RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 NPR1P16066 1061 aa16.38■□□□□ 0.21
VPS33A-202ENST00000451053 STYK1Q6J9G0 422 aa16.38■□□□□ 0.21
VPS33A-202ENST00000451053 TTLL11Q8NHH1 800 aa16.38■□□□□ 0.21
VPS33A-202ENST00000451053 RPGRQ92834 1020 aaKnown RBP16.38■□□□□ 0.21
VPS33A-202ENST00000451053 ZNF622Q969S3 477 aaKnown RBP eCLIP16.38■□□□□ 0.21
VPS33A-202ENST00000451053 MASTLQ96GX5 879 aa16.38■□□□□ 0.21
VPS33A-202ENST00000451053 MYH3P11055 1940 aa16.38■□□□□ 0.21
VPS33A-202ENST00000451053 BRCA1P38398 1863 aaKnown RBP16.37■□□□□ 0.21
VPS33A-202ENST00000451053 COL4A1P02462 1669 aa16.37■□□□□ 0.21
VPS33A-202ENST00000451053 ZBTB7BO15156 539 aaPredicted RBP16.37■□□□□ 0.21
VPS33A-202ENST00000451053 GNAI3P08754 354 aa16.37■□□□□ 0.21
VPS33A-202ENST00000451053 HOXA10P31260 410 aaPredicted RBP16.37■□□□□ 0.21
VPS33A-202ENST00000451053 ANKRD44Q8N8A2 993 aa16.37■□□□□ 0.21
VPS33A-202ENST00000451053 BICC1Q9H694 974 aaKnown RBP16.37■□□□□ 0.21
VPS33A-202ENST00000451053 CSF1RP07333 972 aa16.36■□□□□ 0.21
VPS33A-202ENST00000451053 CCDC152Q4G0S7 254 aa16.36■□□□□ 0.21
VPS33A-202ENST00000451053 LMBR1LQ6UX01 489 aa16.36■□□□□ 0.21
VPS33A-202ENST00000451053 RBM17Q96I25 401 aaKnown RBP16.36■□□□□ 0.21
VPS33A-202ENST00000451053 PIM2Q9P1W9 311 aa16.36■□□□□ 0.21
VPS33A-202ENST00000451053 LRRFIP2Q9Y608 721 aaKnown RBP16.36■□□□□ 0.21
VPS33A-202ENST00000451053 FAM161AQ3B820 660 aa16.35■□□□□ 0.21
VPS33A-202ENST00000451053 ERICH6BQ5W0A0 696 aa16.35■□□□□ 0.21
VPS33A-202ENST00000451053 DDX46Q7L014 1031 aaKnown RBP16.35■□□□□ 0.21
VPS33A-202ENST00000451053 CRAMP1Q96RY5 1269 aa16.35■□□□□ 0.21
VPS33A-202ENST00000451053 GREM2Q9H772 168 aa16.35■□□□□ 0.21
VPS33A-202ENST00000451053 SEC31BQ9NQW1 1179 aa16.35■□□□□ 0.21
VPS33A-202ENST00000451053 DDX19BQ9UMR2 479 aa16.35■□□□□ 0.21
VPS33A-202ENST00000451053 TAF1P21675 1872 aa16.35■□□□□ 0.21
VPS33A-202ENST00000451053 CACNA1SQ13698 1873 aa16.35■□□□□ 0.21
VPS33A-202ENST00000451053 RABL6Q3YEC7 729 aaPredicted RBP16.34■□□□□ 0.21
VPS33A-202ENST00000451053 TTLL6Q8N841 843 aa16.34■□□□□ 0.21
VPS33A-202ENST00000451053 CNKSR1Q969H4 720 aa16.34■□□□□ 0.21
VPS33A-202ENST00000451053 C1orf115Q9H7X2 142 aa16.34■□□□□ 0.21
VPS33A-202ENST00000451053 CHMP3Q9Y3E7 222 aa16.34■□□□□ 0.21
VPS33A-202ENST00000451053 RTL9Q8NET4 1388 aa16.34■□□□□ 0.21
VPS33A-202ENST00000451053 SLX4Q8IY92 1834 aa16.33■□□□□ 0.21
VPS33A-202ENST00000451053 GNAI2P04899 355 aa16.33■□□□□ 0.2
VPS33A-202ENST00000451053 ALDH1B1P30837 517 aa16.33■□□□□ 0.2
VPS33A-202ENST00000451053 DALRD3Q5D0E6 543 aaKnown RBP16.33■□□□□ 0.2
VPS33A-202ENST00000451053 PRPF40BQ6NWY9 871 aaKnown RBP16.33■□□□□ 0.2
VPS33A-202ENST00000451053 SLC51AQ86UW1 340 aa16.33■□□□□ 0.2
VPS33A-202ENST00000451053 CELF1Q92879 486 aaKnown RBP16.33■□□□□ 0.2
VPS33A-202ENST00000451053 CRBNQ96SW2 442 aa16.33■□□□□ 0.2
VPS33A-202ENST00000451053 BCS1LQ9Y276 419 aa16.33■□□□□ 0.2
VPS33A-202ENST00000451053 ITGA6P23229 1130 aa16.32■□□□□ 0.2
VPS33A-202ENST00000451053 GRAPQ13588 217 aa16.32■□□□□ 0.2
VPS33A-202ENST00000451053 PELP1Q8IZL8 1130 aaKnown RBP16.32■□□□□ 0.2
VPS33A-202ENST00000451053 GRAPLQ8TC17 118 aaPredicted RBP16.32■□□□□ 0.2
VPS33A-202ENST00000451053 HDAC5Q9UQL6 1122 aa16.32■□□□□ 0.2
VPS33A-202ENST00000451053 YBX3P16989 372 aaKnown RBP eCLIP16.31■□□□□ 0.2
VPS33A-202ENST00000451053 ZBTB40Q9NUA8 1239 aa16.31■□□□□ 0.2
VPS33A-202ENST00000451053 ZNF219Q9P2Y4 722 aaPredicted RBP16.31■□□□□ 0.2
VPS33A-202ENST00000451053 ANKRD18BA2A2Z9 1011 aa16.3■□□□□ 0.2
VPS33A-202ENST00000451053 PPEF1O14829 653 aaPredicted RBP16.3■□□□□ 0.2
VPS33A-202ENST00000451053 IRX6P78412 446 aaPredicted RBP16.3■□□□□ 0.2
VPS33A-202ENST00000451053 IFIT5Q13325 482 aaKnown RBP16.3■□□□□ 0.2
VPS33A-202ENST00000451053 OLFM4Q6UX06 510 aa16.3■□□□□ 0.2
VPS33A-202ENST00000451053 GTF3C3Q9Y5Q9 886 aa16.3■□□□□ 0.2
VPS33A-202ENST00000451053 SPEF2Q9C093 1822 aa16.3■□□□□ 0.2
VPS33A-202ENST00000451053 ARFGEF1Q9Y6D6 1849 aa16.29■□□□□ 0.2
VPS33A-202ENST00000451053 C21orf2O43822 256 aa16.29■□□□□ 0.2
VPS33A-202ENST00000451053 BBOX1O75936 387 aa16.29■□□□□ 0.2
VPS33A-202ENST00000451053 RPS8P62241 208 aaKnown RBP16.29■□□□□ 0.2
VPS33A-202ENST00000451053 CCDC57Q2TAC2 916 aa16.29■□□□□ 0.2
VPS33A-202ENST00000451053 ANKRD18AQ8IVF6 992 aa16.29■□□□□ 0.2
VPS33A-202ENST00000451053 C7orf43Q8WVR3 580 aa16.29■□□□□ 0.2
VPS33A-202ENST00000451053 ZNF594Q96JF6 807 aaPredicted RBP16.29■□□□□ 0.2
VPS33A-202ENST00000451053 CDC5LQ99459 802 aaKnown RBP16.29■□□□□ 0.2
VPS33A-202ENST00000451053 RFX5P48382 616 aaPredicted RBP16.28■□□□□ 0.2
VPS33A-202ENST00000451053 MTX1Q13505 466 aa16.28■□□□□ 0.2
VPS33A-202ENST00000451053 CHMP4BQ9H444 224 aaKnown RBP16.28■□□□□ 0.2
VPS33A-202ENST00000451053 PNMA6EA0A0J9YXQ4 647 aa16.27■□□□□ 0.2
VPS33A-202ENST00000451053 AAMPQ13685 434 aa16.27■□□□□ 0.2
VPS33A-202ENST00000451053 GPR162Q16538 588 aa16.27■□□□□ 0.2
VPS33A-202ENST00000451053 EXOC6Q8TAG9 804 aa16.27■□□□□ 0.2
VPS33A-202ENST00000451053 KLHDC4Q8TBB5 520 aa16.27■□□□□ 0.2
VPS33A-202ENST00000451053 ATP6V0A2Q9Y487 856 aa16.27■□□□□ 0.2
VPS33A-202ENST00000451053 LRRC37AA6NMS7 1700 aa16.27■□□□□ 0.19
VPS33A-202ENST00000451053 SRGAP3O43295 1099 aa16.26■□□□□ 0.19
VPS33A-202ENST00000451053 IGHMBP2P38935 993 aaKnown RBP16.26■□□□□ 0.19
VPS33A-202ENST00000451053 TAF7LQ5H9L4 462 aa16.26■□□□□ 0.19
VPS33A-202ENST00000451053 CEP85Q6P2H3 762 aa16.26■□□□□ 0.19
VPS33A-202ENST00000451053 SP8Q8IXZ3 490 aa16.26■□□□□ 0.19
VPS33A-202ENST00000451053 ATP8B2P98198 1209 aa16.25■□□□□ 0.19
VPS33A-202ENST00000451053 TMC4Q7Z404 712 aa16.25■□□□□ 0.19
VPS33A-202ENST00000451053 PUS3Q9BZE2 481 aaKnown RBP16.25■□□□□ 0.19
VPS33A-202ENST00000451053 BSDC1Q9NW68 430 aaPredicted RBP16.25■□□□□ 0.19
VPS33A-202ENST00000451053 SNED1Q8TER0 1413 aa16.25■□□□□ 0.19
VPS33A-202ENST00000451053 SRCAPQ6ZRS2 3230 aa16.24■□□□□ 0.19
VPS33A-202ENST00000451053 PTPN12Q05209 780 aaKnown RBP16.24■□□□□ 0.19
VPS33A-202ENST00000451053 CCDC93Q567U6 631 aa16.24■□□□□ 0.19
VPS33A-202ENST00000451053 MPHOSPH8Q99549 860 aa16.24■□□□□ 0.19
VPS33A-202ENST00000451053 PA2G4Q9UQ80 394 aaKnown RBP16.24■□□□□ 0.19
VPS33A-202ENST00000451053 POLA2Q14181 598 aa16.23■□□□□ 0.19
VPS33A-202ENST00000451053 SOGA3Q5TF21 947 aa16.23■□□□□ 0.19
VPS33A-202ENST00000451053 LDHAL6AQ6ZMR3 332 aa16.23■□□□□ 0.19
VPS33A-202ENST00000451053 SIRT2Q8IXJ6 389 aa16.23■□□□□ 0.19
VPS33A-202ENST00000451053 SSH3Q8TE77 659 aa16.23■□□□□ 0.19
VPS33A-202ENST00000451053 MINPP1Q9UNW1 487 aa16.23■□□□□ 0.19
VPS33A-202ENST00000451053 GPSM2P81274 684 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms