RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 TBC1D2BQ9UPU7 963 aa17■□□□□ 0.31
LIMD1-202ENST00000440097 THRAP3Q9Y2W1 955 aaKnown RBP17■□□□□ 0.31
LIMD1-202ENST00000440097 NDUFB9Q9Y6M9 179 aa17■□□□□ 0.31
LIMD1-202ENST00000440097 HSPA4P34932 840 aa17■□□□□ 0.31
LIMD1-202ENST00000440097 ISCA1Q9BUE6 129 aa17■□□□□ 0.31
LIMD1-202ENST00000440097 MAP3K15Q6ZN16 1313 aa17■□□□□ 0.31
LIMD1-202ENST00000440097 COL15A1P39059 1388 aa16.99■□□□□ 0.31
LIMD1-202ENST00000440097 HLFQ16534 295 aa16.99■□□□□ 0.31
LIMD1-202ENST00000440097 ZGPATQ8N5A5 531 aaKnown RBP16.99■□□□□ 0.31
LIMD1-202ENST00000440097 FAM227BQ96M60 508 aa16.99■□□□□ 0.31
LIMD1-202ENST00000440097 PKP1Q13835 747 aa16.99■□□□□ 0.31
LIMD1-202ENST00000440097 LSG1Q9H089 658 aaKnown RBP16.99■□□□□ 0.31
LIMD1-202ENST00000440097 R3HCC1Q9Y3T6 440 aaKnown RBP16.99■□□□□ 0.31
LIMD1-202ENST00000440097 HIP1O00291 1037 aa16.98■□□□□ 0.31
LIMD1-202ENST00000440097 GIGYF2Q6Y7W6 1299 aaKnown RBP16.98■□□□□ 0.31
LIMD1-202ENST00000440097 NGLY1Q96IV0 654 aa16.98■□□□□ 0.31
LIMD1-202ENST00000440097 NCLP19338 710 aaKnown RBP16.98■□□□□ 0.31
LIMD1-202ENST00000440097 NMIQ13287 307 aaPredicted RBP16.98■□□□□ 0.31
LIMD1-202ENST00000440097 LRRC24Q50LG9 513 aa16.98■□□□□ 0.31
LIMD1-202ENST00000440097 MCTP1Q6DN14 999 aa16.98■□□□□ 0.31
LIMD1-202ENST00000440097 PLCH1Q4KWH8 1693 aa16.98■□□□□ 0.31
LIMD1-202ENST00000440097 ATP6V1AP38606 617 aa16.97■□□□□ 0.31
LIMD1-202ENST00000440097 ZNF445P59923 1031 aa16.97■□□□□ 0.31
LIMD1-202ENST00000440097 TIMM10P62072 90 aa16.97■□□□□ 0.31
LIMD1-202ENST00000440097 DZIP3Q86Y13 1208 aaKnown RBP16.97■□□□□ 0.31
LIMD1-202ENST00000440097 NUP188Q5SRE5 1749 aa16.97■□□□□ 0.31
LIMD1-202ENST00000440097 HSPA1LP34931 641 aa16.97■□□□□ 0.31
LIMD1-202ENST00000440097 IL15P40933 162 aaPredicted RBP16.97■□□□□ 0.31
LIMD1-202ENST00000440097 MCM2P49736 904 aa16.97■□□□□ 0.31
LIMD1-202ENST00000440097 TERF1P54274 439 aa16.97■□□□□ 0.31
LIMD1-202ENST00000440097 CAVIN1Q6NZI2 390 aaKnown RBP16.97■□□□□ 0.31
LIMD1-202ENST00000440097 MARCH10Q8NA82 808 aaPredicted RBP16.97■□□□□ 0.31
LIMD1-202ENST00000440097 TMX3Q96JJ7 454 aa16.97■□□□□ 0.31
LIMD1-202ENST00000440097 SPATA31A5Q5VU36 1347 aa16.96■□□□□ 0.31
LIMD1-202ENST00000440097 SPATA31A7Q8IWB4 1347 aa16.96■□□□□ 0.31
LIMD1-202ENST00000440097 PTH1RQ03431 593 aa16.96■□□□□ 0.31
LIMD1-202ENST00000440097 FAM98CQ17RN3 349 aaKnown RBP16.96■□□□□ 0.31
LIMD1-202ENST00000440097 SYNE4Q8N205 404 aa16.96■□□□□ 0.31
LIMD1-202ENST00000440097 EYA2O00167 538 aa16.96■□□□□ 0.31
LIMD1-202ENST00000440097 EPB41L2O43491 1005 aaKnown RBP16.96■□□□□ 0.31
LIMD1-202ENST00000440097 ZSCAN23Q3MJ62 389 aa16.96■□□□□ 0.31
LIMD1-202ENST00000440097 HSP90AB3PQ58FF7 597 aa16.96■□□□□ 0.31
LIMD1-202ENST00000440097 PRPF40BQ6NWY9 871 aaKnown RBP16.96■□□□□ 0.31
LIMD1-202ENST00000440097 ZBTB38Q8NAP3 1195 aaPredicted RBP16.96■□□□□ 0.31
LIMD1-202ENST00000440097 CERKQ8TCT0 537 aa16.96■□□□□ 0.31
LIMD1-202ENST00000440097 FAM13BQ9NYF5 915 aa16.96■□□□□ 0.31
LIMD1-202ENST00000440097 SNX14Q9Y5W7 946 aa16.96■□□□□ 0.31
LIMD1-202ENST00000440097 PCCAP05165 728 aaPredicted RBP16.95■□□□□ 0.3
LIMD1-202ENST00000440097 ATP5JP18859 108 aa16.95■□□□□ 0.3
LIMD1-202ENST00000440097 ATG9AQ7Z3C6 839 aa16.95■□□□□ 0.3
LIMD1-202ENST00000440097 PUS3Q9BZE2 481 aaKnown RBP16.95■□□□□ 0.3
LIMD1-202ENST00000440097 TRMT112Q9UI30 125 aaKnown RBP16.95■□□□□ 0.3
LIMD1-202ENST00000440097 FAM177BA6PVY3 158 aa16.95■□□□□ 0.3
LIMD1-202ENST00000440097 IFIT5Q13325 482 aaKnown RBP16.95■□□□□ 0.3
LIMD1-202ENST00000440097 DDX46Q7L014 1031 aaKnown RBP16.95■□□□□ 0.3
LIMD1-202ENST00000440097 RASEFQ8IZ41 740 aa16.95■□□□□ 0.3
LIMD1-202ENST00000440097 RBSNQ9H1K0 784 aa16.95■□□□□ 0.3
LIMD1-202ENST00000440097 A0A0D9SFI3 127 aa16.94■□□□□ 0.3
LIMD1-202ENST00000440097 CEP126Q9P2H0 1117 aa16.94■□□□□ 0.3
LIMD1-202ENST00000440097 TRIM28Q13263 835 aaKnown RBP16.94■□□□□ 0.3
LIMD1-202ENST00000440097 HS1BP3Q53T59 392 aa16.94■□□□□ 0.3
LIMD1-202ENST00000440097 GORABQ5T7V8 394 aa16.94■□□□□ 0.3
LIMD1-202ENST00000440097 NLRP10Q86W26 655 aa16.94■□□□□ 0.3
LIMD1-202ENST00000440097 NOL7Q9UMY1 257 aaKnown RBP16.94■□□□□ 0.3
LIMD1-202ENST00000440097 ZKSCAN1P17029 563 aaPredicted RBP16.94■□□□□ 0.3
LIMD1-202ENST00000440097 CASTP20810 708 aaKnown RBP16.94■□□□□ 0.3
LIMD1-202ENST00000440097 CWC22Q9HCG8 908 aaKnown RBP16.94■□□□□ 0.3
LIMD1-202ENST00000440097 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.94■□□□□ 0.3
LIMD1-202ENST00000440097 CCDC171Q6TFL3 1326 aa16.93■□□□□ 0.3
LIMD1-202ENST00000440097 IL6STP40189 918 aaPredicted RBP16.93■□□□□ 0.3
LIMD1-202ENST00000440097 NUCB2P80303 420 aa16.93■□□□□ 0.3
LIMD1-202ENST00000440097 LMBRD1Q9NUN5 540 aa16.93■□□□□ 0.3
LIMD1-202ENST00000440097 DOT1LQ8TEK3 1739 aa16.93■□□□□ 0.3
LIMD1-202ENST00000440097 LOC102724428A0A0B4J2F2 783 aa16.93■□□□□ 0.3
LIMD1-202ENST00000440097 SIK1P57059 783 aa16.93■□□□□ 0.3
LIMD1-202ENST00000440097 MEX3CQ5U5Q3 659 aaKnown RBP16.93■□□□□ 0.3
LIMD1-202ENST00000440097 LARP6Q9BRS8 491 aaKnown RBP16.93■□□□□ 0.3
LIMD1-202ENST00000440097 TJP1Q07157 1748 aa16.92■□□□□ 0.3
LIMD1-202ENST00000440097 A0A1B0GUL7 405 aa16.92■□□□□ 0.3
LIMD1-202ENST00000440097 ZNF500O60304 480 aaPredicted RBP16.92■□□□□ 0.3
LIMD1-202ENST00000440097 CHAMP1Q96JM3 812 aa16.92■□□□□ 0.3
LIMD1-202ENST00000440097 JAKMIP1Q96N16 626 aaKnown RBP16.92■□□□□ 0.3
LIMD1-202ENST00000440097 GOLIM4O00461 696 aa16.92■□□□□ 0.3
LIMD1-202ENST00000440097 KCNQ2O43526 872 aa16.92■□□□□ 0.3
LIMD1-202ENST00000440097 CPA1P15085 419 aa16.92■□□□□ 0.3
LIMD1-202ENST00000440097 CRKLP46109 303 aaKnown RBP16.92■□□□□ 0.3
LIMD1-202ENST00000440097 FOXD4L5Q5VV16 416 aaPredicted RBP16.92■□□□□ 0.3
LIMD1-202ENST00000440097 FOXD4L4Q8WXT5 416 aaPredicted RBP16.92■□□□□ 0.3
LIMD1-202ENST00000440097 PDLIM2Q96JY6 352 aa16.92■□□□□ 0.3
LIMD1-202ENST00000440097 RBM8AQ9Y5S9 174 aaKnown RBP16.92■□□□□ 0.3
LIMD1-202ENST00000440097 UTRNP46939 3433 aa16.91■□□□□ 0.3
LIMD1-202ENST00000440097 IRS4O14654 1257 aaPredicted RBP16.91■□□□□ 0.3
LIMD1-202ENST00000440097 CCDC87Q9NVE4 849 aa16.91■□□□□ 0.3
LIMD1-202ENST00000440097 UQCRHLA0A096LP55 91 aa16.91■□□□□ 0.3
LIMD1-202ENST00000440097 UQCRHP07919 91 aa16.91■□□□□ 0.3
LIMD1-202ENST00000440097 LRP6O75581 1613 aa16.91■□□□□ 0.3
LIMD1-202ENST00000440097 BARGINQ6ZT62 677 aa16.9■□□□□ 0.3
LIMD1-202ENST00000440097 HAUS7Q99871 368 aa16.9■□□□□ 0.3
LIMD1-202ENST00000440097 CIAO1O76071 339 aa16.9■□□□□ 0.3
LIMD1-202ENST00000440097 CHGBP05060 677 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms