RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 SF3B3Q15393 1217 aaKnown RBP19.85■□□□□ 0.77
LIMS1-210ENST00000449684 NIM1KQ8IY84 436 aa19.85■□□□□ 0.77
LIMS1-210ENST00000449684 LAMB2P55268 1798 aa19.85■□□□□ 0.77
LIMS1-210ENST00000449684 VAMP4O75379 141 aa19.84■□□□□ 0.77
LIMS1-210ENST00000449684 PCCAP05165 728 aaPredicted RBP19.84■□□□□ 0.77
LIMS1-210ENST00000449684 FKBP5Q13451 457 aaPredicted RBP19.84■□□□□ 0.77
LIMS1-210ENST00000449684 G2E3Q7L622 706 aa19.84■□□□□ 0.77
LIMS1-210ENST00000449684 WDR90Q96KV7 1748 aa19.84■□□□□ 0.77
LIMS1-210ENST00000449684 ZNF541Q9H0D2 1346 aa19.83■□□□□ 0.77
LIMS1-210ENST00000449684 POTECB2RU33 542 aa19.83■□□□□ 0.77
LIMS1-210ENST00000449684 FZD9O00144 591 aa19.83■□□□□ 0.77
LIMS1-210ENST00000449684 FLIIQ13045 1269 aa19.83■□□□□ 0.77
LIMS1-210ENST00000449684 SLC51AQ86UW1 340 aa19.83■□□□□ 0.77
LIMS1-210ENST00000449684 JARID2Q92833 1246 aaPredicted RBP19.83■□□□□ 0.77
LIMS1-210ENST00000449684 VPS33BQ9H267 617 aa19.83■□□□□ 0.77
LIMS1-210ENST00000449684 GJA3Q9Y6H8 435 aa19.83■□□□□ 0.77
LIMS1-210ENST00000449684 DDX60Q8IY21 1712 aaKnown RBP19.82■□□□□ 0.76
LIMS1-210ENST00000449684 PDE8AO60658 829 aa19.82■□□□□ 0.76
LIMS1-210ENST00000449684 AOC3Q16853 763 aa19.82■□□□□ 0.76
LIMS1-210ENST00000449684 CCDC152Q4G0S7 254 aa19.82■□□□□ 0.76
LIMS1-210ENST00000449684 SPINK5Q9NQ38 1064 aaPredicted RBP19.82■□□□□ 0.76
LIMS1-210ENST00000449684 SNED1Q8TER0 1413 aa19.82■□□□□ 0.76
LIMS1-210ENST00000449684 GPC2Q8N158 579 aa19.81■□□□□ 0.76
LIMS1-210ENST00000449684 CELF1Q92879 486 aaKnown RBP19.81■□□□□ 0.76
LIMS1-210ENST00000449684 L3MBTL3Q96JM7 780 aaPredicted RBP19.81■□□□□ 0.76
LIMS1-210ENST00000449684 HACL1Q9UJ83 578 aa19.81■□□□□ 0.76
LIMS1-210ENST00000449684 IGKV5-2P06315 115 aa19.8■□□□□ 0.76
LIMS1-210ENST00000449684 RPS8P62241 208 aaKnown RBP19.8■□□□□ 0.76
LIMS1-210ENST00000449684 EAPPQ56P03 285 aaPredicted RBP19.8■□□□□ 0.76
LIMS1-210ENST00000449684 CCDC85AQ96PX6 553 aaPredicted RBP19.8■□□□□ 0.76
LIMS1-210ENST00000449684 NSFL1CQ9UNZ2 370 aaKnown RBP19.8■□□□□ 0.76
LIMS1-210ENST00000449684 LMOD1P29536 600 aaPredicted RBP19.79■□□□□ 0.76
LIMS1-210ENST00000449684 CWF19L2Q2TBE0 894 aaKnown RBP19.79■□□□□ 0.76
LIMS1-210ENST00000449684 DNAAF4Q8WXU2 420 aa19.79■□□□□ 0.76
LIMS1-210ENST00000449684 RTFDC1Q9BY42 306 aaPredicted RBP19.79■□□□□ 0.76
LIMS1-210ENST00000449684 CLEC11AQ9Y240 323 aa19.79■□□□□ 0.76
LIMS1-210ENST00000449684 TAF1P21675 1872 aa19.78■□□□□ 0.76
LIMS1-210ENST00000449684 NEURL1BA8MQ27 555 aa19.78■□□□□ 0.76
LIMS1-210ENST00000449684 C6orf229H3BNL8 230 aa19.78■□□□□ 0.76
LIMS1-210ENST00000449684 CHADLQ6NUI6 762 aa19.78■□□□□ 0.76
LIMS1-210ENST00000449684 TAF1DQ9H5J8 278 aaPredicted RBP19.78■□□□□ 0.76
LIMS1-210ENST00000449684 CDHR2Q9BYE9 1310 aa19.77■□□□□ 0.76
LIMS1-210ENST00000449684 EPHX2P34913 555 aa19.77■□□□□ 0.76
LIMS1-210ENST00000449684 SEC31BQ9NQW1 1179 aa19.77■□□□□ 0.76
LIMS1-210ENST00000449684 ZNRF3Q9ULT6 936 aa19.77■□□□□ 0.76
LIMS1-210ENST00000449684 CEP350Q5VT06 3117 aa19.76■□□□□ 0.75
LIMS1-210ENST00000449684 CACNA1FO60840 1977 aa19.76■□□□□ 0.75
LIMS1-210ENST00000449684 CCER2I3L3R5 266 aa19.76■□□□□ 0.75
LIMS1-210ENST00000449684 KIAA2012Q0VF49 1180 aa19.76■□□□□ 0.75
LIMS1-210ENST00000449684 WASHC4Q2M389 1173 aa19.76■□□□□ 0.75
LIMS1-210ENST00000449684 UBE3BQ7Z3V4 1068 aa19.76■□□□□ 0.75
LIMS1-210ENST00000449684 EYA3Q99504 573 aa19.76■□□□□ 0.75
LIMS1-210ENST00000449684 SCN4AP35499 1836 aa19.76■□□□□ 0.75
LIMS1-210ENST00000449684 E9PSI1 815 aa19.75■□□□□ 0.75
LIMS1-210ENST00000449684 CTSWP56202 376 aa19.75■□□□□ 0.75
LIMS1-210ENST00000449684 PNMA8AQ86V59 439 aaPredicted RBP19.75■□□□□ 0.75
LIMS1-210ENST00000449684 LDHDQ86WU2 507 aa19.75■□□□□ 0.75
LIMS1-210ENST00000449684 ANKRD18AQ8IVF6 992 aa19.75■□□□□ 0.75
LIMS1-210ENST00000449684 LINS1Q8NG48 757 aa19.75■□□□□ 0.75
LIMS1-210ENST00000449684 CDC5LQ99459 802 aaKnown RBP19.75■□□□□ 0.75
LIMS1-210ENST00000449684 ANKIB1Q9P2G1 1089 aa19.75■□□□□ 0.75
LIMS1-210ENST00000449684 G3V3G9 751 aa19.74■□□□□ 0.75
LIMS1-210ENST00000449684 POTEIP0CG38 1075 aa19.74■□□□□ 0.75
LIMS1-210ENST00000449684 POTEJP0CG39 1038 aa19.74■□□□□ 0.75
LIMS1-210ENST00000449684 GPSM2P81274 684 aa19.74■□□□□ 0.75
LIMS1-210ENST00000449684 GCKRQ14397 625 aa19.74■□□□□ 0.75
LIMS1-210ENST00000449684 DCAF8Q5TAQ9 597 aa19.74■□□□□ 0.75
LIMS1-210ENST00000449684 ZNF521Q96K83 1311 aa19.74■□□□□ 0.75
LIMS1-210ENST00000449684 COL4A5P29400 1685 aa19.73■□□□□ 0.75
LIMS1-210ENST00000449684 RIMBP2O15034 1052 aa19.73■□□□□ 0.75
LIMS1-210ENST00000449684 HTRA3P83110 453 aa19.73■□□□□ 0.75
LIMS1-210ENST00000449684 TNIP1Q15025 636 aa19.73■□□□□ 0.75
LIMS1-210ENST00000449684 CIAPIN1Q6FI81 312 aa19.73■□□□□ 0.75
LIMS1-210ENST00000449684 F6X3S4 739 aa19.72■□□□□ 0.75
LIMS1-210ENST00000449684 H7C1W4 665 aa19.72■□□□□ 0.75
LIMS1-210ENST00000449684 RAD17O75943 681 aa19.72■□□□□ 0.75
LIMS1-210ENST00000449684 CXCL9Q07325 125 aa19.72■□□□□ 0.75
LIMS1-210ENST00000449684 BCL2L13Q9BXK5 485 aa19.72■□□□□ 0.75
LIMS1-210ENST00000449684 TTLL11Q8NHH1 800 aa19.71■□□□□ 0.75
LIMS1-210ENST00000449684 ZC3H12CQ9C0D7 883 aaKnown RBP19.71■□□□□ 0.75
LIMS1-210ENST00000449684 POLLQ9UGP5 575 aa19.71■□□□□ 0.75
LIMS1-210ENST00000449684 GGA1Q9UJY5 639 aa19.71■□□□□ 0.75
LIMS1-210ENST00000449684 UFL1O94874 794 aa19.7■□□□□ 0.74
LIMS1-210ENST00000449684 SLC4A10Q6U841 1118 aa19.7■□□□□ 0.74
LIMS1-210ENST00000449684 TBC1D16Q8TBP0 767 aa19.7■□□□□ 0.74
LIMS1-210ENST00000449684 LRRC37AA6NMS7 1700 aa19.7■□□□□ 0.74
LIMS1-210ENST00000449684 IGHMBP2P38935 993 aaKnown RBP19.69■□□□□ 0.74
LIMS1-210ENST00000449684 EPS15P42566 896 aa19.69■□□□□ 0.74
LIMS1-210ENST00000449684 GREM2Q9H772 168 aa19.69■□□□□ 0.74
LIMS1-210ENST00000449684 DBNDD1Q9H9R9 158 aa19.69■□□□□ 0.74
LIMS1-210ENST00000449684 SCNN1DP51172 638 aa19.68■□□□□ 0.74
LIMS1-210ENST00000449684 SLFN5Q08AF3 891 aa19.68■□□□□ 0.74
LIMS1-210ENST00000449684 GPR101Q96P66 508 aaPredicted RBP19.68■□□□□ 0.74
LIMS1-210ENST00000449684 PODXL2Q9NZ53 605 aa19.68■□□□□ 0.74
LIMS1-210ENST00000449684 XDHP47989 1333 aa19.68■□□□□ 0.74
LIMS1-210ENST00000449684 GMPSP49915 693 aaPredicted RBP19.67■□□□□ 0.74
LIMS1-210ENST00000449684 DOK7Q18PE1 504 aa19.67■□□□□ 0.74
LIMS1-210ENST00000449684 BEND3Q5T5X7 828 aa19.67■□□□□ 0.74
LIMS1-210ENST00000449684 USP50Q70EL3 339 aaPredicted RBP19.67■□□□□ 0.74
LIMS1-210ENST00000449684 DNAJC5GQ8N7S2 189 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms