RNA–Protein interactions for RNA: ENST00000440552.5

PTPRN-205, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 4

Gene PTPRN, Length 579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-205ENST00000440552 TMC4Q7Z404 712 aa18.62■□□□□ 0.57
PTPRN-205ENST00000440552 SAPCD2Q86UD0 394 aa18.62■□□□□ 0.57
PTPRN-205ENST00000440552 LAMB2P55268 1798 aa18.61■□□□□ 0.57
PTPRN-205ENST00000440552 CA12O43570 354 aa18.61■□□□□ 0.57
PTPRN-205ENST00000440552 RIPK4P57078 832 aa18.61■□□□□ 0.57
PTPRN-205ENST00000440552 LMOD3Q0VAK6 560 aa18.61■□□□□ 0.57
PTPRN-205ENST00000440552 TCIRG1Q13488 830 aa18.61■□□□□ 0.57
PTPRN-205ENST00000440552 DDX46Q7L014 1031 aaKnown RBP18.61■□□□□ 0.57
PTPRN-205ENST00000440552 COPS6Q7L5N1 327 aa18.61■□□□□ 0.57
PTPRN-205ENST00000440552 SH3TC1Q8TE82 1336 aa18.6■□□□□ 0.57
PTPRN-205ENST00000440552 CELF2O95319 508 aaKnown RBP18.6■□□□□ 0.57
PTPRN-205ENST00000440552 ANXA1P04083 346 aa18.6■□□□□ 0.57
PTPRN-205ENST00000440552 GRAPQ13588 217 aa18.6■□□□□ 0.57
PTPRN-205ENST00000440552 GRAPLQ8TC17 118 aaPredicted RBP18.6■□□□□ 0.57
PTPRN-205ENST00000440552 HCLS1P14317 486 aaPredicted RBP18.59■□□□□ 0.57
PTPRN-205ENST00000440552 GRM1Q13255 1194 aa18.59■□□□□ 0.57
PTPRN-205ENST00000440552 XAGE3Q8WTP9 111 aa18.59■□□□□ 0.57
PTPRN-205ENST00000440552 BCL2L13Q9BXK5 485 aa18.59■□□□□ 0.57
PTPRN-205ENST00000440552 GLIS2Q9BZE0 524 aaPredicted RBP18.59■□□□□ 0.57
PTPRN-205ENST00000440552 TRMT112Q9UI30 125 aaKnown RBP18.59■□□□□ 0.57
PTPRN-205ENST00000440552 AOC2O75106 756 aa18.58■□□□□ 0.56
PTPRN-205ENST00000440552 TMPOP42166 694 aaKnown RBP18.58■□□□□ 0.56
PTPRN-205ENST00000440552 HIRAP54198 1017 aaPredicted RBP18.58■□□□□ 0.56
PTPRN-205ENST00000440552 CDC37L1Q7L3B6 337 aa18.58■□□□□ 0.56
PTPRN-205ENST00000440552 RAD17O75943 681 aa18.57■□□□□ 0.56
PTPRN-205ENST00000440552 BRPF1P55201 1214 aaPredicted RBP18.57■□□□□ 0.56
PTPRN-205ENST00000440552 DUOX1Q9NRD9 1551 aa18.56■□□□□ 0.56
PTPRN-205ENST00000440552 YDJCA8MPS7 323 aa18.56■□□□□ 0.56
PTPRN-205ENST00000440552 RGS19P49795 217 aa18.56■□□□□ 0.56
PTPRN-205ENST00000440552 AIMP1Q12904 312 aaKnown RBP18.56■□□□□ 0.56
PTPRN-205ENST00000440552 TRPM4Q8TD43 1214 aa18.56■□□□□ 0.56
PTPRN-205ENST00000440552 DPF2Q92785 391 aa18.56■□□□□ 0.56
PTPRN-205ENST00000440552 CNOT7Q9UIV1 285 aaKnown RBP18.56■□□□□ 0.56
PTPRN-205ENST00000440552 LRRC37AA6NMS7 1700 aa18.56■□□□□ 0.56
PTPRN-205ENST00000440552 H7C1D1 291 aa18.55■□□□□ 0.56
PTPRN-205ENST00000440552 CHL1O00533 1208 aa18.55■□□□□ 0.56
PTPRN-205ENST00000440552 RALBP1Q15311 655 aa18.54■□□□□ 0.56
PTPRN-205ENST00000440552 SF3B3Q15393 1217 aaKnown RBP18.54■□□□□ 0.56
PTPRN-205ENST00000440552 TAF1P21675 1872 aa18.54■□□□□ 0.56
PTPRN-205ENST00000440552 CCDC85CA6NKD9 419 aa18.53■□□□□ 0.56
PTPRN-205ENST00000440552 HOXB7P09629 217 aa18.53■□□□□ 0.56
PTPRN-205ENST00000440552 NOGQ13253 232 aa18.53■□□□□ 0.56
PTPRN-205ENST00000440552 FAM161AQ3B820 660 aa18.53■□□□□ 0.56
PTPRN-205ENST00000440552 MICALL2Q8IY33 904 aa18.53■□□□□ 0.56
PTPRN-205ENST00000440552 PLBD2Q8NHP8 589 aa18.53■□□□□ 0.56
PTPRN-205ENST00000440552 NECTIN2Q92692 538 aa18.53■□□□□ 0.56
PTPRN-205ENST00000440552 ISCA1Q9BUE6 129 aa18.53■□□□□ 0.56
PTPRN-205ENST00000440552 TSKSQ9UJT2 592 aa18.52■□□□□ 0.56
PTPRN-205ENST00000440552 DDX60Q8IY21 1712 aaKnown RBP18.52■□□□□ 0.55
PTPRN-205ENST00000440552 CASP8AP2Q9UKL3 1982 aa18.51■□□□□ 0.55
PTPRN-205ENST00000440552 SHTN1A0MZ66 631 aa18.51■□□□□ 0.55
PTPRN-205ENST00000440552 RPS12P25398 132 aaKnown RBP18.51■□□□□ 0.55
PTPRN-205ENST00000440552 WASHC4Q2M389 1173 aa18.51■□□□□ 0.55
PTPRN-205ENST00000440552 ANKRD13DQ6ZTN6 518 aa18.51■□□□□ 0.55
PTPRN-205ENST00000440552 USP48Q86UV5 1035 aa18.51■□□□□ 0.55
PTPRN-205ENST00000440552 ZNF408Q9H9D4 720 aa18.51■□□□□ 0.55
PTPRN-205ENST00000440552 CHPF2Q9P2E5 772 aa18.51■□□□□ 0.55
PTPRN-205ENST00000440552 PSMD14O00487 310 aa18.5■□□□□ 0.55
PTPRN-205ENST00000440552 SLC34A2O95436 690 aa18.5■□□□□ 0.55
PTPRN-205ENST00000440552 MLLT1Q03111 559 aaPredicted RBP18.5■□□□□ 0.55
PTPRN-205ENST00000440552 TRIM28Q13263 835 aaKnown RBP18.5■□□□□ 0.55
PTPRN-205ENST00000440552 KRT24Q2M2I5 525 aa18.5■□□□□ 0.55
PTPRN-205ENST00000440552 CELF1Q92879 486 aaKnown RBP18.5■□□□□ 0.55
PTPRN-205ENST00000440552 NSFL1CQ9UNZ2 370 aaKnown RBP18.5■□□□□ 0.55
PTPRN-205ENST00000440552 ZBTB12Q9Y330 459 aaPredicted RBP18.5■□□□□ 0.55
PTPRN-205ENST00000440552 HUNKP57058 714 aa18.49■□□□□ 0.55
PTPRN-205ENST00000440552 HDGFL1Q5TGJ6 251 aa18.49■□□□□ 0.55
PTPRN-205ENST00000440552 MCOLN1Q9GZU1 580 aa18.49■□□□□ 0.55
PTPRN-205ENST00000440552 DBF4Q9UBU7 674 aaPredicted RBP18.49■□□□□ 0.55
PTPRN-205ENST00000440552 POLR2AP24928 1970 aaKnown RBP18.48■□□□□ 0.55
PTPRN-205ENST00000440552 SAMD7Q7Z3H4 446 aa18.48■□□□□ 0.55
PTPRN-205ENST00000440552 FAM89AQ96GI7 184 aa18.48■□□□□ 0.55
PTPRN-205ENST00000440552 EYA3Q99504 573 aa18.48■□□□□ 0.55
PTPRN-205ENST00000440552 DBNDD1Q9H9R9 158 aa18.48■□□□□ 0.55
PTPRN-205ENST00000440552 POLLQ9UGP5 575 aa18.48■□□□□ 0.55
PTPRN-205ENST00000440552 TRIM35Q9UPQ4 493 aa18.48■□□□□ 0.55
PTPRN-205ENST00000440552 C6orf229H3BNL8 230 aa18.47■□□□□ 0.55
PTPRN-205ENST00000440552 GPSM2P81274 684 aa18.47■□□□□ 0.55
PTPRN-205ENST00000440552 KRT26Q7Z3Y9 468 aa18.47■□□□□ 0.55
PTPRN-205ENST00000440552 HYPKQ9NX55 129 aa18.47■□□□□ 0.55
PTPRN-205ENST00000440552 ECE2O60344 883 aa18.46■□□□□ 0.55
PTPRN-205ENST00000440552 RPS8P62241 208 aaKnown RBP18.46■□□□□ 0.55
PTPRN-205ENST00000440552 TBC1D10BQ4KMP7 808 aaPredicted RBP18.46■□□□□ 0.55
PTPRN-205ENST00000440552 RGMBQ6NW40 437 aa18.46■□□□□ 0.55
PTPRN-205ENST00000440552 RUNDC1Q96C34 613 aa18.46■□□□□ 0.55
PTPRN-205ENST00000440552 ZIC5Q96T25 663 aa18.46■□□□□ 0.55
PTPRN-205ENST00000440552 GBA2Q9HCG7 927 aaPredicted RBP18.46■□□□□ 0.55
PTPRN-205ENST00000440552 PDE4DIPQ5VU43 2346 aa18.46■□□□□ 0.55
PTPRN-205ENST00000440552 RTL9Q8NET4 1388 aa18.45■□□□□ 0.54
PTPRN-205ENST00000440552 FAM155AB1AL88 458 aaPredicted RBP18.45■□□□□ 0.54
PTPRN-205ENST00000440552 ATP5J2-PTCD1G3V325 749 aa18.45■□□□□ 0.54
PTPRN-205ENST00000440552 IRS4O14654 1257 aaPredicted RBP18.45■□□□□ 0.54
PTPRN-205ENST00000440552 RIMBP2O15034 1052 aa18.45■□□□□ 0.54
PTPRN-205ENST00000440552 EGFRP00533 1210 aa18.45■□□□□ 0.54
PTPRN-205ENST00000440552 NEUROD2Q15784 382 aa18.45■□□□□ 0.54
PTPRN-205ENST00000440552 C2orf69Q8N8R5 385 aa18.45■□□□□ 0.54
PTPRN-205ENST00000440552 TBC1D16Q8TBP0 767 aa18.45■□□□□ 0.54
PTPRN-205ENST00000440552 CCDC102AQ96A19 550 aa18.45■□□□□ 0.54
PTPRN-205ENST00000440552 DCPSQ96C86 337 aaKnown RBP18.45■□□□□ 0.54
PTPRN-205ENST00000440552 SAGE1Q9NXZ1 904 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms