0.16
HDAC4-207ENST00000461113 HOXA10P31260 410 aaPredicted RBP16.07■□□□□ 0.16
HDAC4-207ENST00000461113 KRT24Q2M2I5 525 aa16.07■□□□□ 0.16
HDAC4-207ENST00000461113 TWISTNBQ3B726 338 aaPredicted RBP16.07■□□□□ 0.16
HDAC4-207ENST00000461113 HABP4Q5JVS0 413 aaKnown RBP16.07■□□□□ 0.16
HDAC4-207ENST00000461113 KIF6Q6ZMV9 814 aa16.07■□□□□ 0.16
HDAC4-207ENST00000461113 TRPM4Q8TD43 1214 aa16.07■□□□□ 0.16
HDAC4-207ENST00000461113 STK31Q9BXU1 1019 aa16.07■□□□□ 0.16
HDAC4-207ENST00000461113 DBF4Q9UBU7 674 aaPredicted RBP16.07■□□□□ 0.16
HDAC4-207ENST00000461113 ZNRF3Q9ULT6 936 aa16.07■□□□□ 0.16
HDAC4-207ENST00000461113 ZNF521Q96K83 1311 aa16.07■□□□□ 0.16
HDAC4-207ENST00000461113 PPEF1O14829 653 aaPredicted RBP16.06■□□□□ 0.16
HDAC4-207ENST00000461113 RGL2O15211 777 aa16.06■□□□□ 0.16
HDAC4-207ENST00000461113 C8orf58Q8NAV2 365 aa16.06■□□□□ 0.16
HDAC4-207ENST00000461113 BCL2L13Q9BXK5 485 aa16.06■□□□□ 0.16
HDAC4-207ENST00000461113 NBPF26B4DH59 902 aa16.05■□□□□ 0.16
HDAC4-207ENST00000461113 ZNF157P51786 506 aaPredicted RBP16.05■□□□□ 0.16
HDAC4-207ENST00000461113 EXOSC9Q06265 439 aaKnown RBP16.05■□□□□ 0.16
HDAC4-207ENST00000461113 NBPF10Q6P3W6 841 aaKnown RBP16.05■□□□□ 0.16
HDAC4-207ENST00000461113 CCDC102AQ96A19 550 aa16.05■□□□□ 0.16
HDAC4-207ENST00000461113 RBM17Q96I25 401 aaKnown RBP16.05■□□□□ 0.16
HDAC4-207ENST00000461113 NYXQ9GZU5 481 aa16.05■□□□□ 0.16
HDAC4-207ENST00000461113 HYPKQ9NX55 129 aa16.05■□□□□ 0.16
HDAC4-207ENST00000461113 SHTN1A0MZ66 631 aa16.04■□□□□ 0.16
HDAC4-207ENST00000461113 SLFN5Q08AF3 891 aa16.04■□□□□ 0.16
HDAC4-207ENST00000461113 GBA2Q9HCG7 927 aaPredicted RBP16.04■□□□□ 0.16
HDAC4-207ENST00000461113 KDM3BQ7LBC6 1761 aa16.04■□□□□ 0.16
HDAC4-207ENST00000461113 RAD17O75943 681 aa16.03■□□□□ 0.16
HDAC4-207ENST00000461113 C2orf69Q8N8R5 385 aa16.03■□□□□ 0.16
HDAC4-207ENST00000461113 CRAMP1Q96RY5 1269 aa16.03■□□□□ 0.16
HDAC4-207ENST00000461113 CSRNP1Q96S65 589 aa16.03■□□□□ 0.16
HDAC4-207ENST00000461113 VPS33BQ9H267 617 aa16.03■□□□□ 0.16
HDAC4-207ENST00000461113 CNOT7Q9UIV1 285 aaKnown RBP16.03■□□□□ 0.16
HDAC4-207ENST00000461113 CDHR2Q9BYE9 1310 aa16.02■□□□□ 0.16
HDAC4-207ENST00000461113 TNIP1Q15025 636 aa16.02■□□□□ 0.16
HDAC4-207ENST00000461113 TMX4Q9H1E5 349 aaPredicted RBP16.02■□□□□ 0.16
HDAC4-207ENST00000461113 SPINK5Q9NQ38 1064 aaPredicted RBP16.02■□□□□ 0.16
HDAC4-207ENST00000461113 CHPF2Q9P2E5 772 aa16.02■□□□□ 0.16
HDAC4-207ENST00000461113 ZBED9Q6R2W3 1325 aa16.01■□□□□ 0.15
HDAC4-207ENST00000461113 H7C1D1 291 aa16.01■□□□□ 0.15
HDAC4-207ENST00000461113 AIMP1Q12904 312 aaKnown RBP16.01■□□□□ 0.15
HDAC4-207ENST00000461113 TSPYL6Q8N831 410 aa16.01■□□□□ 0.15
HDAC4-207ENST00000461113 ERVV-1B6SEH8 477 aa16■□□□□ 0.15
HDAC4-207ENST00000461113 DDX58O95786 925 aaKnown RBP16■□□□□ 0.15
HDAC4-207ENST00000461113 SLC10A3P09131 477 aa16■□□□□ 0.15
HDAC4-207ENST00000461113 PKN2Q16513 984 aaKnown RBP16■□□□□ 0.15
HDAC4-207ENST00000461113 C3orf67Q6ZVT6 689 aa16■□□□□ 0.15
HDAC4-207ENST00000461113 KRT26Q7Z3Y9 468 aa16■□□□□ 0.15
HDAC4-207ENST00000461113 MICALL2Q8IY33 904 aa16■□□□□ 0.15
HDAC4-207ENST00000461113 SUPT20HQ8NEM7 779 aa16■□□□□ 0.15
HDAC4-207ENST00000461113 CDCA7LQ96GN5 454 aa16■□□□□ 0.15
HDAC4-207ENST00000461113 HDAC9Q9UKV0 1011 aa16■□□□□ 0.15
HDAC4-207ENST00000461113 ATP6V0A2Q9Y487 856 aa16■□□□□ 0.15
HDAC4-207ENST00000461113 RIC1Q4ADV7 1423 aa16■□□□□ 0.15
HDAC4-207ENST00000461113 ADM5C9JUS6 153 aa15.99■□□□□ 0.15
HDAC4-207ENST00000461113 VAMP4O75379 141 aa15.99■□□□□ 0.15
HDAC4-207ENST00000461113 ANXA1P04083 346 aa15.99■□□□□ 0.15
HDAC4-207ENST00000461113 CT47B1P0C2W7 299 aaPredicted RBP15.99■□□□□ 0.15
HDAC4-207ENST00000461113 PDIA6Q15084 440 aa15.99■□□□□ 0.15
HDAC4-207ENST00000461113 COPS6Q7L5N1 327 aa15.99■□□□□ 0.15
HDAC4-207ENST00000461113 XAGE3Q8WTP9 111 aa15.99■□□□□ 0.15
HDAC4-207ENST00000461113 ZNF428Q96B54 188 aa15.99■□□□□ 0.15
HDAC4-207ENST00000461113 RTFDC1Q9BY42 306 aaPredicted RBP15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms