RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 DDX58O95786 925 aaKnown RBP9.15□□□□□ -0.94
VPS41-208ENST00000448833 ANXA1P04083 346 aa9.15□□□□□ -0.94
VPS41-208ENST00000448833 GOLGA2Q08379 1002 aa9.15□□□□□ -0.94
VPS41-208ENST00000448833 GRAPQ13588 217 aa9.15□□□□□ -0.94
VPS41-208ENST00000448833 DUSP27Q5VZP5 1158 aa9.15□□□□□ -0.94
VPS41-208ENST00000448833 OLFM4Q6UX06 510 aa9.15□□□□□ -0.94
VPS41-208ENST00000448833 USP50Q70EL3 339 aaPredicted RBP9.15□□□□□ -0.94
VPS41-208ENST00000448833 CNTROBQ8N137 903 aa9.15□□□□□ -0.94
VPS41-208ENST00000448833 MPNDQ8N594 471 aa9.15□□□□□ -0.94
VPS41-208ENST00000448833 GRAPLQ8TC17 118 aaPredicted RBP9.15□□□□□ -0.94
VPS41-208ENST00000448833 RTFDC1Q9BY42 306 aaPredicted RBP9.15□□□□□ -0.94
VPS41-208ENST00000448833 ZNRF3Q9ULT6 936 aa9.15□□□□□ -0.94
VPS41-208ENST00000448833 GJA3Q9Y6H8 435 aa9.15□□□□□ -0.94
VPS41-208ENST00000448833 SNED1Q8TER0 1413 aa9.14□□□□□ -0.95
VPS41-208ENST00000448833 ABCC4O15439 1325 aa9.14□□□□□ -0.95
VPS41-208ENST00000448833 PASKQ96RG2 1323 aa9.14□□□□□ -0.95
VPS41-208ENST00000448833 CDHR2Q9BYE9 1310 aa9.14□□□□□ -0.95
VPS41-208ENST00000448833 APAF1O14727 1248 aa9.14□□□□□ -0.95
VPS41-208ENST00000448833 TCERG1O14776 1098 aaKnown RBP9.14□□□□□ -0.95
VPS41-208ENST00000448833 ITGBL1O95965 494 aaPredicted RBP9.14□□□□□ -0.95
VPS41-208ENST00000448833 RIC3Q7Z5B4 369 aa9.14□□□□□ -0.95
VPS41-208ENST00000448833 MBIPQ9NS73 344 aa9.14□□□□□ -0.95
VPS41-208ENST00000448833 ADAMTSL1Q8N6G6 1762 aa9.14□□□□□ -0.95
VPS41-208ENST00000448833 TAF1P21675 1872 aa9.13□□□□□ -0.95
VPS41-208ENST00000448833 ZNF853P0CG23 659 aa9.13□□□□□ -0.95
VPS41-208ENST00000448833 HCLS1P14317 486 aaPredicted RBP9.13□□□□□ -0.95
VPS41-208ENST00000448833 KIAA2012Q0VF49 1180 aa9.13□□□□□ -0.95
VPS41-208ENST00000448833 SF3B3Q15393 1217 aaKnown RBP9.13□□□□□ -0.95
VPS41-208ENST00000448833 CCDC30Q5VVM6 783 aa9.13□□□□□ -0.95
VPS41-208ENST00000448833 CHRDL2Q6WN34 429 aa9.13□□□□□ -0.95
VPS41-208ENST00000448833 ISCA1Q9BUE6 129 aa9.13□□□□□ -0.95
VPS41-208ENST00000448833 ADARB2Q9NS39 739 aaKnown RBP9.13□□□□□ -0.95
VPS41-208ENST00000448833 DDX60Q8IY21 1712 aaKnown RBP9.13□□□□□ -0.95
VPS41-208ENST00000448833 CNTNAP1P78357 1384 aa9.12□□□□□ -0.95
VPS41-208ENST00000448833 POTEIP0CG38 1075 aa9.12□□□□□ -0.95
VPS41-208ENST00000448833 POTEJP0CG39 1038 aa9.12□□□□□ -0.95
VPS41-208ENST00000448833 HSPA1AP0DMV8 641 aaKnown RBP9.12□□□□□ -0.95
VPS41-208ENST00000448833 HSPA1BP0DMV9 641 aaKnown RBP9.12□□□□□ -0.95
VPS41-208ENST00000448833 AOC3Q16853 763 aa9.12□□□□□ -0.95
VPS41-208ENST00000448833 KRT24Q2M2I5 525 aa9.12□□□□□ -0.95
VPS41-208ENST00000448833 DEFB115Q30KQ5 88 aa9.12□□□□□ -0.95
VPS41-208ENST00000448833 CIAPIN1Q6FI81 312 aa9.12□□□□□ -0.95
VPS41-208ENST00000448833 C3orf67Q6ZVT6 689 aa9.12□□□□□ -0.95
VPS41-208ENST00000448833 ZBTB38Q8NAP3 1195 aaPredicted RBP9.12□□□□□ -0.95
VPS41-208ENST00000448833 CCDC191Q8NCU4 936 aa9.12□□□□□ -0.95
VPS41-208ENST00000448833 ZC3H15Q8WU90 426 aaKnown RBP9.12□□□□□ -0.95
VPS41-208ENST00000448833 AIDAQ96BJ3 306 aa9.12□□□□□ -0.95
VPS41-208ENST00000448833 FAM89AQ96GI7 184 aa9.12□□□□□ -0.95
VPS41-208ENST00000448833 EYA3Q99504 573 aa9.12□□□□□ -0.95
VPS41-208ENST00000448833 GPRC5DQ9NZD1 345 aa9.12□□□□□ -0.95
VPS41-208ENST00000448833 LRRC37AA6NMS7 1700 aa9.11□□□□□ -0.95
VPS41-208ENST00000448833 ATP5J2-PTCD1G3V325 749 aa9.11□□□□□ -0.95
VPS41-208ENST00000448833 H7C1D1 291 aa9.11□□□□□ -0.95
VPS41-208ENST00000448833 IRS4O14654 1257 aaPredicted RBP9.11□□□□□ -0.95
VPS41-208ENST00000448833 ECE1P42892 770 aa9.11□□□□□ -0.95
VPS41-208ENST00000448833 SCNN1DP51172 638 aa9.11□□□□□ -0.95
VPS41-208ENST00000448833 RPS8P62241 208 aaKnown RBP9.11□□□□□ -0.95
VPS41-208ENST00000448833 CXCL9Q07325 125 aa9.11□□□□□ -0.95
VPS41-208ENST00000448833 POLA2Q14181 598 aa9.11□□□□□ -0.95
VPS41-208ENST00000448833 CCDC27Q2M243 656 aa9.11□□□□□ -0.95
VPS41-208ENST00000448833 WASHC4Q2M389 1173 aa9.11□□□□□ -0.95
VPS41-208ENST00000448833 MAP1SQ66K74 1059 aaPredicted RBP9.11□□□□□ -0.95
VPS41-208ENST00000448833 BCL2L13Q9BXK5 485 aa9.11□□□□□ -0.95
VPS41-208ENST00000448833 STK31Q9BXU1 1019 aa9.11□□□□□ -0.95
VPS41-208ENST00000448833 MKRN1Q9UHC7 482 aaKnown RBP9.11□□□□□ -0.95
VPS41-208ENST00000448833 NSFL1CQ9UNZ2 370 aaKnown RBP9.11□□□□□ -0.95
VPS41-208ENST00000448833 MYH3P11055 1940 aa9.11□□□□□ -0.95
VPS41-208ENST00000448833 RASSF10A6NK89 507 aa9.1□□□□□ -0.95
VPS41-208ENST00000448833 G3V3G9 751 aa9.1□□□□□ -0.95
VPS41-208ENST00000448833 ABCB7O75027 752 aa9.1□□□□□ -0.95
VPS41-208ENST00000448833 EPS15P42566 896 aa9.1□□□□□ -0.95
VPS41-208ENST00000448833 MAP2K1Q02750 393 aaPredicted RBP9.1□□□□□ -0.95
VPS41-208ENST00000448833 NEXNQ0ZGT2 675 aa9.1□□□□□ -0.95
VPS41-208ENST00000448833 CCDC152Q4G0S7 254 aa9.1□□□□□ -0.95
VPS41-208ENST00000448833 DCAF8Q5TAQ9 597 aa9.1□□□□□ -0.95
VPS41-208ENST00000448833 TNS4Q8IZW8 715 aa9.1□□□□□ -0.95
VPS41-208ENST00000448833 ZC3H12CQ9C0D7 883 aaKnown RBP9.1□□□□□ -0.95
VPS41-208ENST00000448833 CWC25Q9NXE8 425 aaPredicted RBP9.1□□□□□ -0.95
VPS41-208ENST00000448833 ABT1Q9ULW3 272 aaKnown RBP9.1□□□□□ -0.95
VPS41-208ENST00000448833 C6orf229H3BNL8 230 aa9.09□□□□□ -0.95
VPS41-208ENST00000448833 ELL2O00472 640 aaPredicted RBP9.09□□□□□ -0.95
VPS41-208ENST00000448833 PDE8AO60658 829 aa9.09□□□□□ -0.95
VPS41-208ENST00000448833 PCCAP05165 728 aaPredicted RBP9.09□□□□□ -0.95
VPS41-208ENST00000448833 RPS12P25398 132 aaKnown RBP9.09□□□□□ -0.95
VPS41-208ENST00000448833 COL13A1Q5TAT6 717 aaPredicted RBP9.09□□□□□ -0.95
VPS41-208ENST00000448833 DPF2Q92785 391 aa9.09□□□□□ -0.95
VPS41-208ENST00000448833 BEGAINQ9BUH8 593 aa9.09□□□□□ -0.95
VPS41-208ENST00000448833 PGAP2Q9UHJ9 254 aa9.09□□□□□ -0.95
VPS41-208ENST00000448833 IL16Q14005 1332 aa9.08□□□□□ -0.96
VPS41-208ENST00000448833 POLR2AP24928 1970 aaKnown RBP9.08□□□□□ -0.96
VPS41-208ENST00000448833 COL4A5P29400 1685 aa9.08□□□□□ -0.96
VPS41-208ENST00000448833 ANP32CO43423 234 aa9.08□□□□□ -0.96
VPS41-208ENST00000448833 CTCFP49711 727 aaPredicted RBP9.08□□□□□ -0.96
VPS41-208ENST00000448833 VEGFBP49765 207 aa9.08□□□□□ -0.96
VPS41-208ENST00000448833 GMPSP49915 693 aaPredicted RBP9.08□□□□□ -0.96
VPS41-208ENST00000448833 KSR2Q6VAB6 950 aa9.08□□□□□ -0.96
VPS41-208ENST00000448833 CDC37L1Q7L3B6 337 aa9.08□□□□□ -0.96
VPS41-208ENST00000448833 MYD88Q99836 296 aa9.08□□□□□ -0.96
VPS41-208ENST00000448833 METTL22Q9BUU2 404 aaPredicted RBP9.08□□□□□ -0.96
VPS41-208ENST00000448833 PHAXQ9H814 394 aaKnown RBP9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms