RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 SP8Q8IXZ3 490 aa19.38■□□□□ 0.69
LIMS3-201ENST00000437679 SNED1Q8TER0 1413 aa19.38■□□□□ 0.69
LIMS3-201ENST00000437679 JARID2Q92833 1246 aaPredicted RBP19.38■□□□□ 0.69
LIMS3-201ENST00000437679 PDE8AO60658 829 aa19.37■□□□□ 0.69
LIMS3-201ENST00000437679 CWF19L2Q2TBE0 894 aaKnown RBP19.37■□□□□ 0.69
LIMS3-201ENST00000437679 C16orf71Q8IYS4 520 aaPredicted RBP19.37■□□□□ 0.69
LIMS3-201ENST00000437679 RRAGCQ9HB90 399 aa19.37■□□□□ 0.69
LIMS3-201ENST00000437679 CDHR2Q9BYE9 1310 aa19.36■□□□□ 0.69
LIMS3-201ENST00000437679 CCDC152Q4G0S7 254 aa19.36■□□□□ 0.69
LIMS3-201ENST00000437679 CDCA7LQ96GN5 454 aa19.36■□□□□ 0.69
LIMS3-201ENST00000437679 TAF1P21675 1872 aa19.36■□□□□ 0.69
LIMS3-201ENST00000437679 LINS1Q8NG48 757 aa19.35■□□□□ 0.69
LIMS3-201ENST00000437679 JDP2Q8WYK2 163 aa19.35■□□□□ 0.69
LIMS3-201ENST00000437679 TOMM70O94826 608 aa19.34■□□□□ 0.69
LIMS3-201ENST00000437679 GCKRQ14397 625 aa19.34■□□□□ 0.69
LIMS3-201ENST00000437679 DPP8Q6V1X1 898 aaPredicted RBP19.34■□□□□ 0.69
LIMS3-201ENST00000437679 SLC51AQ86UW1 340 aa19.34■□□□□ 0.69
LIMS3-201ENST00000437679 MPNDQ8N594 471 aa19.34■□□□□ 0.69
LIMS3-201ENST00000437679 SUPT20HQ8NEM7 779 aa19.34■□□□□ 0.69
LIMS3-201ENST00000437679 CELF1Q92879 486 aaKnown RBP19.34■□□□□ 0.69
LIMS3-201ENST00000437679 F6X3S4 739 aa19.33■□□□□ 0.68
LIMS3-201ENST00000437679 VEGFAP15692 232 aaPredicted RBP19.33■□□□□ 0.68
LIMS3-201ENST00000437679 LARGE2Q8N3Y3 721 aa19.33■□□□□ 0.68
LIMS3-201ENST00000437679 H7C1W4 665 aa19.32■□□□□ 0.68
LIMS3-201ENST00000437679 RPS8P62241 208 aaKnown RBP19.32■□□□□ 0.68
LIMS3-201ENST00000437679 UBE3BQ7Z3V4 1068 aa19.32■□□□□ 0.68
LIMS3-201ENST00000437679 TRMT2AQ8IZ69 625 aaKnown RBP19.32■□□□□ 0.68
LIMS3-201ENST00000437679 VPS33BQ9H267 617 aa19.32■□□□□ 0.68
LIMS3-201ENST00000437679 PPIP5K2O43314 1243 aa19.31■□□□□ 0.68
LIMS3-201ENST00000437679 DDNO94850 711 aaPredicted RBP19.31■□□□□ 0.68
LIMS3-201ENST00000437679 CTSWP56202 376 aa19.31■□□□□ 0.68
LIMS3-201ENST00000437679 CCDC85AQ96PX6 553 aaPredicted RBP19.31■□□□□ 0.68
LIMS3-201ENST00000437679 RTFDC1Q9BY42 306 aaPredicted RBP19.31■□□□□ 0.68
LIMS3-201ENST00000437679 SEC31BQ9NQW1 1179 aa19.31■□□□□ 0.68
LIMS3-201ENST00000437679 MYH3P11055 1940 aa19.31■□□□□ 0.68
LIMS3-201ENST00000437679 FZD9O00144 591 aa19.3■□□□□ 0.68
LIMS3-201ENST00000437679 BEND3Q5T5X7 828 aa19.3■□□□□ 0.68
LIMS3-201ENST00000437679 MRPL50Q8N5N7 158 aaKnown RBP19.3■□□□□ 0.68
LIMS3-201ENST00000437679 RBM46Q8TBY0 533 aaKnown RBP19.3■□□□□ 0.68
LIMS3-201ENST00000437679 WDR90Q96KV7 1748 aa19.3■□□□□ 0.68
LIMS3-201ENST00000437679 CT47B1P0C2W7 299 aaPredicted RBP19.29■□□□□ 0.68
LIMS3-201ENST00000437679 EIF6P56537 245 aaKnown RBP19.29■□□□□ 0.68
LIMS3-201ENST00000437679 AOC3Q16853 763 aa19.29■□□□□ 0.68
LIMS3-201ENST00000437679 SLC4A10Q6U841 1118 aa19.29■□□□□ 0.68
LIMS3-201ENST00000437679 NIM1KQ8IY84 436 aa19.29■□□□□ 0.68
LIMS3-201ENST00000437679 SSH1Q8WYL5 1049 aa19.29■□□□□ 0.68
LIMS3-201ENST00000437679 NSFL1CQ9UNZ2 370 aaKnown RBP19.29■□□□□ 0.68
LIMS3-201ENST00000437679 LRRC37AA6NMS7 1700 aa19.28■□□□□ 0.68
LIMS3-201ENST00000437679 ZNF541Q9H0D2 1346 aa19.28■□□□□ 0.68
LIMS3-201ENST00000437679 ALDH1L2Q3SY69 923 aa19.28■□□□□ 0.68
LIMS3-201ENST00000437679 ANKRD18AQ8IVF6 992 aa19.28■□□□□ 0.68
LIMS3-201ENST00000437679 TTLL11Q8NHH1 800 aa19.28■□□□□ 0.68
LIMS3-201ENST00000437679 CDC5LQ99459 802 aaKnown RBP19.28■□□□□ 0.68
LIMS3-201ENST00000437679 PLA2G12BQ9BX93 195 aa19.28■□□□□ 0.68
LIMS3-201ENST00000437679 PTPRCP08575 1304 aa19.27■□□□□ 0.68
LIMS3-201ENST00000437679 CASP7P55210 303 aa19.27■□□□□ 0.68
LIMS3-201ENST00000437679 COL4A1P02462 1669 aa19.27■□□□□ 0.67
LIMS3-201ENST00000437679 IQCA1LA6NCM1 817 aa19.26■□□□□ 0.67
LIMS3-201ENST00000437679 POTECB2RU33 542 aa19.26■□□□□ 0.67
LIMS3-201ENST00000437679 ALDH1L1O75891 902 aa19.26■□□□□ 0.67
LIMS3-201ENST00000437679 GPSM2P81274 684 aa19.26■□□□□ 0.67
LIMS3-201ENST00000437679 HNRNPUQ00839 825 aaKnown RBP eCLIP19.26■□□□□ 0.67
LIMS3-201ENST00000437679 KIAA2012Q0VF49 1180 aa19.26■□□□□ 0.67
LIMS3-201ENST00000437679 L3MBTL3Q96JM7 780 aaPredicted RBP19.26■□□□□ 0.67
LIMS3-201ENST00000437679 BCL2L13Q9BXK5 485 aa19.26■□□□□ 0.67
LIMS3-201ENST00000437679 SRCIN1Q9C0H9 1055 aa19.26■□□□□ 0.67
LIMS3-201ENST00000437679 GREM2Q9H772 168 aa19.26■□□□□ 0.67
LIMS3-201ENST00000437679 SMC4Q9NTJ3 1288 aa19.26■□□□□ 0.67
LIMS3-201ENST00000437679 RTL9Q8NET4 1388 aa19.26■□□□□ 0.67
LIMS3-201ENST00000437679 COL4A5P29400 1685 aa19.26■□□□□ 0.67
LIMS3-201ENST00000437679 C6orf229H3BNL8 230 aa19.25■□□□□ 0.67
LIMS3-201ENST00000437679 FSTL1Q12841 308 aa19.25■□□□□ 0.67
LIMS3-201ENST00000437679 GPC2Q8N158 579 aa19.25■□□□□ 0.67
LIMS3-201ENST00000437679 C9orf78Q9NZ63 289 aaPredicted RBP19.25■□□□□ 0.67
LIMS3-201ENST00000437679 GRM8O00222 908 aa19.24■□□□□ 0.67
LIMS3-201ENST00000437679 HSPA6P17066 643 aa19.24■□□□□ 0.67
LIMS3-201ENST00000437679 SMC1BQ8NDV3 1235 aa19.24■□□□□ 0.67
LIMS3-201ENST00000437679 EYA3Q99504 573 aa19.24■□□□□ 0.67
LIMS3-201ENST00000437679 ANKIB1Q9P2G1 1089 aa19.24■□□□□ 0.67
LIMS3-201ENST00000437679 ZNRF3Q9ULT6 936 aa19.24■□□□□ 0.67
LIMS3-201ENST00000437679 GJA3Q9Y6H8 435 aa19.24■□□□□ 0.67
LIMS3-201ENST00000437679 DUOX1Q9NRD9 1551 aa19.23■□□□□ 0.67
LIMS3-201ENST00000437679 SCN4AP35499 1836 aa19.23■□□□□ 0.67
LIMS3-201ENST00000437679 WASHC4Q2M389 1173 aa19.23■□□□□ 0.67
LIMS3-201ENST00000437679 CSF1RP07333 972 aa19.22■□□□□ 0.67
LIMS3-201ENST00000437679 ITGA6P23229 1130 aa19.22■□□□□ 0.67
LIMS3-201ENST00000437679 IGHMBP2P38935 993 aaKnown RBP19.22■□□□□ 0.67
LIMS3-201ENST00000437679 TBC1D16Q8TBP0 767 aa19.22■□□□□ 0.67
LIMS3-201ENST00000437679 BSDC1Q9NW68 430 aaPredicted RBP19.22■□□□□ 0.67
LIMS3-201ENST00000437679 PODXL2Q9NZ53 605 aa19.22■□□□□ 0.67
LIMS3-201ENST00000437679 POLLQ9UGP5 575 aa19.22■□□□□ 0.67
LIMS3-201ENST00000437679 HACL1Q9UJ83 578 aa19.22■□□□□ 0.67
LIMS3-201ENST00000437679 GGA1Q9UJY5 639 aa19.22■□□□□ 0.67
LIMS3-201ENST00000437679 RIMBP2O15034 1052 aa19.21■□□□□ 0.67
LIMS3-201ENST00000437679 UFL1O94874 794 aa19.21■□□□□ 0.67
LIMS3-201ENST00000437679 FAM161AQ3B820 660 aa19.21■□□□□ 0.67
LIMS3-201ENST00000437679 XDHP47989 1333 aa19.21■□□□□ 0.67
LIMS3-201ENST00000437679 ANKRD18BA2A2Z9 1011 aa19.2■□□□□ 0.66
LIMS3-201ENST00000437679 LMOD1P29536 600 aaPredicted RBP19.2■□□□□ 0.66
LIMS3-201ENST00000437679 TAF1DQ9H5J8 278 aaPredicted RBP19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms