RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 ANKRD13DQ6ZTN6 518 aa13.4□□□□□ -0.26
USP4-205ENST00000431357 COPS6Q7L5N1 327 aa13.4□□□□□ -0.26
USP4-205ENST00000431357 TTC6Q86TZ1 520 aa13.4□□□□□ -0.26
USP4-205ENST00000431357 TICAM2Q86XR7 235 aa13.4□□□□□ -0.26
USP4-205ENST00000431357 PRIMPOLQ96LW4 560 aa13.4□□□□□ -0.26
USP4-205ENST00000431357 U3KPZ7 1027 aaPredicted RBP13.4□□□□□ -0.26
USP4-205ENST00000431357 GOLGA6L6A8MZA4 724 aa13.4□□□□□ -0.26
USP4-205ENST00000431357 SNRPA1P09661 255 aaKnown RBP13.4□□□□□ -0.26
USP4-205ENST00000431357 PHKG2P15735 406 aa13.4□□□□□ -0.26
USP4-205ENST00000431357 HMGN5P82970 282 aaKnown RBP13.4□□□□□ -0.26
USP4-205ENST00000431357 TOB2Q14106 344 aaPredicted RBP13.4□□□□□ -0.26
USP4-205ENST00000431357 MAP3K11Q16584 847 aa13.4□□□□□ -0.26
USP4-205ENST00000431357 NUP62CLQ9H1M0 184 aa13.4□□□□□ -0.26
USP4-205ENST00000431357 SCN11AQ9UI33 1791 aa13.4□□□□□ -0.27
USP4-205ENST00000431357 MYL6BP14649 208 aa13.39□□□□□ -0.27
USP4-205ENST00000431357 RFX5P48382 616 aaPredicted RBP13.39□□□□□ -0.27
USP4-205ENST00000431357 RABL6Q3YEC7 729 aaPredicted RBP13.39□□□□□ -0.27
USP4-205ENST00000431357 TNNI3KQ59H18 835 aa13.39□□□□□ -0.27
USP4-205ENST00000431357 CDC37L1Q7L3B6 337 aa13.39□□□□□ -0.27
USP4-205ENST00000431357 IFNL2Q8IZJ0 200 aa13.39□□□□□ -0.27
USP4-205ENST00000431357 DDX54Q8TDD1 881 aaKnown RBP13.39□□□□□ -0.27
USP4-205ENST00000431357 DDX19AQ9NUU7 478 aaKnown RBP13.39□□□□□ -0.27
USP4-205ENST00000431357 FPGT-TNNI3KV9GXZ4 949 aa13.39□□□□□ -0.27
USP4-205ENST00000431357 KDM6AO15550 1401 aaPredicted RBP13.39□□□□□ -0.27
USP4-205ENST00000431357 GOLGA6L4A6NEF3 574 aa13.39□□□□□ -0.27
USP4-205ENST00000431357 SLC39A6Q13433 755 aa13.39□□□□□ -0.27
USP4-205ENST00000431357 EPHA10Q5JZY3 1008 aa13.39□□□□□ -0.27
USP4-205ENST00000431357 DNTTIP2Q5QJE6 756 aaKnown RBP13.39□□□□□ -0.27
USP4-205ENST00000431357 FAM200AQ8TCP9 573 aa13.39□□□□□ -0.27
USP4-205ENST00000431357 NEK1Q96PY6 1258 aa13.39□□□□□ -0.27
USP4-205ENST00000431357 SPTLC3Q9NUV7 552 aa13.39□□□□□ -0.27
USP4-205ENST00000431357 C5P01031 1676 aa13.38□□□□□ -0.27
USP4-205ENST00000431357 PTPN12Q05209 780 aaKnown RBP13.38□□□□□ -0.27
USP4-205ENST00000431357 TPRNQ4KMQ1 711 aa13.38□□□□□ -0.27
USP4-205ENST00000431357 ZNF589Q86UQ0 364 aaPredicted RBP13.38□□□□□ -0.27
USP4-205ENST00000431357 TTC5Q8N0Z6 440 aa13.38□□□□□ -0.27
USP4-205ENST00000431357 NFATC2IPQ8NCF5 419 aa13.37□□□□□ -0.27
USP4-205ENST00000431357 MYRIPQ8NFW9 859 aa13.37□□□□□ -0.27
USP4-205ENST00000431357 KLHDC4Q8TBB5 520 aa13.37□□□□□ -0.27
USP4-205ENST00000431357 SPATA32Q96LK8 384 aa13.37□□□□□ -0.27
USP4-205ENST00000431357 DBNLQ9UJU6 430 aaKnown RBP13.37□□□□□ -0.27
USP4-205ENST00000431357 LRP10Q7Z4F1 713 aa13.37□□□□□ -0.27
USP4-205ENST00000431357 GTF3C6Q969F1 213 aa13.37□□□□□ -0.27
USP4-205ENST00000431357 ZNF496Q96IT1 587 aaPredicted RBP13.37□□□□□ -0.27
USP4-205ENST00000431357 DCAF5Q96JK2 942 aa13.37□□□□□ -0.27
USP4-205ENST00000431357 FMNL2Q96PY5 1086 aa13.37□□□□□ -0.27
USP4-205ENST00000431357 HAUS7Q99871 368 aa13.37□□□□□ -0.27
USP4-205ENST00000431357 ZSCAN16Q9H4T2 348 aaPredicted RBP13.37□□□□□ -0.27
USP4-205ENST00000431357 TTC12Q9H892 705 aaPredicted RBP13.37□□□□□ -0.27
USP4-205ENST00000431357 NLRP2Q9NX02 1062 aa13.37□□□□□ -0.27
USP4-205ENST00000431357 HMGB1P09429 215 aaKnown RBP13.36□□□□□ -0.27
USP4-205ENST00000431357 TFCP2Q12800 502 aa13.36□□□□□ -0.27
USP4-205ENST00000431357 MCMDC2Q4G0Z9 681 aa13.36□□□□□ -0.27
USP4-205ENST00000431357 RBM43Q6ZSC3 357 aaKnown RBP13.36□□□□□ -0.27
USP4-205ENST00000431357 FERMT3Q86UX7 667 aa13.36□□□□□ -0.27
USP4-205ENST00000431357 LEO1Q8WVC0 666 aaPredicted RBP13.36□□□□□ -0.27
USP4-205ENST00000431357 LLPHQ9BRT6 129 aaKnown RBP13.36□□□□□ -0.27
USP4-205ENST00000431357 TNMDQ9H2S6 317 aa13.36□□□□□ -0.27
USP4-205ENST00000431357 FAM13BQ9NYF5 915 aa13.36□□□□□ -0.27
USP4-205ENST00000431357 C1orf167Q5SNV9 1468 aa13.36□□□□□ -0.27
USP4-205ENST00000431357 LIG1P18858 919 aa13.36□□□□□ -0.27
USP4-205ENST00000431357 TYRO3Q06418 890 aa13.36□□□□□ -0.27
USP4-205ENST00000431357 ZNF830Q96NB3 372 aaPredicted RBP13.36□□□□□ -0.27
USP4-205ENST00000431357 CAVIN2O95810 425 aa13.35□□□□□ -0.27
USP4-205ENST00000431357 ZC3H6P61129 1189 aaKnown RBP13.35□□□□□ -0.27
USP4-205ENST00000431357 PLCB2Q00722 1185 aa13.35□□□□□ -0.27
USP4-205ENST00000431357 CHMP4CQ96CF2 233 aa13.35□□□□□ -0.27
USP4-205ENST00000431357 TCEANC2Q96MN5 208 aa13.35□□□□□ -0.27
USP4-205ENST00000431357 CLSTN2Q9H4D0 955 aa13.35□□□□□ -0.27
USP4-205ENST00000431357 MRVI1Q9Y6F6 885 aa13.35□□□□□ -0.27
USP4-205ENST00000431357 RGPD5Q99666 1765 aa13.35□□□□□ -0.27
USP4-205ENST00000431357 ALS2Q96Q42 1657 aa13.35□□□□□ -0.27
USP4-205ENST00000431357 PROSER2Q86WR7 435 aaPredicted RBP13.34□□□□□ -0.27
USP4-205ENST00000431357 PLBD2Q8NHP8 589 aa13.34□□□□□ -0.27
USP4-205ENST00000431357 GPR108Q9NPR9 543 aa13.34□□□□□ -0.27
USP4-205ENST00000431357 DACT1Q9NYF0 836 aa13.34□□□□□ -0.27
USP4-205ENST00000431357 CFAP45Q9UL16 551 aa13.34□□□□□ -0.27
USP4-205ENST00000431357 USP16Q9Y5T5 823 aa13.34□□□□□ -0.27
USP4-205ENST00000431357 TAF6LQ9Y6J9 622 aa13.34□□□□□ -0.27
USP4-205ENST00000431357 SH3TC1Q8TE82 1336 aa13.34□□□□□ -0.27
USP4-205ENST00000431357 GTF2F1P35269 517 aaKnown RBP eCLIP13.34□□□□□ -0.27
USP4-205ENST00000431357 RESTQ13127 1097 aa13.34□□□□□ -0.27
USP4-205ENST00000431357 STK3Q13188 491 aa13.34□□□□□ -0.27
USP4-205ENST00000431357 Q6ZUG5 572 aa13.34□□□□□ -0.27
USP4-205ENST00000431357 UBE3BQ7Z3V4 1068 aa13.34□□□□□ -0.27
USP4-205ENST00000431357 KBTBD3Q8NAB2 608 aa13.34□□□□□ -0.27
USP4-205ENST00000431357 KIAA1524Q8TCG1 905 aa13.34□□□□□ -0.27
USP4-205ENST00000431357 EDC3Q96F86 508 aaKnown RBP13.34□□□□□ -0.27
USP4-205ENST00000431357 C19orf44Q9H6X5 657 aa13.34□□□□□ -0.27
USP4-205ENST00000431357 HELLSQ9NRZ9 838 aa13.34□□□□□ -0.27
USP4-205ENST00000431357 KIF3AQ9Y496 699 aa13.34□□□□□ -0.27
USP4-205ENST00000431357 ZNF609O15014 1411 aa13.34□□□□□ -0.27
USP4-205ENST00000431357 A0A087WZG4 1122 aa13.33□□□□□ -0.28
USP4-205ENST00000431357 H3BQV1 296 aa13.33□□□□□ -0.28
USP4-205ENST00000431357 AP5Z1O43299 807 aa13.33□□□□□ -0.28
USP4-205ENST00000431357 CASP7P55210 303 aa13.33□□□□□ -0.28
USP4-205ENST00000431357 COL9A3Q14050 684 aaPredicted RBP13.33□□□□□ -0.28
USP4-205ENST00000431357 IFFO2Q5TF58 517 aa13.33□□□□□ -0.28
USP4-205ENST00000431357 FAM173BQ6P4H8 233 aa13.33□□□□□ -0.28
USP4-205ENST00000431357 SMARCC2Q8TAQ2 1214 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms