RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 OSBPL3Q9H4L5 887 aa13.7□□□□□ -0.22
NPHP4-204ENST00000460696 ADGRL3Q9HAR2 1447 aa13.7□□□□□ -0.22
NPHP4-204ENST00000460696 ATP6V1AP38606 617 aa13.69□□□□□ -0.22
NPHP4-204ENST00000460696 LDHAL6AQ6ZMR3 332 aa13.69□□□□□ -0.22
NPHP4-204ENST00000460696 MYO3AQ8NEV4 1616 aa13.69□□□□□ -0.22
NPHP4-204ENST00000460696 ZNF830Q96NB3 372 aaPredicted RBP13.69□□□□□ -0.22
NPHP4-204ENST00000460696 TRMT112Q9UI30 125 aaKnown RBP13.69□□□□□ -0.22
NPHP4-204ENST00000460696 CCDC129Q6ZRS4 1044 aa13.69□□□□□ -0.22
NPHP4-204ENST00000460696 CHST3Q7LGC8 479 aa13.69□□□□□ -0.22
NPHP4-204ENST00000460696 EAF2Q96CJ1 260 aaPredicted RBP13.69□□□□□ -0.22
NPHP4-204ENST00000460696 DBNDD2Q9BQY9 259 aa13.69□□□□□ -0.22
NPHP4-204ENST00000460696 PPLO60437 1756 aa13.68□□□□□ -0.22
NPHP4-204ENST00000460696 TMEM63CQ9P1W3 806 aa13.68□□□□□ -0.22
NPHP4-204ENST00000460696 AKAP2Q9Y2D5 859 aa13.68□□□□□ -0.22
NPHP4-204ENST00000460696 ADCY5O95622 1261 aa13.68□□□□□ -0.22
NPHP4-204ENST00000460696 TPM2P07951 284 aa13.68□□□□□ -0.22
NPHP4-204ENST00000460696 KIF2CQ99661 725 aa13.68□□□□□ -0.22
NPHP4-204ENST00000460696 SLC52A2Q9HAB3 445 aa13.68□□□□□ -0.22
NPHP4-204ENST00000460696 MTMR7Q9Y216 660 aa13.68□□□□□ -0.22
NPHP4-204ENST00000460696 MYOM1P52179 1685 aa13.68□□□□□ -0.22
NPHP4-204ENST00000460696 GADD45BO75293 160 aaPredicted RBP13.68□□□□□ -0.22
NPHP4-204ENST00000460696 PTH1RQ03431 593 aa13.68□□□□□ -0.22
NPHP4-204ENST00000460696 GCKRQ14397 625 aa13.68□□□□□ -0.22
NPHP4-204ENST00000460696 RUFY3Q7L099 469 aa13.68□□□□□ -0.22
NPHP4-204ENST00000460696 FILIP1Q7Z7B0 1213 aa13.68□□□□□ -0.22
NPHP4-204ENST00000460696 HMG20BQ9P0W2 317 aa13.68□□□□□ -0.22
NPHP4-204ENST00000460696 ZPR1O75312 459 aa13.67□□□□□ -0.22
NPHP4-204ENST00000460696 A1BGP04217 495 aa13.67□□□□□ -0.22
NPHP4-204ENST00000460696 BAG6P46379 1132 aa13.67□□□□□ -0.22
NPHP4-204ENST00000460696 MCMDC2Q4G0Z9 681 aa13.67□□□□□ -0.22
NPHP4-204ENST00000460696 Q6ZUG5 572 aa13.67□□□□□ -0.22
NPHP4-204ENST00000460696 RASEFQ8IZ41 740 aa13.67□□□□□ -0.22
NPHP4-204ENST00000460696 METTL22Q9BUU2 404 aaPredicted RBP13.67□□□□□ -0.22
NPHP4-204ENST00000460696 VPS53Q5VIR6 699 aa13.67□□□□□ -0.22
NPHP4-204ENST00000460696 ARHGEF25Q86VW2 580 aa13.67□□□□□ -0.22
NPHP4-204ENST00000460696 UQCRHLA0A096LP55 91 aa13.67□□□□□ -0.22
NPHP4-204ENST00000460696 UQCRHP07919 91 aa13.67□□□□□ -0.22
NPHP4-204ENST00000460696 NAT10Q9H0A0 1025 aaKnown RBP13.67□□□□□ -0.22
NPHP4-204ENST00000460696 AOX1Q06278 1338 aa13.67□□□□□ -0.22
NPHP4-204ENST00000460696 CDK11BP21127 795 aaKnown RBP13.66□□□□□ -0.22
NPHP4-204ENST00000460696 MSL1Q68DK7 614 aa13.66□□□□□ -0.22
NPHP4-204ENST00000460696 CCDC24Q8N4L8 307 aa13.66□□□□□ -0.22
NPHP4-204ENST00000460696 CCDC82Q8N4S0 544 aa13.66□□□□□ -0.22
NPHP4-204ENST00000460696 ABCF2Q9UG63 623 aa13.66□□□□□ -0.22
NPHP4-204ENST00000460696 STAP2Q9UGK3 403 aa13.66□□□□□ -0.22
NPHP4-204ENST00000460696 PES1O00541 588 aaKnown RBP13.66□□□□□ -0.22
NPHP4-204ENST00000460696 SMC2O95347 1197 aa13.66□□□□□ -0.22
NPHP4-204ENST00000460696 BRD1O95696 1058 aa13.66□□□□□ -0.22
NPHP4-204ENST00000460696 PDIA4P13667 645 aaKnown RBP13.66□□□□□ -0.22
NPHP4-204ENST00000460696 HSP90AB3PQ58FF7 597 aa13.66□□□□□ -0.22
NPHP4-204ENST00000460696 NBPF14Q5TI25 921 aa13.66□□□□□ -0.22
NPHP4-204ENST00000460696 KRT27Q7Z3Y8 459 aa13.66□□□□□ -0.22
NPHP4-204ENST00000460696 NUP133Q8WUM0 1156 aa13.66□□□□□ -0.22
NPHP4-204ENST00000460696 AIDAQ96BJ3 306 aa13.66□□□□□ -0.22
NPHP4-204ENST00000460696 CD163L1Q9NR16 1453 aa13.66□□□□□ -0.22
NPHP4-204ENST00000460696 PSDA5PKW4 1024 aaPredicted RBP13.65□□□□□ -0.22
NPHP4-204ENST00000460696 HMGB1P09429 215 aaKnown RBP13.65□□□□□ -0.22
NPHP4-204ENST00000460696 SART3Q15020 963 aaKnown RBP13.65□□□□□ -0.22
NPHP4-204ENST00000460696 TPD52L1Q16890 204 aaPredicted RBP13.65□□□□□ -0.22
NPHP4-204ENST00000460696 HOMER1Q86YM7 354 aa13.65□□□□□ -0.22
NPHP4-204ENST00000460696 ZNF213O14771 459 aa13.65□□□□□ -0.22
NPHP4-204ENST00000460696 ZNF594Q96JF6 807 aaPredicted RBP13.65□□□□□ -0.22
NPHP4-204ENST00000460696 FSD2A1L4K1 749 aa13.65□□□□□ -0.22
NPHP4-204ENST00000460696 TDO2P48775 406 aa13.65□□□□□ -0.22
NPHP4-204ENST00000460696 ZSCAN25Q6NSZ9 544 aa13.65□□□□□ -0.22
NPHP4-204ENST00000460696 PAG1Q9NWQ8 432 aa13.65□□□□□ -0.22
NPHP4-204ENST00000460696 DACT1Q9NYF0 836 aa13.65□□□□□ -0.22
NPHP4-204ENST00000460696 SPATA31A3Q5VYP0 1347 aa13.65□□□□□ -0.23
NPHP4-204ENST00000460696 SLC27A2O14975 620 aa13.64□□□□□ -0.23
NPHP4-204ENST00000460696 C8orf76Q96K31 380 aa13.64□□□□□ -0.23
NPHP4-204ENST00000460696 NEURL1BA8MQ27 555 aa13.64□□□□□ -0.23
NPHP4-204ENST00000460696 POLR3DP05423 398 aaPredicted RBP13.64□□□□□ -0.23
NPHP4-204ENST00000460696 RFC4P35249 363 aa13.64□□□□□ -0.23
NPHP4-204ENST00000460696 IL15P40933 162 aaPredicted RBP13.64□□□□□ -0.23
NPHP4-204ENST00000460696 TNNI3KQ59H18 835 aa13.64□□□□□ -0.23
NPHP4-204ENST00000460696 LRP2BPQ9P2M1 347 aa13.64□□□□□ -0.23
NPHP4-204ENST00000460696 FPGT-TNNI3KV9GXZ4 949 aa13.64□□□□□ -0.23
NPHP4-204ENST00000460696 GOLGA8BA8MQT2 603 aa13.64□□□□□ -0.23
NPHP4-204ENST00000460696 TPM3P06753 285 aa13.64□□□□□ -0.23
NPHP4-204ENST00000460696 NEURL4Q96JN8 1562 aa13.64□□□□□ -0.23
NPHP4-204ENST00000460696 ZNF445P59923 1031 aa13.64□□□□□ -0.23
NPHP4-204ENST00000460696 HMGN5P82970 282 aaKnown RBP13.64□□□□□ -0.23
NPHP4-204ENST00000460696 GPT2Q8TD30 523 aa13.64□□□□□ -0.23
NPHP4-204ENST00000460696 CCNL1Q9UK58 526 aaPredicted RBP13.64□□□□□ -0.23
NPHP4-204ENST00000460696 CCDC144CPQ8IYA2 1237 aa13.63□□□□□ -0.23
NPHP4-204ENST00000460696 TTC12Q9H892 705 aaPredicted RBP13.63□□□□□ -0.23
NPHP4-204ENST00000460696 A0A0D9SFI3 127 aa13.63□□□□□ -0.23
NPHP4-204ENST00000460696 ANKRD18BA2A2Z9 1011 aa13.63□□□□□ -0.23
NPHP4-204ENST00000460696 ADCK5Q3MIX3 580 aa13.63□□□□□ -0.23
NPHP4-204ENST00000460696 FAM89AQ96GI7 184 aa13.63□□□□□ -0.23
NPHP4-204ENST00000460696 TLR7Q9NYK1 1049 aaKnown RBP13.63□□□□□ -0.23
NPHP4-204ENST00000460696 CCDC69A6NI79 296 aa13.63□□□□□ -0.23
NPHP4-204ENST00000460696 NACAP1Q9BZK3 213 aa13.63□□□□□ -0.23
NPHP4-204ENST00000460696 AXIN2Q9Y2T1 843 aa13.63□□□□□ -0.23
NPHP4-204ENST00000460696 PHKG2P15735 406 aa13.62□□□□□ -0.23
NPHP4-204ENST00000460696 APOBRQ0VD83 1088 aa13.62□□□□□ -0.23
NPHP4-204ENST00000460696 PREX1Q8TCU6 1659 aa13.62□□□□□ -0.23
NPHP4-204ENST00000460696 ARHGEF28Q8N1W1 1705 aaKnown RBP13.62□□□□□ -0.23
NPHP4-204ENST00000460696 ZNF165P49910 485 aa13.62□□□□□ -0.23
NPHP4-204ENST00000460696 COL3A1P02461 1466 aaPredicted RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 118.8 ms