RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 HSP90B1P14625 803 aaKnown RBP27.23■■□□□ 1.95
HMGB3-205ENST00000455596 EXOSC9Q06265 439 aaKnown RBP27.23■■□□□ 1.95
HMGB3-205ENST00000455596 PI4KAP1Q8N8J0 262 aa27.23■■□□□ 1.95
HMGB3-205ENST00000455596 COL4A5P29400 1685 aa27.23■■□□□ 1.95
HMGB3-205ENST00000455596 PCCAP05165 728 aaPredicted RBP27.22■■□□□ 1.95
HMGB3-205ENST00000455596 APLP1P51693 650 aa27.22■■□□□ 1.95
HMGB3-205ENST00000455596 TMC4Q7Z404 712 aa27.22■■□□□ 1.95
HMGB3-205ENST00000455596 MYH16Q9H6N6 1097 aa27.22■■□□□ 1.95
HMGB3-205ENST00000455596 VAMP4O75379 141 aa27.21■■□□□ 1.95
HMGB3-205ENST00000455596 NEXNQ0ZGT2 675 aa27.21■■□□□ 1.95
HMGB3-205ENST00000455596 G2E3Q7L622 706 aa27.21■■□□□ 1.95
HMGB3-205ENST00000455596 LARGE2Q8N3Y3 721 aa27.21■■□□□ 1.95
HMGB3-205ENST00000455596 SUPT20HQ8NEM7 779 aa27.21■■□□□ 1.95
HMGB3-205ENST00000455596 L3MBTL3Q96JM7 780 aaPredicted RBP27.21■■□□□ 1.95
HMGB3-205ENST00000455596 SPINK5Q9NQ38 1064 aaPredicted RBP27.21■■□□□ 1.95
HMGB3-205ENST00000455596 IQCA1LA6NCM1 817 aa27.2■■□□□ 1.94
HMGB3-205ENST00000455596 VPS33BQ9H267 617 aa27.2■■□□□ 1.94
HMGB3-205ENST00000455596 DPP8Q6V1X1 898 aaPredicted RBP27.19■■□□□ 1.94
HMGB3-205ENST00000455596 MPNDQ8N594 471 aa27.19■■□□□ 1.94
HMGB3-205ENST00000455596 RTFDC1Q9BY42 306 aaPredicted RBP27.19■■□□□ 1.94
HMGB3-205ENST00000455596 COL4A1P02462 1669 aa27.18■■□□□ 1.94
HMGB3-205ENST00000455596 PPIP5K2O43314 1243 aa27.18■■□□□ 1.94
HMGB3-205ENST00000455596 EIF6P56537 245 aaKnown RBP27.18■■□□□ 1.94
HMGB3-205ENST00000455596 FLIIQ13045 1269 aa27.18■■□□□ 1.94
HMGB3-205ENST00000455596 PDE8AO60658 829 aa27.17■■□□□ 1.94
HMGB3-205ENST00000455596 IGKV5-2P06315 115 aa27.17■■□□□ 1.94
HMGB3-205ENST00000455596 AOC3Q16853 763 aa27.17■■□□□ 1.94
HMGB3-205ENST00000455596 NIM1KQ8IY84 436 aa27.17■■□□□ 1.94
HMGB3-205ENST00000455596 GPC2Q8N158 579 aa27.17■■□□□ 1.94
HMGB3-205ENST00000455596 CELF1Q92879 486 aaKnown RBP27.17■■□□□ 1.94
HMGB3-205ENST00000455596 JARID2Q92833 1246 aaPredicted RBP27.16■■□□□ 1.94
HMGB3-205ENST00000455596 ZNF521Q96K83 1311 aa27.16■■□□□ 1.94
HMGB3-205ENST00000455596 CDHR2Q9BYE9 1310 aa27.16■■□□□ 1.94
HMGB3-205ENST00000455596 DUOX1Q9NRD9 1551 aa27.15■■□□□ 1.94
HMGB3-205ENST00000455596 FKBP5Q13451 457 aaPredicted RBP27.15■■□□□ 1.94
HMGB3-205ENST00000455596 SPEF2Q9C093 1822 aa27.14■■□□□ 1.94
HMGB3-205ENST00000455596 CCDC152Q4G0S7 254 aa27.14■■□□□ 1.94
HMGB3-205ENST00000455596 LTBP1Q14766 1721 aa27.13■■□□□ 1.93
HMGB3-205ENST00000455596 NEURL1BA8MQ27 555 aa27.13■■□□□ 1.93
HMGB3-205ENST00000455596 CWF19L2Q2TBE0 894 aaKnown RBP27.13■■□□□ 1.93
HMGB3-205ENST00000455596 TAF1DQ9H5J8 278 aaPredicted RBP27.13■■□□□ 1.93
HMGB3-205ENST00000455596 HACL1Q9UJ83 578 aa27.13■■□□□ 1.93
HMGB3-205ENST00000455596 RPS8P62241 208 aaKnown RBP27.12■■□□□ 1.93
HMGB3-205ENST00000455596 GJA3Q9Y6H8 435 aa27.12■■□□□ 1.93
HMGB3-205ENST00000455596 KIAA2012Q0VF49 1180 aa27.11■■□□□ 1.93
HMGB3-205ENST00000455596 DNAAF4Q8WXU2 420 aa27.11■■□□□ 1.93
HMGB3-205ENST00000455596 SEC31BQ9NQW1 1179 aa27.11■■□□□ 1.93
HMGB3-205ENST00000455596 ADAMTSL1Q8N6G6 1762 aa27.11■■□□□ 1.93
HMGB3-205ENST00000455596 CHADLQ6NUI6 762 aa27.1■■□□□ 1.93
HMGB3-205ENST00000455596 NSFL1CQ9UNZ2 370 aaKnown RBP27.1■■□□□ 1.93
HMGB3-205ENST00000455596 CCER2I3L3R5 266 aa27.09■■□□□ 1.93
HMGB3-205ENST00000455596 POTEIP0CG38 1075 aa27.09■■□□□ 1.93
HMGB3-205ENST00000455596 POTEJP0CG39 1038 aa27.09■■□□□ 1.93
HMGB3-205ENST00000455596 EPHX2P34913 555 aa27.09■■□□□ 1.93
HMGB3-205ENST00000455596 ZNRF3Q9ULT6 936 aa27.09■■□□□ 1.93
HMGB3-205ENST00000455596 CTSWP56202 376 aa27.08■■□□□ 1.93
HMGB3-205ENST00000455596 LDHDQ86WU2 507 aa27.08■■□□□ 1.93
HMGB3-205ENST00000455596 CCDC85AQ96PX6 553 aaPredicted RBP27.08■■□□□ 1.93
HMGB3-205ENST00000455596 H7C1W4 665 aa27.07■■□□□ 1.92
HMGB3-205ENST00000455596 LMOD1P29536 600 aaPredicted RBP27.07■■□□□ 1.92
HMGB3-205ENST00000455596 GPSM2P81274 684 aa27.07■■□□□ 1.92
HMGB3-205ENST00000455596 EAPPQ56P03 285 aaPredicted RBP27.07■■□□□ 1.92
HMGB3-205ENST00000455596 LINS1Q8NG48 757 aa27.07■■□□□ 1.92
HMGB3-205ENST00000455596 GCKRQ14397 625 aa27.06■■□□□ 1.92
HMGB3-205ENST00000455596 UBE3BQ7Z3V4 1068 aa27.06■■□□□ 1.92
HMGB3-205ENST00000455596 PNMA8AQ86V59 439 aaPredicted RBP27.06■■□□□ 1.92
HMGB3-205ENST00000455596 C6orf229H3BNL8 230 aa27.05■■□□□ 1.92
HMGB3-205ENST00000455596 HTRA3P83110 453 aa27.05■■□□□ 1.92
HMGB3-205ENST00000455596 WASHC4Q2M389 1173 aa27.05■■□□□ 1.92
HMGB3-205ENST00000455596 ANKRD18AQ8IVF6 992 aa27.05■■□□□ 1.92
HMGB3-205ENST00000455596 E9PSI1 815 aa27.04■■□□□ 1.92
HMGB3-205ENST00000455596 CXCL9Q07325 125 aa27.04■■□□□ 1.92
HMGB3-205ENST00000455596 DNAJC5GQ8N7S2 189 aa27.04■■□□□ 1.92
HMGB3-205ENST00000455596 TTLL11Q8NHH1 800 aa27.04■■□□□ 1.92
HMGB3-205ENST00000455596 EYA3Q99504 573 aa27.04■■□□□ 1.92
HMGB3-205ENST00000455596 SCNN1DP51172 638 aa27.03■■□□□ 1.92
HMGB3-205ENST00000455596 CDC5LQ99459 802 aaKnown RBP27.03■■□□□ 1.92
HMGB3-205ENST00000455596 POLLQ9UGP5 575 aa27.03■■□□□ 1.92
HMGB3-205ENST00000455596 CLEC11AQ9Y240 323 aa27.03■■□□□ 1.92
HMGB3-205ENST00000455596 F6X3S4 739 aa27.02■■□□□ 1.92
HMGB3-205ENST00000455596 CIAPIN1Q6FI81 312 aa27.02■■□□□ 1.92
HMGB3-205ENST00000455596 PODXL2Q9NZ53 605 aa27.02■■□□□ 1.92
HMGB3-205ENST00000455596 RTL9Q8NET4 1388 aa27.01■■□□□ 1.91
HMGB3-205ENST00000455596 TBC1D16Q8TBP0 767 aa27.01■■□□□ 1.91
HMGB3-205ENST00000455596 PLA2G12BQ9BX93 195 aa27.01■■□□□ 1.91
HMGB3-205ENST00000455596 ANKIB1Q9P2G1 1089 aa27.01■■□□□ 1.91
HMGB3-205ENST00000455596 RIMBP2O15034 1052 aa27■■□□□ 1.91
HMGB3-205ENST00000455596 TNIP1Q15025 636 aa27■■□□□ 1.91
HMGB3-205ENST00000455596 GREM2Q9H772 168 aa27■■□□□ 1.91
HMGB3-205ENST00000455596 YDJCA8MPS7 323 aa26.99■■□□□ 1.91
HMGB3-205ENST00000455596 RAD17O75943 681 aa26.99■■□□□ 1.91
HMGB3-205ENST00000455596 EPS15P42566 896 aa26.99■■□□□ 1.91
HMGB3-205ENST00000455596 CASP7P55210 303 aa26.99■■□□□ 1.91
HMGB3-205ENST00000455596 SLFN5Q08AF3 891 aa26.99■■□□□ 1.91
HMGB3-205ENST00000455596 BEND3Q5T5X7 828 aa26.99■■□□□ 1.91
HMGB3-205ENST00000455596 GGA1Q9UJY5 639 aa26.99■■□□□ 1.91
HMGB3-205ENST00000455596 CEP350Q5VT06 3117 aa26.99■■□□□ 1.91
HMGB3-205ENST00000455596 UFL1O94874 794 aa26.98■■□□□ 1.91
HMGB3-205ENST00000455596 KLRG1Q96E93 195 aa26.98■■□□□ 1.91
HMGB3-205ENST00000455596 DBNDD1Q9H9R9 158 aa26.98■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms