RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 SLC4A2P04920 1241 aa22.51■■□□□ 1.19
HMGA1-205ENST00000447654 PDE1AP54750 535 aa22.51■■□□□ 1.19
HMGA1-205ENST00000447654 ERCC6LQ2NKX8 1250 aa22.51■■□□□ 1.19
HMGA1-205ENST00000447654 TTC31Q49AM3 519 aaPredicted RBP22.51■■□□□ 1.19
HMGA1-205ENST00000447654 ANO6Q4KMQ2 910 aa22.51■■□□□ 1.19
HMGA1-205ENST00000447654 ZBTB9Q96C00 473 aa22.51■■□□□ 1.19
HMGA1-205ENST00000447654 MSH6P52701 1360 aa22.51■■□□□ 1.19
HMGA1-205ENST00000447654 TRIM66O15016 1216 aa22.5■■□□□ 1.19
HMGA1-205ENST00000447654 CCDC144BQ3MJ40 725 aa22.5■■□□□ 1.19
HMGA1-205ENST00000447654 NBPF6Q5VWK0 638 aa22.5■■□□□ 1.19
HMGA1-205ENST00000447654 CEP85Q6P2H3 762 aa22.5■■□□□ 1.19
HMGA1-205ENST00000447654 CCDC144CPQ8IYA2 1237 aa22.5■■□□□ 1.19
HMGA1-205ENST00000447654 NBPF4Q96M43 638 aa22.5■■□□□ 1.19
HMGA1-205ENST00000447654 IP6K1Q92551 441 aa22.5■■□□□ 1.19
HMGA1-205ENST00000447654 SMC3Q9UQE7 1217 aa22.5■■□□□ 1.19
HMGA1-205ENST00000447654 USP27XA6NNY8 438 aa22.49■■□□□ 1.19
HMGA1-205ENST00000447654 GNAT3A8MTJ3 354 aa22.49■■□□□ 1.19
HMGA1-205ENST00000447654 ATP2B1P20020 1258 aa22.49■■□□□ 1.19
HMGA1-205ENST00000447654 GSDMDP57764 484 aa22.49■■□□□ 1.19
HMGA1-205ENST00000447654 SWT1Q5T5J6 900 aaKnown RBP22.49■■□□□ 1.19
HMGA1-205ENST00000447654 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP22.49■■□□□ 1.19
HMGA1-205ENST00000447654 ARHGAP29Q52LW3 1261 aa22.49■■□□□ 1.19
HMGA1-205ENST00000447654 SUGP1Q8IWZ8 645 aaKnown RBP22.49■■□□□ 1.19
HMGA1-205ENST00000447654 TNMDQ9H2S6 317 aa22.49■■□□□ 1.19
HMGA1-205ENST00000447654 DEF6Q9H4E7 631 aa22.49■■□□□ 1.19
HMGA1-205ENST00000447654 LRRC37A3O60309 1634 aa22.49■■□□□ 1.19
HMGA1-205ENST00000447654 HMMRO75330 724 aa22.48■■□□□ 1.19
HMGA1-205ENST00000447654 RPS6KA5O75582 802 aa22.48■■□□□ 1.19
HMGA1-205ENST00000447654 CEP83Q9Y592 693 aa22.48■■□□□ 1.19
HMGA1-205ENST00000447654 CCDC172P0C7W6 258 aa22.48■■□□□ 1.19
HMGA1-205ENST00000447654 CCZ1BP86790 482 aa22.48■■□□□ 1.19
HMGA1-205ENST00000447654 CCZ1P86791 482 aaPredicted RBP22.48■■□□□ 1.19
HMGA1-205ENST00000447654 ORC3Q9UBD5 711 aaPredicted RBP22.48■■□□□ 1.19
HMGA1-205ENST00000447654 LCMT1Q9UIC8 334 aa22.48■■□□□ 1.19
HMGA1-205ENST00000447654 PSDA5PKW4 1024 aaPredicted RBP22.47■■□□□ 1.19
HMGA1-205ENST00000447654 HSPA4P34932 840 aa22.47■■□□□ 1.19
HMGA1-205ENST00000447654 ACTN2P35609 894 aa22.47■■□□□ 1.19
HMGA1-205ENST00000447654 HSPA2P54652 639 aa22.47■■□□□ 1.19
HMGA1-205ENST00000447654 CCDC91Q7Z6B0 441 aa22.47■■□□□ 1.19
HMGA1-205ENST00000447654 LIMCH1Q9UPQ0 1083 aa22.47■■□□□ 1.19
HMGA1-205ENST00000447654 POLR3GO15318 223 aaPredicted RBP22.46■■□□□ 1.19
HMGA1-205ENST00000447654 ZNF165P49910 485 aa22.46■■□□□ 1.19
HMGA1-205ENST00000447654 ST5P78524 1137 aa22.46■■□□□ 1.19
HMGA1-205ENST00000447654 DNM1Q05193 864 aaKnown RBP22.46■■□□□ 1.19
HMGA1-205ENST00000447654 SNW1Q13573 536 aaKnown RBP22.46■■□□□ 1.19
HMGA1-205ENST00000447654 NOL8Q76FK4 1167 aaKnown RBP22.46■■□□□ 1.19
HMGA1-205ENST00000447654 LRRC59Q96AG4 307 aaKnown RBP22.46■■□□□ 1.19
HMGA1-205ENST00000447654 RGPD2P0DJD1 1756 aa22.46■■□□□ 1.19
HMGA1-205ENST00000447654 F6X3S4 739 aa22.46■■□□□ 1.19
HMGA1-205ENST00000447654 KIF1CO43896 1103 aaKnown RBP22.46■■□□□ 1.19
HMGA1-205ENST00000447654 CHMLP26374 656 aa22.46■■□□□ 1.19
HMGA1-205ENST00000447654 CCDC158Q5M9N0 1113 aa22.46■■□□□ 1.19
HMGA1-205ENST00000447654 UBXN4Q92575 508 aa22.46■■□□□ 1.19
HMGA1-205ENST00000447654 ANO2Q9NQ90 1003 aa22.46■■□□□ 1.19
HMGA1-205ENST00000447654 MTMR6Q9Y217 621 aa22.46■■□□□ 1.19
HMGA1-205ENST00000447654 OAS2P29728 719 aaKnown RBP22.45■■□□□ 1.18
HMGA1-205ENST00000447654 KRT85P78386 507 aa22.45■■□□□ 1.18
HMGA1-205ENST00000447654 PPM1EQ8WY54 764 aa22.45■■□□□ 1.18
HMGA1-205ENST00000447654 CLSTN2Q9H4D0 955 aa22.45■■□□□ 1.18
HMGA1-205ENST00000447654 MAP3K5Q99683 1374 aa22.45■■□□□ 1.18
HMGA1-205ENST00000447654 CHMP4CQ96CF2 233 aa22.45■■□□□ 1.18
HMGA1-205ENST00000447654 TTC14Q96N46 770 aa22.45■■□□□ 1.18
HMGA1-205ENST00000447654 MEIS3Q99687 375 aa22.45■■□□□ 1.18
HMGA1-205ENST00000447654 CCDC69A6NI79 296 aa22.44■■□□□ 1.18
HMGA1-205ENST00000447654 CASTP20810 708 aaKnown RBP22.44■■□□□ 1.18
HMGA1-205ENST00000447654 CEP120Q8N960 986 aa22.44■■□□□ 1.18
HMGA1-205ENST00000447654 MNS1Q8NEH6 495 aa22.44■■□□□ 1.18
HMGA1-205ENST00000447654 NECTIN2Q92692 538 aa22.44■■□□□ 1.18
HMGA1-205ENST00000447654 GYS2P54840 703 aa22.43■■□□□ 1.18
HMGA1-205ENST00000447654 SMC1AQ14683 1233 aaKnown RBP22.43■■□□□ 1.18
HMGA1-205ENST00000447654 PROSER2Q86WR7 435 aaPredicted RBP22.43■■□□□ 1.18
HMGA1-205ENST00000447654 UPF3BQ9BZI7 483 aaKnown RBP22.43■■□□□ 1.18
HMGA1-205ENST00000447654 IMPACTQ9P2X3 320 aa22.43■■□□□ 1.18
HMGA1-205ENST00000447654 CCP110O43303 1012 aa22.43■■□□□ 1.18
HMGA1-205ENST00000447654 GCP02774 474 aa22.43■■□□□ 1.18
HMGA1-205ENST00000447654 HAP1P54257 671 aaPredicted RBP22.43■■□□□ 1.18
HMGA1-205ENST00000447654 GSCP56915 257 aaPredicted RBP22.43■■□□□ 1.18
HMGA1-205ENST00000447654 REXO1L1PQ8IX06 675 aa22.43■■□□□ 1.18
HMGA1-205ENST00000447654 SALL3Q9BXA9 1300 aa22.43■■□□□ 1.18
HMGA1-205ENST00000447654 EFCAB8A8MWE9 144 aa22.42■■□□□ 1.18
HMGA1-205ENST00000447654 GOLGA6L19H0YKK7 550 aa22.42■■□□□ 1.18
HMGA1-205ENST00000447654 LEKR1Q6ZMV7 388 aa22.42■■□□□ 1.18
HMGA1-205ENST00000447654 PHLPP2Q6ZVD8 1323 aa22.42■■□□□ 1.18
HMGA1-205ENST00000447654 RPAINQ86UA6 219 aa22.42■■□□□ 1.18
HMGA1-205ENST00000447654 TMX1Q9H3N1 280 aa22.42■■□□□ 1.18
HMGA1-205ENST00000447654 NPHP3Q7Z494 1330 aa22.42■■□□□ 1.18
HMGA1-205ENST00000447654 CPP00450 1065 aa22.42■■□□□ 1.18
HMGA1-205ENST00000447654 DONSONQ9NYP3 566 aa22.42■■□□□ 1.18
HMGA1-205ENST00000447654 LMOD2Q6P5Q4 547 aa22.41■■□□□ 1.18
HMGA1-205ENST00000447654 BANK1Q8NDB2 785 aa22.41■■□□□ 1.18
HMGA1-205ENST00000447654 CERKQ8TCT0 537 aa22.41■■□□□ 1.18
HMGA1-205ENST00000447654 ZSCAN31Q96LW9 406 aaPredicted RBP22.41■■□□□ 1.18
HMGA1-205ENST00000447654 SCAND2PQ9GZW5 306 aaPredicted RBP22.41■■□□□ 1.18
HMGA1-205ENST00000447654 LGR6Q9HBX8 967 aa22.41■■□□□ 1.18
HMGA1-205ENST00000447654 CEP89Q96ST8 783 aa22.4■■□□□ 1.18
HMGA1-205ENST00000447654 OSBPL5Q9H0X9 879 aaPredicted RBP22.4■■□□□ 1.18
HMGA1-205ENST00000447654 EXOC6BQ9Y2D4 811 aa22.4■■□□□ 1.18
HMGA1-205ENST00000447654 AOX1Q06278 1338 aa22.4■■□□□ 1.18
HMGA1-205ENST00000447654 TBC1D8O95759 1140 aa22.4■■□□□ 1.18
HMGA1-205ENST00000447654 SH2B1Q9NRF2 756 aaPredicted RBP22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms