RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 USPL1Q5W0Q7 1092 aa9.89□□□□□ -0.83
CCDC39-201ENST00000442201 ARHGEF1Q92888 912 aaKnown RBP9.89□□□□□ -0.83
CCDC39-201ENST00000442201 STAP2Q9UGK3 403 aa9.89□□□□□ -0.83
CCDC39-201ENST00000442201 NAP1L2Q9ULW6 460 aaPredicted RBP9.89□□□□□ -0.83
CCDC39-201ENST00000442201 GSPT1P15170 499 aaKnown RBP9.89□□□□□ -0.83
CCDC39-201ENST00000442201 ADRA2BP18089 450 aa9.89□□□□□ -0.83
CCDC39-201ENST00000442201 RFC4P35249 363 aa9.89□□□□□ -0.83
CCDC39-201ENST00000442201 NUTM1Q86Y26 1132 aa9.89□□□□□ -0.83
CCDC39-201ENST00000442201 GTF2E1P29083 439 aaPredicted RBP9.88□□□□□ -0.83
CCDC39-201ENST00000442201 CTSWP56202 376 aa9.88□□□□□ -0.83
CCDC39-201ENST00000442201 SRP68Q9UHB9 627 aaKnown RBP9.88□□□□□ -0.83
CCDC39-201ENST00000442201 PHF14O94880 888 aa9.88□□□□□ -0.83
CCDC39-201ENST00000442201 IFIT2P09913 472 aaKnown RBP9.88□□□□□ -0.83
CCDC39-201ENST00000442201 IFIT5Q13325 482 aaKnown RBP9.88□□□□□ -0.83
CCDC39-201ENST00000442201 TTLL11Q8NHH1 800 aa9.88□□□□□ -0.83
CCDC39-201ENST00000442201 IPO4Q8TEX9 1081 aaKnown RBP9.88□□□□□ -0.83
CCDC39-201ENST00000442201 BCL2L12Q9HB09 334 aa9.88□□□□□ -0.83
CCDC39-201ENST00000442201 AOX1Q06278 1338 aa9.88□□□□□ -0.83
CCDC39-201ENST00000442201 NTSR2O95665 410 aa9.88□□□□□ -0.83
CCDC39-201ENST00000442201 AMIGO3Q86WK7 504 aa9.88□□□□□ -0.83
CCDC39-201ENST00000442201 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.87□□□□□ -0.83
CCDC39-201ENST00000442201 BICDL1Q6ZP65 573 aa9.87□□□□□ -0.83
CCDC39-201ENST00000442201 AACSQ86V21 672 aa9.87□□□□□ -0.83
CCDC39-201ENST00000442201 PROM2Q8N271 834 aa9.87□□□□□ -0.83
CCDC39-201ENST00000442201 CCDC85AQ96PX6 553 aaPredicted RBP9.87□□□□□ -0.83
CCDC39-201ENST00000442201 USP42Q9H9J4 1324 aaKnown RBP9.87□□□□□ -0.83
CCDC39-201ENST00000442201 NUP98P52948 1817 aa9.87□□□□□ -0.83
CCDC39-201ENST00000442201 C4BP0C0L5 1744 aa9.87□□□□□ -0.83
CCDC39-201ENST00000442201 EYA2O00167 538 aa9.87□□□□□ -0.83
CCDC39-201ENST00000442201 IL15P40933 162 aaPredicted RBP9.87□□□□□ -0.83
CCDC39-201ENST00000442201 TSHZ3Q63HK5 1081 aa9.87□□□□□ -0.83
CCDC39-201ENST00000442201 GPATCH3Q96I76 525 aa9.87□□□□□ -0.83
CCDC39-201ENST00000442201 SETDB2Q96T68 719 aa9.87□□□□□ -0.83
CCDC39-201ENST00000442201 FBXO3Q9UK99 471 aa9.87□□□□□ -0.83
CCDC39-201ENST00000442201 ANKRD36CQ5JPF3 1778 aa9.87□□□□□ -0.83
CCDC39-201ENST00000442201 CDC45O75419 566 aa9.87□□□□□ -0.83
CCDC39-201ENST00000442201 CIAO1O76071 339 aa9.87□□□□□ -0.83
CCDC39-201ENST00000442201 HCLS1P14317 486 aaPredicted RBP9.87□□□□□ -0.83
CCDC39-201ENST00000442201 TBC1D9BQ66K14 1250 aa9.87□□□□□ -0.83
CCDC39-201ENST00000442201 PDCL3Q9H2J4 239 aa9.87□□□□□ -0.83
CCDC39-201ENST00000442201 UPF2Q9HAU5 1272 aaKnown RBP9.87□□□□□ -0.83
CCDC39-201ENST00000442201 ANKRD18BA2A2Z9 1011 aa9.86□□□□□ -0.83
CCDC39-201ENST00000442201 SDSP20132 328 aa9.86□□□□□ -0.83
CCDC39-201ENST00000442201 SSFA2P28290 1259 aa9.86□□□□□ -0.83
CCDC39-201ENST00000442201 TFCP2Q12800 502 aa9.86□□□□□ -0.83
CCDC39-201ENST00000442201 EAF2Q96CJ1 260 aaPredicted RBP9.86□□□□□ -0.83
CCDC39-201ENST00000442201 ZNF594Q96JF6 807 aaPredicted RBP9.86□□□□□ -0.83
CCDC39-201ENST00000442201 GREM2Q9H772 168 aa9.86□□□□□ -0.83
CCDC39-201ENST00000442201 TTC41PQ6P2S7 1318 aa9.86□□□□□ -0.83
CCDC39-201ENST00000442201 EP400Q96L91 3159 aa9.86□□□□□ -0.83
CCDC39-201ENST00000442201 ITGA6P23229 1130 aa9.86□□□□□ -0.83
CCDC39-201ENST00000442201 NYXQ9GZU5 481 aa9.86□□□□□ -0.83
CCDC39-201ENST00000442201 ECHDC1Q9NTX5 307 aa9.86□□□□□ -0.83
CCDC39-201ENST00000442201 ERC2O15083 957 aa9.85□□□□□ -0.83
CCDC39-201ENST00000442201 SEC24BO95487 1268 aa9.85□□□□□ -0.83
CCDC39-201ENST00000442201 ATG9AQ7Z3C6 839 aa9.85□□□□□ -0.83
CCDC39-201ENST00000442201 GLRX3O76003 335 aaKnown RBP9.85□□□□□ -0.83
CCDC39-201ENST00000442201 LRRC24Q50LG9 513 aa9.85□□□□□ -0.83
CCDC39-201ENST00000442201 TNNI3KQ59H18 835 aa9.85□□□□□ -0.83
CCDC39-201ENST00000442201 CCDC8Q9H0W5 538 aaPredicted RBP9.85□□□□□ -0.83
CCDC39-201ENST00000442201 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.85□□□□□ -0.83
CCDC39-201ENST00000442201 FPGT-TNNI3KV9GXZ4 949 aa9.85□□□□□ -0.83
CCDC39-201ENST00000442201 CLCN1P35523 988 aa9.85□□□□□ -0.83
CCDC39-201ENST00000442201 CCDC152Q4G0S7 254 aa9.85□□□□□ -0.83
CCDC39-201ENST00000442201 TBC1D9Q6ZT07 1266 aa9.85□□□□□ -0.83
CCDC39-201ENST00000442201 NBPF5PQ86XG9 351 aaPredicted RBP9.85□□□□□ -0.83
CCDC39-201ENST00000442201 PI4K2BQ8TCG2 481 aa9.85□□□□□ -0.83
CCDC39-201ENST00000442201 CEP126Q9P2H0 1117 aa9.85□□□□□ -0.83
CCDC39-201ENST00000442201 TAF1LQ8IZX4 1826 aa9.84□□□□□ -0.83
CCDC39-201ENST00000442201 TRIM6-TRIM34B2RNG4 842 aa9.84□□□□□ -0.83
CCDC39-201ENST00000442201 CASC1Q6TDU7 716 aa9.84□□□□□ -0.83
CCDC39-201ENST00000442201 TPTE2Q6XPS3 522 aa9.84□□□□□ -0.83
CCDC39-201ENST00000442201 LDHAL6AQ6ZMR3 332 aa9.84□□□□□ -0.83
CCDC39-201ENST00000442201 PUS3Q9BZE2 481 aaKnown RBP9.84□□□□□ -0.83
CCDC39-201ENST00000442201 GPR108Q9NPR9 543 aa9.84□□□□□ -0.83
CCDC39-201ENST00000442201 BCORQ6W2J9 1755 aa9.84□□□□□ -0.83
CCDC39-201ENST00000442201 SCN7AQ01118 1682 aa9.84□□□□□ -0.83
CCDC39-201ENST00000442201 ERFEQ4G0M1 354 aa9.84□□□□□ -0.83
CCDC39-201ENST00000442201 TFCP2L1Q9NZI6 479 aa9.84□□□□□ -0.83
CCDC39-201ENST00000442201 MFAP1P55081 439 aaKnown RBP9.83□□□□□ -0.84
CCDC39-201ENST00000442201 BBXQ8WY36 941 aaPredicted RBP9.83□□□□□ -0.84
CCDC39-201ENST00000442201 RILPL2Q969X0 211 aa9.83□□□□□ -0.84
CCDC39-201ENST00000442201 CNNM1Q9NRU3 951 aa9.83□□□□□ -0.84
CCDC39-201ENST00000442201 SLC10A5Q5PT55 438 aa9.83□□□□□ -0.84
CCDC39-201ENST00000442201 TLR7Q9NYK1 1049 aaKnown RBP9.83□□□□□ -0.84
CCDC39-201ENST00000442201 RTL9Q8NET4 1388 aa9.83□□□□□ -0.84
CCDC39-201ENST00000442201 NPHP1O15259 732 aa9.83□□□□□ -0.84
CCDC39-201ENST00000442201 NFIXQ14938 502 aa9.83□□□□□ -0.84
CCDC39-201ENST00000442201 CARMIL3Q8ND23 1372 aa9.82□□□□□ -0.84
CCDC39-201ENST00000442201 GYS1P13807 737 aa9.82□□□□□ -0.84
CCDC39-201ENST00000442201 DBNLQ9UJU6 430 aaKnown RBP9.82□□□□□ -0.84
CCDC39-201ENST00000442201 AKAP2Q9Y2D5 859 aa9.82□□□□□ -0.84
CCDC39-201ENST00000442201 BRD2P25440 801 aaKnown RBP9.82□□□□□ -0.84
CCDC39-201ENST00000442201 SF3B3Q15393 1217 aaKnown RBP9.82□□□□□ -0.84
CCDC39-201ENST00000442201 METTL24Q5JXM2 366 aa9.82□□□□□ -0.84
CCDC39-201ENST00000442201 CNTROBQ8N137 903 aa9.82□□□□□ -0.84
CCDC39-201ENST00000442201 AKT1S1Q96B36 256 aa9.82□□□□□ -0.84
CCDC39-201ENST00000442201 NEUROD6Q96NK8 337 aa9.82□□□□□ -0.84
CCDC39-201ENST00000442201 RIPOR2Q9Y4F9 1068 aa9.82□□□□□ -0.84
CCDC39-201ENST00000442201 ZNF827Q17R98 1081 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms