RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 DNMT1P26358 1616 aaKnown RBP13.84□□□□□ -0.19
CCDC88A-207ENST00000436346 HDAC9Q9UKV0 1011 aa13.84□□□□□ -0.19
CCDC88A-207ENST00000436346 BIN1O00499 593 aa13.84□□□□□ -0.19
CCDC88A-207ENST00000436346 SSX2IPQ9Y2D8 614 aa13.84□□□□□ -0.19
CCDC88A-207ENST00000436346 SNRPA1P09661 255 aaKnown RBP13.84□□□□□ -0.19
CCDC88A-207ENST00000436346 WWC3Q9ULE0 1092 aa13.84□□□□□ -0.19
CCDC88A-207ENST00000436346 USO1O60763 962 aaKnown RBP13.83□□□□□ -0.19
CCDC88A-207ENST00000436346 RARSP54136 660 aaKnown RBP13.83□□□□□ -0.2
CCDC88A-207ENST00000436346 PPFIA3O75145 1194 aa13.83□□□□□ -0.2
CCDC88A-207ENST00000436346 TRIM27P14373 513 aa13.83□□□□□ -0.2
CCDC88A-207ENST00000436346 ASXL2Q76L83 1435 aa13.83□□□□□ -0.2
CCDC88A-207ENST00000436346 STAT6P42226 847 aa13.83□□□□□ -0.2
CCDC88A-207ENST00000436346 IKBKGQ9Y6K9 419 aa13.83□□□□□ -0.2
CCDC88A-207ENST00000436346 IDEP14735 1019 aa13.83□□□□□ -0.2
CCDC88A-207ENST00000436346 UBXN4Q92575 508 aa13.83□□□□□ -0.2
CCDC88A-207ENST00000436346 CEP63Q96MT8 703 aa13.83□□□□□ -0.2
CCDC88A-207ENST00000436346 PRC1O43663 620 aa13.83□□□□□ -0.2
CCDC88A-207ENST00000436346 CALM1P0DP23 149 aa13.83□□□□□ -0.2
CCDC88A-207ENST00000436346 CALM2P0DP24 149 aa13.83□□□□□ -0.2
CCDC88A-207ENST00000436346 CALM3P0DP25 149 aa13.83□□□□□ -0.2
CCDC88A-207ENST00000436346 NCOA7Q8NI08 942 aa13.83□□□□□ -0.2
CCDC88A-207ENST00000436346 LDHCP07864 332 aa13.82□□□□□ -0.2
CCDC88A-207ENST00000436346 MAP3K9P80192 1104 aa13.82□□□□□ -0.2
CCDC88A-207ENST00000436346 DISP3Q9P2K9 1392 aa13.82□□□□□ -0.2
CCDC88A-207ENST00000436346 UHRF1BP1LA0JNW5 1464 aa13.82□□□□□ -0.2
CCDC88A-207ENST00000436346 MCM5P33992 734 aa13.82□□□□□ -0.2
CCDC88A-207ENST00000436346 NOP2P46087 812 aaKnown RBP13.82□□□□□ -0.2
CCDC88A-207ENST00000436346 FAM83GA6ND36 823 aa13.82□□□□□ -0.2
CCDC88A-207ENST00000436346 CTAGE5O15320 804 aa13.82□□□□□ -0.2
CCDC88A-207ENST00000436346 PTPN14Q15678 1187 aa13.82□□□□□ -0.2
CCDC88A-207ENST00000436346 KIF2AO00139 706 aaPredicted RBP13.82□□□□□ -0.2
CCDC88A-207ENST00000436346 GJB2P29033 226 aa13.82□□□□□ -0.2
CCDC88A-207ENST00000436346 TSNARE1Q96NA8 513 aa13.82□□□□□ -0.2
CCDC88A-207ENST00000436346 UBA7P41226 1012 aa13.82□□□□□ -0.2
CCDC88A-207ENST00000436346 WTAPQ15007 396 aa13.82□□□□□ -0.2
CCDC88A-207ENST00000436346 IQSEC3Q9UPP2 1182 aaPredicted RBP13.82□□□□□ -0.2
CCDC88A-207ENST00000436346 LMOD1P29536 600 aaPredicted RBP13.81□□□□□ -0.2
CCDC88A-207ENST00000436346 HLTFQ14527 1009 aaKnown RBP eCLIP13.81□□□□□ -0.21e-6■□□□□ 9
CCDC88A-207ENST00000436346 KIF18AQ8NI77 898 aa13.81□□□□□ -0.2
CCDC88A-207ENST00000436346 KRT23Q9C075 422 aa13.81□□□□□ -0.2
CCDC88A-207ENST00000436346 UGGT2Q9NYU1 1516 aa13.81□□□□□ -0.2
CCDC88A-207ENST00000436346 ANKRD36BQ8N2N9 1353 aa13.81□□□□□ -0.2
CCDC88A-207ENST00000436346 PLXNC1O60486 1568 aa13.81□□□□□ -0.2
CCDC88A-207ENST00000436346 RIMS2Q9UQ26 1411 aa13.81□□□□□ -0.2
CCDC88A-207ENST00000436346 PI4KAP2A4QPH2 592 aa13.81□□□□□ -0.2
CCDC88A-207ENST00000436346 PI4KAP1Q8N8J0 262 aa13.81□□□□□ -0.2
CCDC88A-207ENST00000436346 MAP3K1Q13233 1512 aa13.81□□□□□ -0.2
CCDC88A-207ENST00000436346 POLD1P28340 1107 aa13.81□□□□□ -0.2
CCDC88A-207ENST00000436346 ADGRF5Q8IZF2 1346 aa13.81□□□□□ -0.2
CCDC88A-207ENST00000436346 KAT6AQ92794 2004 aa13.81□□□□□ -0.2
CCDC88A-207ENST00000436346 MBIPQ9NS73 344 aa13.81□□□□□ -0.2
CCDC88A-207ENST00000436346 PYM1Q9BRP8 204 aaKnown RBP13.81□□□□□ -0.2
CCDC88A-207ENST00000436346 NYXQ9GZU5 481 aa13.81□□□□□ -0.2
CCDC88A-207ENST00000436346 HMG20BQ9P0W2 317 aa13.81□□□□□ -0.2
CCDC88A-207ENST00000436346 PPP4R3BQ5MIZ7 849 aa13.8□□□□□ -0.2
CCDC88A-207ENST00000436346 OTUD6BQ8N6M0 293 aa13.8□□□□□ -0.2
CCDC88A-207ENST00000436346 JADE2Q9NQC1 790 aa13.8□□□□□ -0.2
CCDC88A-207ENST00000436346 ACEP12821 1306 aa13.8□□□□□ -0.2
CCDC88A-207ENST00000436346 ARL1P40616 181 aaPredicted RBP13.8□□□□□ -0.2
CCDC88A-207ENST00000436346 ECHDC1Q9NTX5 307 aa13.8□□□□□ -0.2
CCDC88A-207ENST00000436346 ZNF608Q9ULD9 1512 aaPredicted RBP13.8□□□□□ -0.2
CCDC88A-207ENST00000436346 IARSP41252 1262 aaKnown RBP13.8□□□□□ -0.2
CCDC88A-207ENST00000436346 LRSAM1Q6UWE0 723 aa13.8□□□□□ -0.2
CCDC88A-207ENST00000436346 CPLX3Q8WVH0 158 aa13.8□□□□□ -0.2
CCDC88A-207ENST00000436346 USP16Q9Y5T5 823 aa13.8□□□□□ -0.2
CCDC88A-207ENST00000436346 PHACTR2O75167 634 aa13.8□□□□□ -0.2
CCDC88A-207ENST00000436346 DPH6Q7L8W6 267 aa13.8□□□□□ -0.2
CCDC88A-207ENST00000436346 PANK2Q9BZ23 570 aa13.8□□□□□ -0.2
CCDC88A-207ENST00000436346 PARP3Q9Y6F1 533 aa13.8□□□□□ -0.2
CCDC88A-207ENST00000436346 LMTK3Q96Q04 1460 aa13.8□□□□□ -0.2
CCDC88A-207ENST00000436346 SHTN1A0MZ66 631 aa13.8□□□□□ -0.2
CCDC88A-207ENST00000436346 ANKRD13DQ6ZTN6 518 aa13.79□□□□□ -0.2
CCDC88A-207ENST00000436346 MAP2P11137 1827 aaKnown RBP13.79□□□□□ -0.2
CCDC88A-207ENST00000436346 TMCO5BA8MYB1 307 aa13.79□□□□□ -0.2
CCDC88A-207ENST00000436346 ISM2Q6H9L7 571 aa13.79□□□□□ -0.2
CCDC88A-207ENST00000436346 TRPM2O94759 1503 aa13.79□□□□□ -0.2
CCDC88A-207ENST00000436346 TMC6Q7Z403 805 aa13.79□□□□□ -0.2
CCDC88A-207ENST00000436346 NCBP1Q09161 790 aaKnown RBP13.79□□□□□ -0.2
CCDC88A-207ENST00000436346 IDI1Q13907 227 aa13.79□□□□□ -0.2
CCDC88A-207ENST00000436346 KIF4BQ2VIQ3 1234 aa13.79□□□□□ -0.2
CCDC88A-207ENST00000436346 TFCP2L1Q9NZI6 479 aa13.79□□□□□ -0.2
CCDC88A-207ENST00000436346 ACTN2P35609 894 aa13.79□□□□□ -0.2
CCDC88A-207ENST00000436346 FERP16591 822 aa13.79□□□□□ -0.2
CCDC88A-207ENST00000436346 CYP7A1P22680 504 aa13.79□□□□□ -0.2
CCDC88A-207ENST00000436346 TRIM47Q96LD4 638 aa13.79□□□□□ -0.2
CCDC88A-207ENST00000436346 NPHP3Q7Z494 1330 aa13.78□□□□□ -0.2
CCDC88A-207ENST00000436346 SLC4A4Q9Y6R1 1079 aa13.78□□□□□ -0.2
CCDC88A-207ENST00000436346 TBC1D9Q6ZT07 1266 aa13.78□□□□□ -0.2
CCDC88A-207ENST00000436346 PPP1R14CQ8TAE6 165 aa13.78□□□□□ -0.2
CCDC88A-207ENST00000436346 ZCRB1Q8TBF4 217 aaKnown RBP13.78□□□□□ -0.2
CCDC88A-207ENST00000436346 SPDYE3A6NKU9 549 aa13.78□□□□□ -0.2
CCDC88A-207ENST00000436346 TOM1O60784 492 aa13.78□□□□□ -0.2
CCDC88A-207ENST00000436346 SREK1Q8WXA9 508 aaKnown RBP13.78□□□□□ -0.2
CCDC88A-207ENST00000436346 C16orf45Q96MC5 204 aaPredicted RBP13.78□□□□□ -0.2
CCDC88A-207ENST00000436346 FSD2A1L4K1 749 aa13.78□□□□□ -0.2
CCDC88A-207ENST00000436346 STX6O43752 255 aa13.78□□□□□ -0.2
CCDC88A-207ENST00000436346 NIP7Q9Y221 180 aaKnown RBP eCLIP13.78□□□□□ -0.2
CCDC88A-207ENST00000436346 MCM4P33991 863 aa13.78□□□□□ -0.2
CCDC88A-207ENST00000436346 RTN1Q16799 776 aa13.78□□□□□ -0.2
CCDC88A-207ENST00000436346 C20orf194Q5TEA3 1177 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms