RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 GATA4P43694 442 aa7.56□□□□□ -1.2
USP40-209ENST00000452724 RAC1P63000 192 aa7.56□□□□□ -1.2
USP40-209ENST00000452724 PSAPL1Q6NUJ1 521 aa7.56□□□□□ -1.2
USP40-209ENST00000452724 KRT25Q7Z3Z0 450 aa7.56□□□□□ -1.2
USP40-209ENST00000452724 NUDT8Q8WV74 236 aa7.56□□□□□ -1.2
USP40-209ENST00000452724 COL26A1Q96A83 441 aa7.56□□□□□ -1.2
USP40-209ENST00000452724 USTQ9Y2C2 406 aa7.56□□□□□ -1.2
USP40-209ENST00000452724 TMEM88BA6NKF7 163 aa7.55□□□□□ -1.2
USP40-209ENST00000452724 BRD2P25440 801 aaKnown RBP7.55□□□□□ -1.2
USP40-209ENST00000452724 FAM69CQ0P6D2 419 aa7.55□□□□□ -1.2
USP40-209ENST00000452724 COX20Q5RI15 118 aa7.55□□□□□ -1.2
USP40-209ENST00000452724 C16orf46Q6P387 395 aa7.55□□□□□ -1.2
USP40-209ENST00000452724 DHX32Q7L7V1 743 aaKnown RBP7.55□□□□□ -1.2
USP40-209ENST00000452724 FAM35AQ86V20 835 aa7.55□□□□□ -1.2
USP40-209ENST00000452724 TREML1Q86YW5 311 aa7.55□□□□□ -1.2
USP40-209ENST00000452724 LRFN2Q9ULH4 789 aa7.55□□□□□ -1.2
USP40-209ENST00000452724 RTCBQ9Y3I0 505 aaKnown RBP7.55□□□□□ -1.2
USP40-209ENST00000452724 PDE4CQ08493 712 aa7.54□□□□□ -1.2
USP40-209ENST00000452724 COL9A3Q14050 684 aaPredicted RBP7.54□□□□□ -1.2
USP40-209ENST00000452724 OCLNQ16625 522 aa7.54□□□□□ -1.2
USP40-209ENST00000452724 RGL4Q8IZJ4 473 aa7.54□□□□□ -1.2
USP40-209ENST00000452724 CMTR1Q8N1G2 835 aaKnown RBP7.54□□□□□ -1.2
USP40-209ENST00000452724 FAM13BQ9NYF5 915 aa7.54□□□□□ -1.2
USP40-209ENST00000452724 FRRS1LQ9P0K9 344 aa7.54□□□□□ -1.2
USP40-209ENST00000452724 FAM229AH3BQW9 127 aa7.53□□□□□ -1.2
USP40-209ENST00000452724 XYLBO75191 536 aa7.53□□□□□ -1.2
USP40-209ENST00000452724 SASH3O75995 380 aa7.53□□□□□ -1.2
USP40-209ENST00000452724 FURINP09958 794 aa7.53□□□□□ -1.2
USP40-209ENST00000452724 CPB1P15086 417 aa7.53□□□□□ -1.2
USP40-209ENST00000452724 TARSP26639 723 aaKnown RBP7.53□□□□□ -1.2
USP40-209ENST00000452724 GPLD1P80108 840 aa7.53□□□□□ -1.2
USP40-209ENST00000452724 TRPM4Q8TD43 1214 aa7.53□□□□□ -1.2
USP40-209ENST00000452724 CXXC1Q9P0U4 656 aaPredicted RBP7.53□□□□□ -1.2
USP40-209ENST00000452724 CARNS1A5YM72 827 aa7.52□□□□□ -1.21
USP40-209ENST00000452724 C9orf172C9J069 976 aa7.52□□□□□ -1.21
USP40-209ENST00000452724 OPLAHO14841 1288 aa7.52□□□□□ -1.21
USP40-209ENST00000452724 EGFRP00533 1210 aa7.52□□□□□ -1.21
USP40-209ENST00000452724 ELNP15502 786 aa7.52□□□□□ -1.21
USP40-209ENST00000452724 GRNP28799 593 aaKnown RBP7.52□□□□□ -1.21
USP40-209ENST00000452724 ELMSAN1Q6PJG2 1045 aa7.52□□□□□ -1.21
USP40-209ENST00000452724 HOMEZQ8IX15 550 aa7.52□□□□□ -1.21
USP40-209ENST00000452724 CLP1Q92989 425 aaKnown RBP7.52□□□□□ -1.21
USP40-209ENST00000452724 MKNK1Q9BUB5 465 aa7.52□□□□□ -1.21
USP40-209ENST00000452724 ZFATQ9P243 1243 aa7.52□□□□□ -1.21
USP40-209ENST00000452724 NAGPAQ9UK23 515 aa7.52□□□□□ -1.21
USP40-209ENST00000452724 LOC100996750A0A140TA64 210 aa7.51□□□□□ -1.21
USP40-209ENST00000452724 PSAPP07602 524 aa7.51□□□□□ -1.21
USP40-209ENST00000452724 AFF1P51825 1210 aaKnown RBP7.51□□□□□ -1.21
USP40-209ENST00000452724 NRLP54845 237 aa7.51□□□□□ -1.21
USP40-209ENST00000452724 KRTAP4-6Q9BYQ5 205 aa7.51□□□□□ -1.21
USP40-209ENST00000452724 TLR7Q9NYK1 1049 aaKnown RBP7.51□□□□□ -1.21
USP40-209ENST00000452724 A0A0A0MRY4 1105 aa7.5□□□□□ -1.21
USP40-209ENST00000452724 NRG1Q02297 640 aaPredicted RBP7.5□□□□□ -1.21
USP40-209ENST00000452724 PLAURQ03405 335 aa7.5□□□□□ -1.21
USP40-209ENST00000452724 DOC2BQ14184 412 aa7.5□□□□□ -1.21
USP40-209ENST00000452724 PIK3R5Q8WYR1 880 aa7.5□□□□□ -1.21
USP40-209ENST00000452724 RBSNQ9H1K0 784 aa7.5□□□□□ -1.21
USP40-209ENST00000452724 SLAIN2Q9P270 581 aa7.5□□□□□ -1.21
USP40-209ENST00000452724 USP20Q9Y2K6 914 aa7.5□□□□□ -1.21
USP40-209ENST00000452724 EIF2AK2P19525 551 aaKnown RBP7.49□□□□□ -1.21
USP40-209ENST00000452724 MLLT1Q03111 559 aaPredicted RBP7.49□□□□□ -1.21
USP40-209ENST00000452724 GRIK4Q16099 956 aa7.49□□□□□ -1.21
USP40-209ENST00000452724 ETFBKMTQ8IXQ9 262 aa7.49□□□□□ -1.21
USP40-209ENST00000452724 DTWD1Q8N5C7 304 aa7.49□□□□□ -1.21
USP40-209ENST00000452724 ABTB2Q8N961 1025 aa7.49□□□□□ -1.21
USP40-209ENST00000452724 TTC9Q92623 222 aa7.49□□□□□ -1.21
USP40-209ENST00000452724 LPIN3Q9BQK8 851 aa7.49□□□□□ -1.21
USP40-209ENST00000452724 SAP130Q9H0E3 1048 aa7.49□□□□□ -1.21
USP40-209ENST00000452724 FNDC3AQ9Y2H6 1198 aaKnown RBP7.49□□□□□ -1.21
USP40-209ENST00000452724 GHRHP01286 108 aa7.48□□□□□ -1.21
USP40-209ENST00000452724 ATP2B4P23634 1241 aa7.48□□□□□ -1.21
USP40-209ENST00000452724 NAA30Q147X3 362 aaPredicted RBP7.48□□□□□ -1.21
USP40-209ENST00000452724 PERM1Q5SV97 790 aa7.48□□□□□ -1.21
USP40-209ENST00000452724 MSL1Q68DK7 614 aa7.48□□□□□ -1.21
USP40-209ENST00000452724 NLRP13Q86W25 1043 aa7.48□□□□□ -1.21
USP40-209ENST00000452724 WFDC8Q8IUA0 241 aa7.48□□□□□ -1.21
USP40-209ENST00000452724 DMRTC2Q8IXT2 367 aaPredicted RBP7.48□□□□□ -1.21
USP40-209ENST00000452724 ZBTB42B2RXF5 422 aa7.47□□□□□ -1.21
USP40-209ENST00000452724 PDIA4P13667 645 aaKnown RBP7.47□□□□□ -1.21
USP40-209ENST00000452724 SOX18P35713 384 aa7.47□□□□□ -1.21
USP40-209ENST00000452724 TRAIPQ9BWF2 469 aa7.47□□□□□ -1.21
USP40-209ENST00000452724 SMG9Q9H0W8 520 aaKnown RBP7.47□□□□□ -1.21
USP40-209ENST00000452724 STIM2Q9P246 746 aa7.47□□□□□ -1.21
USP40-209ENST00000452724 KCNMB2Q9Y691 235 aa7.47□□□□□ -1.21
USP40-209ENST00000452724 UBAP1LF5GYI3 381 aa7.46□□□□□ -1.22
USP40-209ENST00000452724 ZAP70P43403 619 aa7.46□□□□□ -1.22
USP40-209ENST00000452724 B4GALNT3Q6L9W6 998 aa7.46□□□□□ -1.22
USP40-209ENST00000452724 FMR1NBQ8N0W7 255 aaPredicted RBP7.46□□□□□ -1.22
USP40-209ENST00000452724 LENG1Q96BZ8 264 aaPredicted RBP7.46□□□□□ -1.22
USP40-209ENST00000452724 SEMA6BQ9H3T3 888 aa7.46□□□□□ -1.22
USP40-209ENST00000452724 USP21Q9UK80 565 aa7.46□□□□□ -1.22
USP40-209ENST00000452724 LOC102724428A0A0B4J2F2 783 aa7.45□□□□□ -1.22
USP40-209ENST00000452724 TNFRSF10BO14763 440 aa7.45□□□□□ -1.22
USP40-209ENST00000452724 MMP20O60882 483 aa7.45□□□□□ -1.22
USP40-209ENST00000452724 SSFA2P28290 1259 aa7.45□□□□□ -1.22
USP40-209ENST00000452724 SIK1P57059 783 aa7.45□□□□□ -1.22
USP40-209ENST00000452724 ADGRE1Q14246 886 aa7.45□□□□□ -1.22
USP40-209ENST00000452724 HFE2Q6ZVN8 426 aa7.45□□□□□ -1.22
USP40-209ENST00000452724 HOXD8P13378 290 aaPredicted RBP7.44□□□□□ -1.22
USP40-209ENST00000452724 SELPP16109 830 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms