RNA–Protein interactions for RNA: ENST00000450867.1

COL3A1-203, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL3A1, Length 268 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-203ENST00000450867 NFKBIEO00221 500 aa18.21■□□□□ 0.51
COL3A1-203ENST00000450867 CC2D2BQ6DHV5 1058 aa18.21■□□□□ 0.51
COL3A1-203ENST00000450867 DDX46Q7L014 1031 aaKnown RBP18.21■□□□□ 0.51
COL3A1-203ENST00000450867 API5Q9BZZ5 524 aaKnown RBP18.21■□□□□ 0.51
COL3A1-203ENST00000450867 NOB1Q9ULX3 412 aaKnown RBP18.21■□□□□ 0.51
COL3A1-203ENST00000450867 SPEF2Q9C093 1822 aa18.21■□□□□ 0.51
COL3A1-203ENST00000450867 GRM8O00222 908 aa18.2■□□□□ 0.5
COL3A1-203ENST00000450867 BBOX1O75936 387 aa18.2■□□□□ 0.5
COL3A1-203ENST00000450867 CTSWP56202 376 aa18.2■□□□□ 0.5
COL3A1-203ENST00000450867 GRAPQ13588 217 aa18.2■□□□□ 0.5
COL3A1-203ENST00000450867 CCDC93Q567U6 631 aa18.2■□□□□ 0.5
COL3A1-203ENST00000450867 TMC4Q7Z404 712 aa18.2■□□□□ 0.5
COL3A1-203ENST00000450867 GRAPLQ8TC17 118 aaPredicted RBP18.2■□□□□ 0.5
COL3A1-203ENST00000450867 CCDC152Q4G0S7 254 aa18.19■□□□□ 0.5
COL3A1-203ENST00000450867 GRIPAP1Q4V328 841 aa18.19■□□□□ 0.5
COL3A1-203ENST00000450867 SLC4A10Q6U841 1118 aa18.19■□□□□ 0.5
COL3A1-203ENST00000450867 JARID2Q92833 1246 aaPredicted RBP18.19■□□□□ 0.5
COL3A1-203ENST00000450867 PPEF1O14829 653 aaPredicted RBP18.18■□□□□ 0.5
COL3A1-203ENST00000450867 BCAR3O75815 825 aa18.18■□□□□ 0.5
COL3A1-203ENST00000450867 CSF1RP07333 972 aa18.18■□□□□ 0.5
COL3A1-203ENST00000450867 TTLL11Q8NHH1 800 aa18.18■□□□□ 0.5
COL3A1-203ENST00000450867 ATP6V0A2Q9Y487 856 aa18.18■□□□□ 0.5
COL3A1-203ENST00000450867 IPO8O15397 1037 aaKnown RBP18.17■□□□□ 0.5
COL3A1-203ENST00000450867 CCT4P50991 539 aaKnown RBP18.17■□□□□ 0.5
COL3A1-203ENST00000450867 PRELPP51888 382 aa18.17■□□□□ 0.5
COL3A1-203ENST00000450867 RTKN2Q8IZC4 609 aa18.17■□□□□ 0.5
COL3A1-203ENST00000450867 A0A1B0GUL6 1792 aa18.17■□□□□ 0.5
COL3A1-203ENST00000450867 DUOX1Q9NRD9 1551 aa18.17■□□□□ 0.5
COL3A1-203ENST00000450867 LMNB1P20700 586 aa18.16■□□□□ 0.5
COL3A1-203ENST00000450867 YY1P25490 414 aa18.16■□□□□ 0.5
COL3A1-203ENST00000450867 RASSF7Q02833 373 aa18.16■□□□□ 0.5
COL3A1-203ENST00000450867 SP8Q8IXZ3 490 aa18.16■□□□□ 0.5
COL3A1-203ENST00000450867 CELF1Q92879 486 aaKnown RBP18.16■□□□□ 0.5
COL3A1-203ENST00000450867 PSMD1Q99460 953 aa18.16■□□□□ 0.5
COL3A1-203ENST00000450867 TAOK3Q9H2K8 898 aa18.16■□□□□ 0.5
COL3A1-203ENST00000450867 ZNF219Q9P2Y4 722 aaPredicted RBP18.16■□□□□ 0.5
COL3A1-203ENST00000450867 ZC3H4Q9UPT8 1303 aaKnown RBP18.16■□□□□ 0.5
COL3A1-203ENST00000450867 TRIM27P14373 513 aa18.15■□□□□ 0.5
COL3A1-203ENST00000450867 FOXO4P98177 505 aa18.15■□□□□ 0.5
COL3A1-203ENST00000450867 FKBP4Q02790 459 aaKnown RBP eCLIP18.15■□□□□ 0.5
COL3A1-203ENST00000450867 OLFM4Q6UX06 510 aa18.15■□□□□ 0.5
COL3A1-203ENST00000450867 ATF7IPQ6VMQ6 1270 aa18.15■□□□□ 0.5
COL3A1-203ENST00000450867 USP44Q9H0E7 712 aa18.15■□□□□ 0.5
COL3A1-203ENST00000450867 C9orf78Q9NZ63 289 aaPredicted RBP18.15■□□□□ 0.5
COL3A1-203ENST00000450867 RPS8P62241 208 aaKnown RBP18.14■□□□□ 0.49
COL3A1-203ENST00000450867 INTS3Q68E01 1043 aaKnown RBP18.14■□□□□ 0.49
COL3A1-203ENST00000450867 SEC31BQ9NQW1 1179 aa18.14■□□□□ 0.49
COL3A1-203ENST00000450867 NBPF7P0C2Y1 421 aaPredicted RBP18.13■□□□□ 0.49
COL3A1-203ENST00000450867 C9orf131Q5VYM1 1079 aa18.13■□□□□ 0.49
COL3A1-203ENST00000450867 SLC51AQ86UW1 340 aa18.13■□□□□ 0.49
COL3A1-203ENST00000450867 KAZALD1Q96I82 304 aa18.13■□□□□ 0.49
COL3A1-203ENST00000450867 RTFDC1Q9BY42 306 aaPredicted RBP18.13■□□□□ 0.49
COL3A1-203ENST00000450867 GREM2Q9H772 168 aa18.13■□□□□ 0.49
COL3A1-203ENST00000450867 EPHA10Q5JZY3 1008 aa18.12■□□□□ 0.49
COL3A1-203ENST00000450867 ZKSCAN2Q63HK3 967 aa18.12■□□□□ 0.49
COL3A1-203ENST00000450867 CDC5LQ99459 802 aaKnown RBP18.12■□□□□ 0.49
COL3A1-203ENST00000450867 RNF181Q9P0P0 153 aa18.12■□□□□ 0.49
COL3A1-203ENST00000450867 RABL6Q3YEC7 729 aaPredicted RBP18.11■□□□□ 0.49
COL3A1-203ENST00000450867 COL4A5P29400 1685 aa18.1■□□□□ 0.49
COL3A1-203ENST00000450867 FAM161AQ3B820 660 aa18.1■□□□□ 0.49
COL3A1-203ENST00000450867 FRAT1Q92837 279 aaPredicted RBP18.1■□□□□ 0.49
COL3A1-203ENST00000450867 SUCLG2Q96I99 432 aa18.1■□□□□ 0.49
COL3A1-203ENST00000450867 TMX4Q9H1E5 349 aaPredicted RBP18.1■□□□□ 0.49
COL3A1-203ENST00000450867 VPS33BQ9H267 617 aa18.1■□□□□ 0.49
COL3A1-203ENST00000450867 ITGA6P23229 1130 aa18.09■□□□□ 0.49
COL3A1-203ENST00000450867 LMBR1LQ6UX01 489 aa18.09■□□□□ 0.49
COL3A1-203ENST00000450867 ANKRD18AQ8IVF6 992 aa18.09■□□□□ 0.49
COL3A1-203ENST00000450867 CCDC85AQ96PX6 553 aaPredicted RBP18.09■□□□□ 0.49
COL3A1-203ENST00000450867 BSDC1Q9NW68 430 aaPredicted RBP18.09■□□□□ 0.49
COL3A1-203ENST00000450867 PODXL2Q9NZ53 605 aa18.09■□□□□ 0.49
COL3A1-203ENST00000450867 TNNQ9UQP3 1299 aa18.09■□□□□ 0.49
COL3A1-203ENST00000450867 MPNDQ8N594 471 aa18.08■□□□□ 0.48
COL3A1-203ENST00000450867 ANKRD44Q8N8A2 993 aa18.08■□□□□ 0.48
COL3A1-203ENST00000450867 RCAN3Q9UKA8 241 aa18.08■□□□□ 0.48
COL3A1-203ENST00000450867 IARSP41252 1262 aaKnown RBP18.07■□□□□ 0.48
COL3A1-203ENST00000450867 DPP8Q6V1X1 898 aaPredicted RBP18.07■□□□□ 0.48
COL3A1-203ENST00000450867 ZNF784Q8NCA9 323 aaPredicted RBP18.07■□□□□ 0.48
COL3A1-203ENST00000450867 SUPT20HQ8NEM7 779 aa18.07■□□□□ 0.48
COL3A1-203ENST00000450867 BICC1Q9H694 974 aaKnown RBP18.07■□□□□ 0.48
COL3A1-203ENST00000450867 ZNF277Q9NRM2 450 aaPredicted RBP18.07■□□□□ 0.48
COL3A1-203ENST00000450867 PSME4Q14997 1843 aa18.07■□□□□ 0.48
COL3A1-203ENST00000450867 WDR90Q96KV7 1748 aa18.06■□□□□ 0.48
COL3A1-203ENST00000450867 ANKRD18BA2A2Z9 1011 aa18.06■□□□□ 0.48
COL3A1-203ENST00000450867 UBTFL1P0CB47 393 aaPredicted RBP18.05■□□□□ 0.48
COL3A1-203ENST00000450867 IGHMBP2P38935 993 aaKnown RBP18.05■□□□□ 0.48
COL3A1-203ENST00000450867 GPSM2P81274 684 aa18.05■□□□□ 0.48
COL3A1-203ENST00000450867 IFIT5Q13325 482 aaKnown RBP18.05■□□□□ 0.48
COL3A1-203ENST00000450867 DZIP1LQ8IYY4 767 aaKnown RBP18.05■□□□□ 0.48
COL3A1-203ENST00000450867 MEIS3Q99687 375 aa18.05■□□□□ 0.48
COL3A1-203ENST00000450867 HDAC5Q9UQL6 1122 aa18.05■□□□□ 0.48
COL3A1-203ENST00000450867 XDHP47989 1333 aa18.04■□□□□ 0.48
COL3A1-203ENST00000450867 GNAI3P08754 354 aa18.04■□□□□ 0.48
COL3A1-203ENST00000450867 KIAA2012Q0VF49 1180 aa18.04■□□□□ 0.48
COL3A1-203ENST00000450867 TMEM57Q8N5G2 664 aa18.04■□□□□ 0.48
COL3A1-203ENST00000450867 CLUAP1Q96AJ1 413 aa18.04■□□□□ 0.48
COL3A1-203ENST00000450867 MINPP1Q9UNW1 487 aa18.04■□□□□ 0.48
COL3A1-203ENST00000450867 SCN4AP35499 1836 aa18.03■□□□□ 0.48
COL3A1-203ENST00000450867 RLBP1P12271 317 aa18.03■□□□□ 0.48
COL3A1-203ENST00000450867 CCDC57Q2TAC2 916 aa18.03■□□□□ 0.48
COL3A1-203ENST00000450867 TBC1D16Q8TBP0 767 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms