RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 CC2D2BQ6DHV5 1058 aa23.79■■□□□ 1.4
USP39-209ENST00000458268 CELF1Q92879 486 aaKnown RBP23.79■■□□□ 1.4
USP39-209ENST00000458268 ATP6V0A2Q9Y487 856 aa23.79■■□□□ 1.4
USP39-209ENST00000458268 SPEF2Q9C093 1822 aa23.78■■□□□ 1.4
USP39-209ENST00000458268 PDE8AO60658 829 aa23.78■■□□□ 1.4
USP39-209ENST00000458268 IARSP41252 1262 aaKnown RBP23.78■■□□□ 1.4
USP39-209ENST00000458268 C1QTNF8P60827 252 aa23.78■■□□□ 1.4
USP39-209ENST00000458268 C16orf71Q8IYS4 520 aaPredicted RBP23.78■■□□□ 1.4
USP39-209ENST00000458268 COL4A1P02462 1669 aa23.77■■□□□ 1.4
USP39-209ENST00000458268 BBOX1O75936 387 aa23.77■■□□□ 1.4
USP39-209ENST00000458268 SF3B3Q15393 1217 aaKnown RBP23.77■■□□□ 1.4
USP39-209ENST00000458268 DPY19L2Q6NUT2 758 aa23.77■■□□□ 1.4
USP39-209ENST00000458268 SEC31BQ9NQW1 1179 aa23.77■■□□□ 1.4
USP39-209ENST00000458268 ZC3H4Q9UPT8 1303 aaKnown RBP23.77■■□□□ 1.4
USP39-209ENST00000458268 KIF3CO14782 793 aa23.76■■□□□ 1.39
USP39-209ENST00000458268 CCDC152Q4G0S7 254 aa23.76■■□□□ 1.39
USP39-209ENST00000458268 DPP8Q6V1X1 898 aaPredicted RBP23.76■■□□□ 1.39
USP39-209ENST00000458268 LINS1Q8NG48 757 aa23.76■■□□□ 1.39
USP39-209ENST00000458268 GLTPD2A6NH11 291 aa23.75■■□□□ 1.39
USP39-209ENST00000458268 GCKRQ14397 625 aa23.75■■□□□ 1.39
USP39-209ENST00000458268 LARGE2Q8N3Y3 721 aa23.75■■□□□ 1.39
USP39-209ENST00000458268 MRPL50Q8N5N7 158 aaKnown RBP23.75■■□□□ 1.39
USP39-209ENST00000458268 JDP2Q8WYK2 163 aa23.75■■□□□ 1.39
USP39-209ENST00000458268 SSH1Q8WYL5 1049 aa23.75■■□□□ 1.39
USP39-209ENST00000458268 PSMD1Q99460 953 aa23.75■■□□□ 1.39
USP39-209ENST00000458268 SMC4Q9NTJ3 1288 aa23.75■■□□□ 1.39
USP39-209ENST00000458268 CDHR2Q9BYE9 1310 aa23.75■■□□□ 1.39
USP39-209ENST00000458268 PPIP5K2O43314 1243 aa23.74■■□□□ 1.39
USP39-209ENST00000458268 SP8Q8IXZ3 490 aa23.74■■□□□ 1.39
USP39-209ENST00000458268 MPNDQ8N594 471 aa23.74■■□□□ 1.39
USP39-209ENST00000458268 DDNO94850 711 aaPredicted RBP23.73■■□□□ 1.39
USP39-209ENST00000458268 CTSWP56202 376 aa23.73■■□□□ 1.39
USP39-209ENST00000458268 AOC3Q16853 763 aa23.73■■□□□ 1.39
USP39-209ENST00000458268 SNED1Q8TER0 1413 aa23.73■■□□□ 1.39
USP39-209ENST00000458268 ZNF541Q9H0D2 1346 aa23.72■■□□□ 1.39
USP39-209ENST00000458268 LRRC37AA6NMS7 1700 aa23.71■■□□□ 1.39
USP39-209ENST00000458268 RPS8P62241 208 aaKnown RBP23.71■■□□□ 1.39
USP39-209ENST00000458268 GRIPAP1Q4V328 841 aa23.71■■□□□ 1.39
USP39-209ENST00000458268 BEND3Q5T5X7 828 aa23.71■■□□□ 1.39
USP39-209ENST00000458268 NSFL1CQ9UNZ2 370 aaKnown RBP23.71■■□□□ 1.39
USP39-209ENST00000458268 H7C1W4 665 aa23.7■■□□□ 1.38
USP39-209ENST00000458268 TMC4Q7Z404 712 aa23.7■■□□□ 1.38
USP39-209ENST00000458268 NIM1KQ8IY84 436 aa23.7■■□□□ 1.38
USP39-209ENST00000458268 SUPT20HQ8NEM7 779 aa23.7■■□□□ 1.38
USP39-209ENST00000458268 CHMP3Q9Y3E7 222 aa23.7■■□□□ 1.38
USP39-209ENST00000458268 GJA3Q9Y6H8 435 aa23.7■■□□□ 1.38
USP39-209ENST00000458268 COL4A5P29400 1685 aa23.7■■□□□ 1.38
USP39-209ENST00000458268 C6orf229H3BNL8 230 aa23.69■■□□□ 1.38
USP39-209ENST00000458268 ANKRD18AQ8IVF6 992 aa23.69■■□□□ 1.38
USP39-209ENST00000458268 TRMT2AQ8IZ69 625 aaKnown RBP23.69■■□□□ 1.38
USP39-209ENST00000458268 SRCIN1Q9C0H9 1055 aa23.69■■□□□ 1.38
USP39-209ENST00000458268 GREM2Q9H772 168 aa23.69■■□□□ 1.38
USP39-209ENST00000458268 C9orf78Q9NZ63 289 aaPredicted RBP23.69■■□□□ 1.38
USP39-209ENST00000458268 EIF6P56537 245 aaKnown RBP23.68■■□□□ 1.38
USP39-209ENST00000458268 GPSM2P81274 684 aa23.68■■□□□ 1.38
USP39-209ENST00000458268 RIMBP2O15034 1052 aa23.67■■□□□ 1.38
USP39-209ENST00000458268 VEGFAP15692 232 aaPredicted RBP23.67■■□□□ 1.38
USP39-209ENST00000458268 TTLL11Q8NHH1 800 aa23.67■■□□□ 1.38
USP39-209ENST00000458268 GPR101Q96P66 508 aaPredicted RBP23.67■■□□□ 1.38
USP39-209ENST00000458268 CDC5LQ99459 802 aaKnown RBP23.67■■□□□ 1.38
USP39-209ENST00000458268 ANKIB1Q9P2G1 1089 aa23.67■■□□□ 1.38
USP39-209ENST00000458268 WDR90Q96KV7 1748 aa23.67■■□□□ 1.38
USP39-209ENST00000458268 TOMM70O94826 608 aa23.66■■□□□ 1.38
USP39-209ENST00000458268 ALDH1L2Q3SY69 923 aa23.66■■□□□ 1.38
USP39-209ENST00000458268 DUOX1Q9NRD9 1551 aa23.65■■□□□ 1.38
USP39-209ENST00000458268 PTPRCP08575 1304 aa23.65■■□□□ 1.38
USP39-209ENST00000458268 GRM8O00222 908 aa23.65■■□□□ 1.38
USP39-209ENST00000458268 FAM161AQ3B820 660 aa23.65■■□□□ 1.38
USP39-209ENST00000458268 CASP7P55210 303 aa23.64■■□□□ 1.37
USP39-209ENST00000458268 FZD9O00144 591 aa23.63■■□□□ 1.37
USP39-209ENST00000458268 ALDH1L1O75891 902 aa23.63■■□□□ 1.37
USP39-209ENST00000458268 UFL1O94874 794 aa23.63■■□□□ 1.37
USP39-209ENST00000458268 ITGA6P23229 1130 aa23.63■■□□□ 1.37
USP39-209ENST00000458268 CT47B1P0C2W7 299 aaPredicted RBP23.62■■□□□ 1.37
USP39-209ENST00000458268 IGHMBP2P38935 993 aaKnown RBP23.62■■□□□ 1.37
USP39-209ENST00000458268 WASHC4Q2M389 1173 aa23.62■■□□□ 1.37
USP39-209ENST00000458268 RTFDC1Q9BY42 306 aaPredicted RBP23.62■■□□□ 1.37
USP39-209ENST00000458268 G3V3G9 751 aa23.61■■□□□ 1.37
USP39-209ENST00000458268 KIAA2012Q0VF49 1180 aa23.61■■□□□ 1.37
USP39-209ENST00000458268 DCAF8Q5TAQ9 597 aa23.61■■□□□ 1.37
USP39-209ENST00000458268 PLA2G12BQ9BX93 195 aa23.61■■□□□ 1.37
USP39-209ENST00000458268 POLLQ9UGP5 575 aa23.61■■□□□ 1.37
USP39-209ENST00000458268 NOB1Q9ULX3 412 aaKnown RBP23.61■■□□□ 1.37
USP39-209ENST00000458268 POTECB2RU33 542 aa23.6■■□□□ 1.37
USP39-209ENST00000458268 DOK7Q18PE1 504 aa23.6■■□□□ 1.37
USP39-209ENST00000458268 EAPPQ56P03 285 aaPredicted RBP23.6■■□□□ 1.37
USP39-209ENST00000458268 RBM46Q8TBY0 533 aaKnown RBP23.6■■□□□ 1.37
USP39-209ENST00000458268 EYA3Q99504 573 aa23.6■■□□□ 1.37
USP39-209ENST00000458268 MPHOSPH8Q99549 860 aa23.6■■□□□ 1.37
USP39-209ENST00000458268 DBNDD1Q9H9R9 158 aa23.6■■□□□ 1.37
USP39-209ENST00000458268 GGA1Q9UJY5 639 aa23.6■■□□□ 1.37
USP39-209ENST00000458268 LTBP1Q14766 1721 aa23.59■■□□□ 1.37
USP39-209ENST00000458268 SCN4AP35499 1836 aa23.59■■□□□ 1.37
USP39-209ENST00000458268 ANKRD18BA2A2Z9 1011 aa23.59■■□□□ 1.37
USP39-209ENST00000458268 RAD17O75943 681 aa23.59■■□□□ 1.37
USP39-209ENST00000458268 TAF7LQ5H9L4 462 aa23.59■■□□□ 1.37
USP39-209ENST00000458268 EPHA10Q5JZY3 1008 aa23.59■■□□□ 1.37
USP39-209ENST00000458268 LMBR1LQ6UX01 489 aa23.59■■□□□ 1.37
USP39-209ENST00000458268 GPC2Q8N158 579 aa23.59■■□□□ 1.37
USP39-209ENST00000458268 TBC1D16Q8TBP0 767 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms