RNA–Protein interactions for RNA: ENST00000449049.7

SHMT2-203, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2 BASIC

Gene SHMT2, Length 2,121 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-203ENST00000449049 RTL9Q8NET4 1388 aa17.51■□□□□ 0.39
SHMT2-203ENST00000449049 PSDA5PKW4 1024 aaPredicted RBP17.51■□□□□ 0.39
SHMT2-203ENST00000449049 NPHP1O15259 732 aa17.51■□□□□ 0.39
SHMT2-203ENST00000449049 ANKRD31Q8N7Z5 1873 aa17.51■□□□□ 0.39
SHMT2-203ENST00000449049 RFX5P48382 616 aaPredicted RBP17.5■□□□□ 0.39
SHMT2-203ENST00000449049 SF3B3Q15393 1217 aaKnown RBP17.5■□□□□ 0.39
SHMT2-203ENST00000449049 C3orf67Q6ZVT6 689 aa17.5■□□□□ 0.39
SHMT2-203ENST00000449049 CCDC24Q8N4L8 307 aa17.5■□□□□ 0.39
SHMT2-203ENST00000449049 NLRP3Q96P20 1036 aa17.5■□□□□ 0.39
SHMT2-203ENST00000449049 ZBTB7AO95365 584 aa17.49■□□□□ 0.39
SHMT2-203ENST00000449049 FAM161AQ3B820 660 aa17.49■□□□□ 0.39
SHMT2-203ENST00000449049 CENPQQ7L2Z9 268 aaPredicted RBP17.49■□□□□ 0.39
SHMT2-203ENST00000449049 GREM2Q9H772 168 aa17.49■□□□□ 0.39
SHMT2-203ENST00000449049 LRP5O75197 1615 aa17.48■□□□□ 0.39
SHMT2-203ENST00000449049 CCDC152Q4G0S7 254 aa17.48■□□□□ 0.39
SHMT2-203ENST00000449049 DCTPP1Q9H773 170 aa17.48■□□□□ 0.39
SHMT2-203ENST00000449049 CHMP3Q9Y3E7 222 aa17.48■□□□□ 0.39
SHMT2-203ENST00000449049 SMC5Q8IY18 1101 aa17.48■□□□□ 0.39
SHMT2-203ENST00000449049 GCC1Q96CN9 775 aa17.47■□□□□ 0.39
SHMT2-203ENST00000449049 CCDC85AQ96PX6 553 aaPredicted RBP17.47■□□□□ 0.39
SHMT2-203ENST00000449049 BRIP1Q9BX63 1249 aa17.47■□□□□ 0.39
SHMT2-203ENST00000449049 COPRSQ9NQ92 184 aa17.47■□□□□ 0.39
SHMT2-203ENST00000449049 KLRG2A4D1S0 409 aaPredicted RBP17.47■□□□□ 0.39
SHMT2-203ENST00000449049 ITGA6P23229 1130 aa17.47■□□□□ 0.39
SHMT2-203ENST00000449049 PTPN12Q05209 780 aaKnown RBP17.47■□□□□ 0.39
SHMT2-203ENST00000449049 IFIT5Q13325 482 aaKnown RBP17.47■□□□□ 0.39
SHMT2-203ENST00000449049 CCDC57Q2TAC2 916 aa17.47■□□□□ 0.39
SHMT2-203ENST00000449049 NOP58Q9Y2X3 529 aaKnown RBP17.47■□□□□ 0.39
SHMT2-203ENST00000449049 CRY2Q49AN0 593 aa17.46■□□□□ 0.39
SHMT2-203ENST00000449049 C10orf71Q711Q0 1435 aa17.46■□□□□ 0.39
SHMT2-203ENST00000449049 KIF13BQ9NQT8 1826 aa17.45■□□□□ 0.38
SHMT2-203ENST00000449049 ANKRD18BA2A2Z9 1011 aa17.45■□□□□ 0.38
SHMT2-203ENST00000449049 SGIP1Q9BQI5 828 aa17.45■□□□□ 0.38
SHMT2-203ENST00000449049 PA2G4Q9UQ80 394 aaKnown RBP17.45■□□□□ 0.38
SHMT2-203ENST00000449049 ATF5Q9Y2D1 282 aaPredicted RBP17.45■□□□□ 0.38
SHMT2-203ENST00000449049 SOCS7O14512 581 aa17.45■□□□□ 0.38
SHMT2-203ENST00000449049 KLHDC4Q8TBB5 520 aa17.45■□□□□ 0.38
SHMT2-203ENST00000449049 COL4A1P02462 1669 aa17.45■□□□□ 0.38
SHMT2-203ENST00000449049 COL11A2P13942 1736 aaPredicted RBP17.45■□□□□ 0.38
SHMT2-203ENST00000449049 SURF6O75683 361 aaKnown RBP17.44■□□□□ 0.38
SHMT2-203ENST00000449049 POLD1P28340 1107 aa17.44■□□□□ 0.38
SHMT2-203ENST00000449049 EXOC6BQ9Y2D4 811 aa17.44■□□□□ 0.38
SHMT2-203ENST00000449049 PDE6BP35913 854 aa17.43■□□□□ 0.38
SHMT2-203ENST00000449049 HSP90AB4PQ58FF6 505 aa17.43■□□□□ 0.38
SHMT2-203ENST00000449049 ZNF594Q96JF6 807 aaPredicted RBP17.43■□□□□ 0.38
SHMT2-203ENST00000449049 SEC31BQ9NQW1 1179 aa17.43■□□□□ 0.38
SHMT2-203ENST00000449049 FBXO3Q9UK99 471 aa17.43■□□□□ 0.38
SHMT2-203ENST00000449049 SPEF2Q9C093 1822 aa17.42■□□□□ 0.38
SHMT2-203ENST00000449049 RAB11FIP3O75154 756 aa17.42■□□□□ 0.38
SHMT2-203ENST00000449049 PTGER2P43116 358 aa17.42■□□□□ 0.38
SHMT2-203ENST00000449049 CDC5LQ99459 802 aaKnown RBP17.42■□□□□ 0.38
SHMT2-203ENST00000449049 CIAO1O76071 339 aa17.41■□□□□ 0.38
SHMT2-203ENST00000449049 HOXA10P31260 410 aaPredicted RBP17.41■□□□□ 0.38
SHMT2-203ENST00000449049 TAF7LQ5H9L4 462 aa17.41■□□□□ 0.38
SHMT2-203ENST00000449049 TAF1P21675 1872 aa17.41■□□□□ 0.38
SHMT2-203ENST00000449049 EYA2O00167 538 aa17.41■□□□□ 0.38
SHMT2-203ENST00000449049 G3BP1Q13283 466 aaKnown RBP eCLIP17.41■□□□□ 0.382e-7■■■□□ 18
SHMT2-203ENST00000449049 DDX46Q7L014 1031 aaKnown RBP17.41■□□□□ 0.38
SHMT2-203ENST00000449049 RPGRQ92834 1020 aaKnown RBP17.41■□□□□ 0.38
SHMT2-203ENST00000449049 BCL11AQ9H165 835 aa17.41■□□□□ 0.38
SHMT2-203ENST00000449049 SIL1Q9H173 461 aa17.41■□□□□ 0.38
SHMT2-203ENST00000449049 PDZRN3Q9UPQ7 1066 aa17.41■□□□□ 0.38
SHMT2-203ENST00000449049 DLEC1Q9Y238 1755 aa17.4■□□□□ 0.38
SHMT2-203ENST00000449049 ATG9AQ7Z3C6 839 aa17.4■□□□□ 0.38
SHMT2-203ENST00000449049 SRGNP10124 158 aa17.39■□□□□ 0.38
SHMT2-203ENST00000449049 NUCB1Q02818 461 aa17.39■□□□□ 0.38
SHMT2-203ENST00000449049 ERC1Q8IUD2 1116 aa17.39■□□□□ 0.38
SHMT2-203ENST00000449049 RBM17Q96I25 401 aaKnown RBP17.39■□□□□ 0.38
SHMT2-203ENST00000449049 KIAA1551Q9HCM1 1747 aa17.39■□□□□ 0.37
SHMT2-203ENST00000449049 SASH1O94885 1247 aa17.39■□□□□ 0.37
SHMT2-203ENST00000449049 IGHMBP2P38935 993 aaKnown RBP17.39■□□□□ 0.37
SHMT2-203ENST00000449049 IL15P40933 162 aaPredicted RBP17.39■□□□□ 0.37
SHMT2-203ENST00000449049 GRAPQ13588 217 aa17.39■□□□□ 0.37
SHMT2-203ENST00000449049 LRRC24Q50LG9 513 aa17.39■□□□□ 0.37
SHMT2-203ENST00000449049 ANKRD18AQ8IVF6 992 aa17.39■□□□□ 0.37
SHMT2-203ENST00000449049 GRAPLQ8TC17 118 aaPredicted RBP17.39■□□□□ 0.37
SHMT2-203ENST00000449049 CELF1Q92879 486 aaKnown RBP17.39■□□□□ 0.37
SHMT2-203ENST00000449049 CRAMP1Q96RY5 1269 aa17.39■□□□□ 0.37
SHMT2-203ENST00000449049 PUS3Q9BZE2 481 aaKnown RBP17.39■□□□□ 0.37
SHMT2-203ENST00000449049 NPR1P16066 1061 aa17.38■□□□□ 0.37
SHMT2-203ENST00000449049 OS9Q13438 667 aaPredicted RBP17.38■□□□□ 0.37
SHMT2-203ENST00000449049 LDHAL6AQ6ZMR3 332 aa17.38■□□□□ 0.37
SHMT2-203ENST00000449049 RHPN1Q8TCX5 695 aa17.38■□□□□ 0.37
SHMT2-203ENST00000449049 KIF1BPQ96EK5 621 aa17.38■□□□□ 0.37
SHMT2-203ENST00000449049 LRRCC1Q9C099 1032 aa17.38■□□□□ 0.37
SHMT2-203ENST00000449049 SPON1Q9HCB6 807 aa17.38■□□□□ 0.37
SHMT2-203ENST00000449049 RIPOR2Q9Y4F9 1068 aa17.38■□□□□ 0.37
SHMT2-203ENST00000449049 A0A1B0GUL6 1792 aa17.38■□□□□ 0.37
SHMT2-203ENST00000449049 ANKRD45Q5TZF3 282 aa17.38■□□□□ 0.37
SHMT2-203ENST00000449049 C2CD5Q86YS7 1000 aa17.38■□□□□ 0.37
SHMT2-203ENST00000449049 APBB1O00213 710 aa17.37■□□□□ 0.37
SHMT2-203ENST00000449049 RPS8P62241 208 aaKnown RBP17.37■□□□□ 0.37
SHMT2-203ENST00000449049 CHD1LQ86WJ1 897 aa17.37■□□□□ 0.37
SHMT2-203ENST00000449049 MASTLQ96GX5 879 aa17.37■□□□□ 0.37
SHMT2-203ENST00000449049 MPHOSPH8Q99549 860 aa17.37■□□□□ 0.37
SHMT2-203ENST00000449049 H0YIN7 160 aa17.36■□□□□ 0.37
SHMT2-203ENST00000449049 CNNM1Q9NRU3 951 aa17.36■□□□□ 0.37
SHMT2-203ENST00000449049 BSDC1Q9NW68 430 aaPredicted RBP17.36■□□□□ 0.37
SHMT2-203ENST00000449049 LRRC37AA6NMS7 1700 aa17.36■□□□□ 0.37
SHMT2-203ENST00000449049 STYK1Q6J9G0 422 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms