RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 GCC1Q96CN9 775 aa25.74■■□□□ 1.71
CHD3-204ENST00000439235 NRXN2Q9P2S2 1712 aa25.74■■□□□ 1.71
CHD3-204ENST00000439235 CCDC152Q4G0S7 254 aa25.73■■□□□ 1.71
CHD3-204ENST00000439235 NLRP3Q96P20 1036 aa25.73■■□□□ 1.71
CHD3-204ENST00000439235 CCDC57Q2TAC2 916 aa25.72■■□□□ 1.71
CHD3-204ENST00000439235 MTFR1LQ9H019 292 aa25.72■■□□□ 1.71
CHD3-204ENST00000439235 MYH3P11055 1940 aa25.72■■□□□ 1.71
CHD3-204ENST00000439235 RTL9Q8NET4 1388 aa25.71■■□□□ 1.71
CHD3-204ENST00000439235 IFIT5Q13325 482 aaKnown RBP25.71■■□□□ 1.71
CHD3-204ENST00000439235 SF3B3Q15393 1217 aaKnown RBP25.71■■□□□ 1.71
CHD3-204ENST00000439235 FAM161AQ3B820 660 aa25.71■■□□□ 1.71
CHD3-204ENST00000439235 SMC5Q8IY18 1101 aa25.71■■□□□ 1.71
CHD3-204ENST00000439235 DCTPP1Q9H773 170 aa25.71■■□□□ 1.71
CHD3-204ENST00000439235 HSP90AB4PQ58FF6 505 aa25.7■■□□□ 1.7
CHD3-204ENST00000439235 ANKRD18BA2A2Z9 1011 aa25.69■■□□□ 1.7
CHD3-204ENST00000439235 RFX5P48382 616 aaPredicted RBP25.69■■□□□ 1.7
CHD3-204ENST00000439235 CCDC24Q8N4L8 307 aa25.69■■□□□ 1.7
CHD3-204ENST00000439235 CCDC85AQ96PX6 553 aaPredicted RBP25.69■■□□□ 1.7
CHD3-204ENST00000439235 GREM2Q9H772 168 aa25.69■■□□□ 1.7
CHD3-204ENST00000439235 TNRC6CQ9HCJ0 1690 aaKnown RBP25.68■■□□□ 1.7
CHD3-204ENST00000439235 PSDA5PKW4 1024 aaPredicted RBP25.68■■□□□ 1.7
CHD3-204ENST00000439235 SURF6O75683 361 aaKnown RBP25.68■■□□□ 1.7
CHD3-204ENST00000439235 ITGA6P23229 1130 aa25.68■■□□□ 1.7
CHD3-204ENST00000439235 TAF7LQ5H9L4 462 aa25.68■■□□□ 1.7
CHD3-204ENST00000439235 COPRSQ9NQ92 184 aa25.68■■□□□ 1.7
CHD3-204ENST00000439235 ZBTB7AO95365 584 aa25.67■■□□□ 1.7
CHD3-204ENST00000439235 NOP58Q9Y2X3 529 aaKnown RBP25.67■■□□□ 1.7
CHD3-204ENST00000439235 RAB11FIP3O75154 756 aa25.66■■□□□ 1.7
CHD3-204ENST00000439235 POLD1P28340 1107 aa25.66■■□□□ 1.7
CHD3-204ENST00000439235 PTPN12Q05209 780 aaKnown RBP25.66■■□□□ 1.7
CHD3-204ENST00000439235 C3orf67Q6ZVT6 689 aa25.66■■□□□ 1.7
CHD3-204ENST00000439235 BRIP1Q9BX63 1249 aa25.66■■□□□ 1.7
CHD3-204ENST00000439235 EXOC6BQ9Y2D4 811 aa25.66■■□□□ 1.7
CHD3-204ENST00000439235 OS9Q13438 667 aaPredicted RBP25.65■■□□□ 1.7
CHD3-204ENST00000439235 ERC1Q8IUD2 1116 aa25.65■■□□□ 1.7
CHD3-204ENST00000439235 PA2G4Q9UQ80 394 aaKnown RBP25.65■■□□□ 1.7
CHD3-204ENST00000439235 G3BP1Q13283 466 aaKnown RBP eCLIP25.64■■□□□ 1.7
CHD3-204ENST00000439235 CDC5LQ99459 802 aaKnown RBP25.64■■□□□ 1.7
CHD3-204ENST00000439235 ZBTB47Q9UFB7 747 aaPredicted RBP25.64■■□□□ 1.7
CHD3-204ENST00000439235 FBXO3Q9UK99 471 aa25.64■■□□□ 1.7
CHD3-204ENST00000439235 PDE6BP35913 854 aa25.63■■□□□ 1.69
CHD3-204ENST00000439235 CRY2Q49AN0 593 aa25.63■■□□□ 1.69
CHD3-204ENST00000439235 KLHDC4Q8TBB5 520 aa25.63■■□□□ 1.69
CHD3-204ENST00000439235 LRP5O75197 1615 aa25.63■■□□□ 1.69
CHD3-204ENST00000439235 RPGRQ92834 1020 aaKnown RBP25.62■■□□□ 1.69
CHD3-204ENST00000439235 SIL1Q9H173 461 aa25.62■■□□□ 1.69
CHD3-204ENST00000439235 ATF5Q9Y2D1 282 aaPredicted RBP25.62■■□□□ 1.69
CHD3-204ENST00000439235 C10orf71Q711Q0 1435 aa25.62■■□□□ 1.69
CHD3-204ENST00000439235 KLRG2A4D1S0 409 aaPredicted RBP25.61■■□□□ 1.69
CHD3-204ENST00000439235 CIAO1O76071 339 aa25.61■■□□□ 1.69
CHD3-204ENST00000439235 IGHMBP2P38935 993 aaKnown RBP25.61■■□□□ 1.69
CHD3-204ENST00000439235 DDX46Q7L014 1031 aaKnown RBP25.61■■□□□ 1.69
CHD3-204ENST00000439235 EYA2O00167 538 aa25.6■■□□□ 1.69
CHD3-204ENST00000439235 NUCB1Q02818 461 aa25.6■■□□□ 1.69
CHD3-204ENST00000439235 ANKRD45Q5TZF3 282 aa25.6■■□□□ 1.69
CHD3-204ENST00000439235 KIF1BPQ96EK5 621 aa25.6■■□□□ 1.69
CHD3-204ENST00000439235 ZNF594Q96JF6 807 aaPredicted RBP25.6■■□□□ 1.69
CHD3-204ENST00000439235 LRRCC1Q9C099 1032 aa25.6■■□□□ 1.69
CHD3-204ENST00000439235 SEC31BQ9NQW1 1179 aa25.6■■□□□ 1.69
CHD3-204ENST00000439235 PDZRN3Q9UPQ7 1066 aa25.6■■□□□ 1.69
CHD3-204ENST00000439235 APBB1O00213 710 aa25.59■■□□□ 1.69
CHD3-204ENST00000439235 IL15P40933 162 aaPredicted RBP25.59■■□□□ 1.69
CHD3-204ENST00000439235 ANKRD18AQ8IVF6 992 aa25.59■■□□□ 1.69
CHD3-204ENST00000439235 RBM17Q96I25 401 aaKnown RBP25.59■■□□□ 1.69
CHD3-204ENST00000439235 ANKRD31Q8N7Z5 1873 aa25.59■■□□□ 1.69
CHD3-204ENST00000439235 LDHAL6AQ6ZMR3 332 aa25.58■■□□□ 1.69
CHD3-204ENST00000439235 RHPN1Q8TCX5 695 aa25.58■■□□□ 1.69
CHD3-204ENST00000439235 MPHOSPH8Q99549 860 aa25.58■■□□□ 1.69
CHD3-204ENST00000439235 CHD1LQ86WJ1 897 aa25.57■■□□□ 1.68
CHD3-204ENST00000439235 CNNM1Q9NRU3 951 aa25.57■■□□□ 1.68
CHD3-204ENST00000439235 HOXA10P31260 410 aaPredicted RBP25.56■■□□□ 1.68
CHD3-204ENST00000439235 GRAPQ13588 217 aa25.56■■□□□ 1.68
CHD3-204ENST00000439235 GRAPLQ8TC17 118 aaPredicted RBP25.56■■□□□ 1.68
CHD3-204ENST00000439235 NPR1P16066 1061 aa25.55■■□□□ 1.68
CHD3-204ENST00000439235 ATG9AQ7Z3C6 839 aa25.55■■□□□ 1.68
CHD3-204ENST00000439235 CRAMP1Q96RY5 1269 aa25.55■■□□□ 1.68
CHD3-204ENST00000439235 SRGNP10124 158 aa25.54■■□□□ 1.68
CHD3-204ENST00000439235 RPS8P62241 208 aaKnown RBP25.54■■□□□ 1.68
CHD3-204ENST00000439235 LRRC24Q50LG9 513 aa25.54■■□□□ 1.68
CHD3-204ENST00000439235 CELF1Q92879 486 aaKnown RBP25.54■■□□□ 1.68
CHD3-204ENST00000439235 SGIP1Q9BQI5 828 aa25.54■■□□□ 1.68
CHD3-204ENST00000439235 PUS3Q9BZE2 481 aaKnown RBP25.54■■□□□ 1.68
CHD3-204ENST00000439235 LNPKQ9C0E8 428 aa25.54■■□□□ 1.68
CHD3-204ENST00000439235 H0YIN7 160 aa25.53■■□□□ 1.68
CHD3-204ENST00000439235 SASH1O94885 1247 aa25.53■■□□□ 1.68
CHD3-204ENST00000439235 C2CD5Q86YS7 1000 aa25.53■■□□□ 1.68
CHD3-204ENST00000439235 MASTLQ96GX5 879 aa25.53■■□□□ 1.68
CHD3-204ENST00000439235 SPON1Q9HCB6 807 aa25.53■■□□□ 1.68
CHD3-204ENST00000439235 CLASRPQ8N2M8 674 aaKnown RBP25.52■■□□□ 1.68
CHD3-204ENST00000439235 BSDC1Q9NW68 430 aaPredicted RBP25.52■■□□□ 1.68
CHD3-204ENST00000439235 CEP126Q9P2H0 1117 aa25.52■■□□□ 1.68
CHD3-204ENST00000439235 RIPOR2Q9Y4F9 1068 aa25.52■■□□□ 1.68
CHD3-204ENST00000439235 MROH5Q6ZUA9 1318 aa25.52■■□□□ 1.68
CHD3-204ENST00000439235 COL11A2P13942 1736 aaPredicted RBP25.51■■□□□ 1.68
CHD3-204ENST00000439235 SMARCA5O60264 1052 aaPredicted RBP25.51■■□□□ 1.67
CHD3-204ENST00000439235 PTGER2P43116 358 aa25.51■■□□□ 1.67
CHD3-204ENST00000439235 METTL24Q5JXM2 366 aa25.51■■□□□ 1.67
CHD3-204ENST00000439235 STYK1Q6J9G0 422 aa25.51■■□□□ 1.67
CHD3-204ENST00000439235 ALDH1B1P30837 517 aa25.5■■□□□ 1.67
CHD3-204ENST00000439235 TFCP2Q12800 502 aa25.5■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms