RNA–Protein interactions for RNA: ENST00000456948.5

CBX3-204, Transcript of chromobox 3, humanhuman

TSL 5

Gene CBX3, Length 1,068 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-204ENST00000456948 CWF19L2Q2TBE0 894 aaKnown RBP29.46■■■□□ 2.31
CBX3-204ENST00000456948 OLFM4Q6UX06 510 aa29.46■■■□□ 2.31
CBX3-204ENST00000456948 C16orf71Q8IYS4 520 aaPredicted RBP29.46■■■□□ 2.31
CBX3-204ENST00000456948 SUPT20HQ8NEM7 779 aa29.46■■■□□ 2.31
CBX3-204ENST00000456948 JDP2Q8WYK2 163 aa29.45■■■□□ 2.31
CBX3-204ENST00000456948 RRAGCQ9HB90 399 aa29.45■■■□□ 2.31
CBX3-204ENST00000456948 ZNF277Q9NRM2 450 aaPredicted RBP29.45■■■□□ 2.31
CBX3-204ENST00000456948 IARSP41252 1262 aaKnown RBP29.44■■■□□ 2.3
CBX3-204ENST00000456948 GCKRQ14397 625 aa29.44■■■□□ 2.3
CBX3-204ENST00000456948 TRMT2AQ8IZ69 625 aaKnown RBP29.44■■■□□ 2.3
CBX3-204ENST00000456948 LAMB2P55268 1798 aa29.44■■■□□ 2.3
CBX3-204ENST00000456948 DICER1Q9UPY3 1922 aaKnown RBP29.43■■■□□ 2.3
CBX3-204ENST00000456948 DDX60Q8IY21 1712 aaKnown RBP29.43■■■□□ 2.3
CBX3-204ENST00000456948 TOMM70O94826 608 aa29.43■■■□□ 2.3
CBX3-204ENST00000456948 VPS33BQ9H267 617 aa29.43■■■□□ 2.3
CBX3-204ENST00000456948 ALDH1L2Q3SY69 923 aa29.42■■■□□ 2.3
CBX3-204ENST00000456948 DPP8Q6V1X1 898 aaPredicted RBP29.42■■■□□ 2.3
CBX3-204ENST00000456948 MPNDQ8N594 471 aa29.42■■■□□ 2.3
CBX3-204ENST00000456948 JARID2Q92833 1246 aaPredicted RBP29.42■■■□□ 2.3
CBX3-204ENST00000456948 H7C1W4 665 aa29.41■■■□□ 2.3
CBX3-204ENST00000456948 RPS8P62241 208 aaKnown RBP29.41■■■□□ 2.3
CBX3-204ENST00000456948 HNRNPUQ00839 825 aaKnown RBP eCLIP29.41■■■□□ 2.3
CBX3-204ENST00000456948 TIAM2Q8IVF5 1701 aa29.4■■■□□ 2.3
CBX3-204ENST00000456948 UBE3BQ7Z3V4 1068 aa29.4■■■□□ 2.3
CBX3-204ENST00000456948 PTPRCP08575 1304 aa29.4■■■□□ 2.3
CBX3-204ENST00000456948 F6X3S4 739 aa29.39■■■□□ 2.3
CBX3-204ENST00000456948 HSPA6P17066 643 aa29.39■■■□□ 2.3
CBX3-204ENST00000456948 SLC4A10Q6U841 1118 aa29.39■■■□□ 2.3
CBX3-204ENST00000456948 MRPL50Q8N5N7 158 aaKnown RBP29.39■■■□□ 2.3
CBX3-204ENST00000456948 VEGFAP15692 232 aaPredicted RBP29.38■■■□□ 2.29
CBX3-204ENST00000456948 CTSWP56202 376 aa29.38■■■□□ 2.29
CBX3-204ENST00000456948 LARGE2Q8N3Y3 721 aa29.38■■■□□ 2.29
CBX3-204ENST00000456948 CDC5LQ99459 802 aaKnown RBP29.38■■■□□ 2.29
CBX3-204ENST00000456948 BEND3Q5T5X7 828 aa29.37■■■□□ 2.29
CBX3-204ENST00000456948 SSH1Q8WYL5 1049 aa29.37■■■□□ 2.29
CBX3-204ENST00000456948 CELF1Q92879 486 aaKnown RBP29.37■■■□□ 2.29
CBX3-204ENST00000456948 ALDH1L1O75891 902 aa29.36■■■□□ 2.29
CBX3-204ENST00000456948 SRCIN1Q9C0H9 1055 aa29.36■■■□□ 2.29
CBX3-204ENST00000456948 SMC4Q9NTJ3 1288 aa29.36■■■□□ 2.29
CBX3-204ENST00000456948 EIF6P56537 245 aaKnown RBP29.35■■■□□ 2.29
CBX3-204ENST00000456948 ANKRD18AQ8IVF6 992 aa29.35■■■□□ 2.29
CBX3-204ENST00000456948 RTFDC1Q9BY42 306 aaPredicted RBP29.35■■■□□ 2.29
CBX3-204ENST00000456948 C9orf78Q9NZ63 289 aaPredicted RBP29.35■■■□□ 2.29
CBX3-204ENST00000456948 PPIP5K2O43314 1243 aa29.34■■■□□ 2.29
CBX3-204ENST00000456948 NIM1KQ8IY84 436 aa29.34■■■□□ 2.29
CBX3-204ENST00000456948 TTLL11Q8NHH1 800 aa29.34■■■□□ 2.29
CBX3-204ENST00000456948 CCDC85AQ96PX6 553 aaPredicted RBP29.34■■■□□ 2.29
CBX3-204ENST00000456948 PLA2G12BQ9BX93 195 aa29.34■■■□□ 2.29
CBX3-204ENST00000456948 NSFL1CQ9UNZ2 370 aaKnown RBP29.34■■■□□ 2.29
CBX3-204ENST00000456948 RBM46Q8TBY0 533 aaKnown RBP29.33■■■□□ 2.29
CBX3-204ENST00000456948 SEC31BQ9NQW1 1179 aa29.33■■■□□ 2.29
CBX3-204ENST00000456948 SNED1Q8TER0 1413 aa29.33■■■□□ 2.29
CBX3-204ENST00000456948 FZD9O00144 591 aa29.31■■■□□ 2.28
CBX3-204ENST00000456948 GRM8O00222 908 aa29.31■■■□□ 2.28
CBX3-204ENST00000456948 TAF1P21675 1872 aa29.31■■■□□ 2.28
CBX3-204ENST00000456948 IQCA1LA6NCM1 817 aa29.3■■■□□ 2.28
CBX3-204ENST00000456948 EYA3Q99504 573 aa29.3■■■□□ 2.28
CBX3-204ENST00000456948 BCL2L13Q9BXK5 485 aa29.3■■■□□ 2.28
CBX3-204ENST00000456948 ANKIB1Q9P2G1 1089 aa29.3■■■□□ 2.28
CBX3-204ENST00000456948 MYH3P11055 1940 aa29.3■■■□□ 2.28
CBX3-204ENST00000456948 RTL9Q8NET4 1388 aa29.29■■■□□ 2.28
CBX3-204ENST00000456948 C6orf229H3BNL8 230 aa29.29■■■□□ 2.28
CBX3-204ENST00000456948 DDNO94850 711 aaPredicted RBP29.29■■■□□ 2.28
CBX3-204ENST00000456948 IGHMBP2P38935 993 aaKnown RBP29.28■■■□□ 2.28
CBX3-204ENST00000456948 CASP7P55210 303 aa29.28■■■□□ 2.28
CBX3-204ENST00000456948 AOC3Q16853 763 aa29.28■■■□□ 2.28
CBX3-204ENST00000456948 GREM2Q9H772 168 aa29.28■■■□□ 2.28
CBX3-204ENST00000456948 KIAA2012Q0VF49 1180 aa29.27■■■□□ 2.28
CBX3-204ENST00000456948 WASHC4Q2M389 1173 aa29.27■■■□□ 2.28
CBX3-204ENST00000456948 GPC2Q8N158 579 aa29.27■■■□□ 2.28
CBX3-204ENST00000456948 BSDC1Q9NW68 430 aaPredicted RBP29.26■■■□□ 2.27
CBX3-204ENST00000456948 ZNRF3Q9ULT6 936 aa29.26■■■□□ 2.27
CBX3-204ENST00000456948 CEP350Q5VT06 3117 aa29.26■■■□□ 2.27
CBX3-204ENST00000456948 CSF1RP07333 972 aa29.25■■■□□ 2.27
CBX3-204ENST00000456948 BRPF1P55201 1214 aaPredicted RBP29.25■■■□□ 2.27
CBX3-204ENST00000456948 GPSM2P81274 684 aa29.25■■■□□ 2.27
CBX3-204ENST00000456948 FSTL1Q12841 308 aa29.25■■■□□ 2.27
CBX3-204ENST00000456948 MPHOSPH8Q99549 860 aa29.25■■■□□ 2.27
CBX3-204ENST00000456948 API5Q9BZZ5 524 aaKnown RBP29.25■■■□□ 2.27
CBX3-204ENST00000456948 PODXL2Q9NZ53 605 aa29.25■■■□□ 2.27
CBX3-204ENST00000456948 ANKRD18BA2A2Z9 1011 aa29.24■■■□□ 2.27
CBX3-204ENST00000456948 ITGA6P23229 1130 aa29.24■■■□□ 2.27
CBX3-204ENST00000456948 APLP1P51693 650 aa29.24■■■□□ 2.27
CBX3-204ENST00000456948 L3MBTL3Q96JM7 780 aaPredicted RBP29.24■■■□□ 2.27
CBX3-204ENST00000456948 GGA1Q9UJY5 639 aa29.24■■■□□ 2.27
CBX3-204ENST00000456948 CHMP3Q9Y3E7 222 aa29.24■■■□□ 2.27
CBX3-204ENST00000456948 WDR90Q96KV7 1748 aa29.23■■■□□ 2.27
CBX3-204ENST00000456948 G3V3G9 751 aa29.23■■■□□ 2.27
CBX3-204ENST00000456948 IFIT5Q13325 482 aaKnown RBP29.23■■■□□ 2.27
CBX3-204ENST00000456948 DCAF8Q5TAQ9 597 aa29.23■■■□□ 2.27
CBX3-204ENST00000456948 SLC51AQ86UW1 340 aa29.23■■■□□ 2.27
CBX3-204ENST00000456948 SMC1BQ8NDV3 1235 aa29.23■■■□□ 2.27
CBX3-204ENST00000456948 ZC3H12CQ9C0D7 883 aaKnown RBP29.23■■■□□ 2.27
CBX3-204ENST00000456948 GJA3Q9Y6H8 435 aa29.23■■■□□ 2.27
CBX3-204ENST00000456948 XDHP47989 1333 aa29.22■■■□□ 2.27
CBX3-204ENST00000456948 KIF16BQ96L93 1317 aa29.22■■■□□ 2.27
CBX3-204ENST00000456948 ZNF541Q9H0D2 1346 aa29.22■■■□□ 2.27
CBX3-204ENST00000456948 POTECB2RU33 542 aa29.22■■■□□ 2.27
CBX3-204ENST00000456948 IPO8O15397 1037 aaKnown RBP29.22■■■□□ 2.27
CBX3-204ENST00000456948 RARSP54136 660 aaKnown RBP29.22■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms