RNA–Protein interactions for RNA: ENST00000438773.2

TRAPPC9-202, Transcript of trafficking protein particle complex 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAPPC9, Length 4,297 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC9-202ENST00000438773 NAPBQ9H115 298 aa13.65□□□□□ -0.22
TRAPPC9-202ENST00000438773 PRDM10Q9NQV6 1147 aa13.65□□□□□ -0.22
TRAPPC9-202ENST00000438773 MARCH6O60337 910 aa13.65□□□□□ -0.22
TRAPPC9-202ENST00000438773 SLC3A2P08195 630 aaKnown RBP13.65□□□□□ -0.22
TRAPPC9-202ENST00000438773 GSPT1P15170 499 aaKnown RBP13.65□□□□□ -0.22
TRAPPC9-202ENST00000438773 NMIQ13287 307 aaPredicted RBP13.65□□□□□ -0.22
TRAPPC9-202ENST00000438773 MAPK8IP2Q13387 824 aaPredicted RBP13.65□□□□□ -0.22
TRAPPC9-202ENST00000438773 ANKIB1Q9P2G1 1089 aa13.65□□□□□ -0.22
TRAPPC9-202ENST00000438773 UTP14AQ9BVJ6 771 aaKnown RBP13.64□□□□□ -0.23
TRAPPC9-202ENST00000438773 CYP27B1O15528 508 aa13.64□□□□□ -0.23
TRAPPC9-202ENST00000438773 RRP9O43818 475 aaKnown RBP13.64□□□□□ -0.23
TRAPPC9-202ENST00000438773 HAND2P61296 217 aa13.64□□□□□ -0.23
TRAPPC9-202ENST00000438773 ZNF213O14771 459 aa13.64□□□□□ -0.23
TRAPPC9-202ENST00000438773 BAG4O95429 457 aaKnown RBP13.64□□□□□ -0.23
TRAPPC9-202ENST00000438773 ZNF594Q96JF6 807 aaPredicted RBP13.64□□□□□ -0.23
TRAPPC9-202ENST00000438773 SETDB2Q96T68 719 aa13.64□□□□□ -0.23
TRAPPC9-202ENST00000438773 DBNDD2Q9BQY9 259 aa13.64□□□□□ -0.23
TRAPPC9-202ENST00000438773 ASAP1Q9ULH1 1129 aa13.64□□□□□ -0.23
TRAPPC9-202ENST00000438773 C1orf167Q5SNV9 1468 aa13.64□□□□□ -0.23
TRAPPC9-202ENST00000438773 KDRP35968 1356 aa13.63□□□□□ -0.23
TRAPPC9-202ENST00000438773 EYA2O00167 538 aa13.63□□□□□ -0.23
TRAPPC9-202ENST00000438773 NUP133Q8WUM0 1156 aa13.63□□□□□ -0.23
TRAPPC9-202ENST00000438773 SDF4Q9BRK5 362 aa13.63□□□□□ -0.23
TRAPPC9-202ENST00000438773 CCDC69A6NI79 296 aa13.63□□□□□ -0.23
TRAPPC9-202ENST00000438773 MINDY4BA8MYZ0 360 aa13.63□□□□□ -0.23
TRAPPC9-202ENST00000438773 ZNF772Q68DY9 489 aaPredicted RBP13.63□□□□□ -0.23
TRAPPC9-202ENST00000438773 SASS6Q6UVJ0 657 aa13.63□□□□□ -0.23
TRAPPC9-202ENST00000438773 CREBRFQ8IUR6 639 aa13.63□□□□□ -0.23
TRAPPC9-202ENST00000438773 UBAC1Q9BSL1 405 aa13.63□□□□□ -0.23
TRAPPC9-202ENST00000438773 PAG1Q9NWQ8 432 aa13.63□□□□□ -0.23
TRAPPC9-202ENST00000438773 IQSEC3Q9UPP2 1182 aaPredicted RBP13.63□□□□□ -0.23
TRAPPC9-202ENST00000438773 ADGRB2O60241 1585 aa13.63□□□□□ -0.23
TRAPPC9-202ENST00000438773 HMGB1P09429 215 aaKnown RBP13.63□□□□□ -0.23
TRAPPC9-202ENST00000438773 XBP1P17861 261 aa13.63□□□□□ -0.23
TRAPPC9-202ENST00000438773 TTF1Q15361 905 aaPredicted RBP13.63□□□□□ -0.23
TRAPPC9-202ENST00000438773 NEK1Q96PY6 1258 aa13.63□□□□□ -0.23
TRAPPC9-202ENST00000438773 AK9Q5TCS8 1911 aa13.63□□□□□ -0.23
TRAPPC9-202ENST00000438773 MCMDC2Q4G0Z9 681 aa13.62□□□□□ -0.23
TRAPPC9-202ENST00000438773 TNNI3KQ59H18 835 aa13.62□□□□□ -0.23
TRAPPC9-202ENST00000438773 HMG20BQ9P0W2 317 aa13.62□□□□□ -0.23
TRAPPC9-202ENST00000438773 FPGT-TNNI3KV9GXZ4 949 aa13.62□□□□□ -0.23
TRAPPC9-202ENST00000438773 ARHGEF28Q8N1W1 1705 aaKnown RBP13.62□□□□□ -0.23
TRAPPC9-202ENST00000438773 ANKRD18AQ8IVF6 992 aa13.62□□□□□ -0.23
TRAPPC9-202ENST00000438773 NLRP3Q96P20 1036 aa13.62□□□□□ -0.23
TRAPPC9-202ENST00000438773 CD163L1Q9NR16 1453 aa13.62□□□□□ -0.23
TRAPPC9-202ENST00000438773 UQCRFS1P1P0C7P4 283 aa13.61□□□□□ -0.23
TRAPPC9-202ENST00000438773 HCLS1P14317 486 aaPredicted RBP13.61□□□□□ -0.23
TRAPPC9-202ENST00000438773 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.61□□□□□ -0.23
TRAPPC9-202ENST00000438773 ZNF771Q7L3S4 317 aaPredicted RBP13.61□□□□□ -0.23
TRAPPC9-202ENST00000438773 TRIM22Q8IYM9 498 aa13.61□□□□□ -0.23
TRAPPC9-202ENST00000438773 SPC24Q8NBT2 197 aa13.61□□□□□ -0.23
TRAPPC9-202ENST00000438773 DIP2AQ14689 1571 aa13.61□□□□□ -0.23
TRAPPC9-202ENST00000438773 A0A1B0GUL7 405 aa13.61□□□□□ -0.23
TRAPPC9-202ENST00000438773 SH3TC1Q8TE82 1336 aa13.61□□□□□ -0.23
TRAPPC9-202ENST00000438773 TCIRG1Q13488 830 aa13.61□□□□□ -0.23
TRAPPC9-202ENST00000438773 STK38Q15208 465 aa13.61□□□□□ -0.23
TRAPPC9-202ENST00000438773 RPGRQ92834 1020 aaKnown RBP13.61□□□□□ -0.23
TRAPPC9-202ENST00000438773 RBM27Q9P2N5 1060 aaKnown RBP13.61□□□□□ -0.23
TRAPPC9-202ENST00000438773 CEP170BQ9Y4F5 1589 aaPredicted RBP13.61□□□□□ -0.23
TRAPPC9-202ENST00000438773 ZFYP08048 801 aaPredicted RBP13.61□□□□□ -0.23
TRAPPC9-202ENST00000438773 ZNF396Q96N95 335 aaPredicted RBP13.61□□□□□ -0.23
TRAPPC9-202ENST00000438773 IFT172Q9UG01 1749 aa13.61□□□□□ -0.23
TRAPPC9-202ENST00000438773 VPS53Q5VIR6 699 aa13.6□□□□□ -0.23
TRAPPC9-202ENST00000438773 CCAR2Q8N163 923 aaKnown RBP13.6□□□□□ -0.23
TRAPPC9-202ENST00000438773 CCT2P78371 535 aaKnown RBP13.6□□□□□ -0.23
TRAPPC9-202ENST00000438773 QTRT2Q9H974 415 aaKnown RBP13.6□□□□□ -0.23
TRAPPC9-202ENST00000438773 RTCBQ9Y3I0 505 aaKnown RBP13.6□□□□□ -0.23
TRAPPC9-202ENST00000438773 AOX1Q06278 1338 aa13.6□□□□□ -0.23
TRAPPC9-202ENST00000438773 ITGA6P23229 1130 aa13.6□□□□□ -0.23
TRAPPC9-202ENST00000438773 SLC9C2Q5TAH2 1124 aa13.6□□□□□ -0.23
TRAPPC9-202ENST00000438773 ZGPATQ8N5A5 531 aaKnown RBP13.6□□□□□ -0.23
TRAPPC9-202ENST00000438773 NECAB1Q8N987 351 aa13.6□□□□□ -0.23
TRAPPC9-202ENST00000438773 LRRC2Q9BYS8 371 aa13.6□□□□□ -0.23
TRAPPC9-202ENST00000438773 IBTKQ9P2D0 1353 aaPredicted RBP13.6□□□□□ -0.23
TRAPPC9-202ENST00000438773 CCDC173Q0VFZ6 552 aa13.59□□□□□ -0.23
TRAPPC9-202ENST00000438773 CCDC87Q9NVE4 849 aa13.59□□□□□ -0.23
TRAPPC9-202ENST00000438773 TRPC5Q9UL62 973 aaPredicted RBP13.59□□□□□ -0.23
TRAPPC9-202ENST00000438773 NDUFB9Q9Y6M9 179 aa13.59□□□□□ -0.23
TRAPPC9-202ENST00000438773 KINO60870 393 aaKnown RBP13.59□□□□□ -0.23
TRAPPC9-202ENST00000438773 PDIA4P13667 645 aaKnown RBP13.59□□□□□ -0.23
TRAPPC9-202ENST00000438773 RXRBP28702 533 aa13.59□□□□□ -0.23
TRAPPC9-202ENST00000438773 ME1P48163 572 aa13.59□□□□□ -0.23
TRAPPC9-202ENST00000438773 BRF1Q92994 677 aa13.59□□□□□ -0.23
TRAPPC9-202ENST00000438773 EAF2Q96CJ1 260 aaPredicted RBP13.59□□□□□ -0.23
TRAPPC9-202ENST00000438773 SPATA32Q96LK8 384 aa13.59□□□□□ -0.23
TRAPPC9-202ENST00000438773 GDPD2Q9HCC8 539 aa13.59□□□□□ -0.23
TRAPPC9-202ENST00000438773 BRMS1Q9HCU9 246 aa13.59□□□□□ -0.23
TRAPPC9-202ENST00000438773 REREQ9P2R6 1566 aa13.59□□□□□ -0.23
TRAPPC9-202ENST00000438773 DZIP1Q86YF9 867 aaKnown RBP13.59□□□□□ -0.23
TRAPPC9-202ENST00000438773 SGSM2O43147 1006 aa13.59□□□□□ -0.23
TRAPPC9-202ENST00000438773 KLHL40Q2TBA0 621 aa13.59□□□□□ -0.23
TRAPPC9-202ENST00000438773 TNS3Q68CZ2 1445 aa13.58□□□□□ -0.24
TRAPPC9-202ENST00000438773 GNPATO15228 680 aa13.58□□□□□ -0.24
TRAPPC9-202ENST00000438773 PPFIA3O75145 1194 aa13.58□□□□□ -0.24
TRAPPC9-202ENST00000438773 CDKL5O76039 1030 aa13.58□□□□□ -0.24
TRAPPC9-202ENST00000438773 GJB2P29033 226 aa13.58□□□□□ -0.24
TRAPPC9-202ENST00000438773 BAG6P46379 1132 aa13.58□□□□□ -0.24
TRAPPC9-202ENST00000438773 RIMS1Q86UR5 1692 aaKnown RBP13.58□□□□□ -0.24
TRAPPC9-202ENST00000438773 TPTE2Q6XPS3 522 aa13.58□□□□□ -0.24
TRAPPC9-202ENST00000438773 ZSCAN30Q86W11 494 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms