RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 ABCA3Q99758 1704 aa17.07■□□□□ 0.32
LIG1-202ENST00000427526 NHSL1Q5SYE7 1610 aa17.07■□□□□ 0.32
LIG1-202ENST00000427526 ERVV-2B6SEH9 535 aa17.07■□□□□ 0.32
LIG1-202ENST00000427526 PTCD1O75127 700 aaKnown RBP17.07■□□□□ 0.32
LIG1-202ENST00000427526 KLHL34Q8N239 644 aa17.07■□□□□ 0.32
LIG1-202ENST00000427526 TLR7Q9NYK1 1049 aaKnown RBP17.07■□□□□ 0.32
LIG1-202ENST00000427526 METTL22Q9BUU2 404 aaPredicted RBP17.07■□□□□ 0.32
LIG1-202ENST00000427526 NEURL1BA8MQ27 555 aa17.06■□□□□ 0.32
LIG1-202ENST00000427526 JARID2Q92833 1246 aaPredicted RBP17.06■□□□□ 0.32
LIG1-202ENST00000427526 TPCN1Q9ULQ1 816 aa17.06■□□□□ 0.32
LIG1-202ENST00000427526 NEXNQ0ZGT2 675 aa17.06■□□□□ 0.32
LIG1-202ENST00000427526 SLC27A2O14975 620 aa17.05■□□□□ 0.32
LIG1-202ENST00000427526 COL9A3Q14050 684 aaPredicted RBP17.05■□□□□ 0.32
LIG1-202ENST00000427526 NBPF26B4DH59 902 aa17.05■□□□□ 0.32
LIG1-202ENST00000427526 FIBPO43427 364 aa17.05■□□□□ 0.32
LIG1-202ENST00000427526 DNM1Q05193 864 aaKnown RBP17.05■□□□□ 0.32
LIG1-202ENST00000427526 NBPF14Q5TI25 921 aa17.05■□□□□ 0.32
LIG1-202ENST00000427526 NBPF10Q6P3W6 841 aaKnown RBP17.05■□□□□ 0.32
LIG1-202ENST00000427526 NBPF15Q8N660 670 aa17.05■□□□□ 0.32
LIG1-202ENST00000427526 A0A0D9SFI3 127 aa17.05■□□□□ 0.32
LIG1-202ENST00000427526 DTNBO60941 627 aa17.05■□□□□ 0.32
LIG1-202ENST00000427526 GCKRQ14397 625 aa17.05■□□□□ 0.32
LIG1-202ENST00000427526 FUCA2Q9BTY2 467 aa17.05■□□□□ 0.32
LIG1-202ENST00000427526 PARP4Q9UKK3 1724 aaKnown RBP17.04■□□□□ 0.32
LIG1-202ENST00000427526 BOLA2Q9H3K6 86 aa17.04■□□□□ 0.32
LIG1-202ENST00000427526 MED23Q9ULK4 1368 aa17.04■□□□□ 0.32
LIG1-202ENST00000427526 CSPP1Q1MSJ5 1256 aa17.04■□□□□ 0.32
LIG1-202ENST00000427526 NECAB1Q8N987 351 aa17.04■□□□□ 0.32
LIG1-202ENST00000427526 KLHDC4Q8TBB5 520 aa17.04■□□□□ 0.32
LIG1-202ENST00000427526 ALDH8A1Q9H2A2 487 aaPredicted RBP17.04■□□□□ 0.32
LIG1-202ENST00000427526 JCADQ9P266 1359 aa17.04■□□□□ 0.32
LIG1-202ENST00000427526 ATP5J2-PTCD1G3V325 749 aa17.03■□□□□ 0.32
LIG1-202ENST00000427526 PSMA5P28066 241 aa17.03■□□□□ 0.32
LIG1-202ENST00000427526 EPHA10Q5JZY3 1008 aa17.03■□□□□ 0.32
LIG1-202ENST00000427526 SIL1Q9H173 461 aa17.03■□□□□ 0.32
LIG1-202ENST00000427526 A1BGP04217 495 aa17.03■□□□□ 0.32
LIG1-202ENST00000427526 R3HCC1Q9Y3T6 440 aaKnown RBP17.03■□□□□ 0.32
LIG1-202ENST00000427526 PDIA4P13667 645 aaKnown RBP17.02■□□□□ 0.32
LIG1-202ENST00000427526 HCLS1P14317 486 aaPredicted RBP17.02■□□□□ 0.32
LIG1-202ENST00000427526 KCNJ4P48050 445 aa17.02■□□□□ 0.32
LIG1-202ENST00000427526 TSGA10IPQ3SY00 556 aa17.02■□□□□ 0.32
LIG1-202ENST00000427526 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.02■□□□□ 0.32
LIG1-202ENST00000427526 FSD1Q9BTV5 496 aa17.02■□□□□ 0.31
LIG1-202ENST00000427526 TAF6LQ9Y6J9 622 aa17.02■□□□□ 0.31
LIG1-202ENST00000427526 USP25Q9UHP3 1055 aa17.01■□□□□ 0.31
LIG1-202ENST00000427526 RNF20Q5VTR2 975 aa17.01■□□□□ 0.31
LIG1-202ENST00000427526 TTLL7Q6ZT98 887 aa17.01■□□□□ 0.31
LIG1-202ENST00000427526 COPRSQ9NQ92 184 aa17.01■□□□□ 0.31
LIG1-202ENST00000427526 GLI3P10071 1580 aa17.01■□□□□ 0.31
LIG1-202ENST00000427526 PTMAP06454 111 aaKnown RBP17■□□□□ 0.31
LIG1-202ENST00000427526 RPS6KB1P23443 525 aa17■□□□□ 0.31
LIG1-202ENST00000427526 LARP1BQ659C4 914 aaKnown RBP17■□□□□ 0.31
LIG1-202ENST00000427526 ZNF589Q86UQ0 364 aaPredicted RBP17■□□□□ 0.31
LIG1-202ENST00000427526 VPS37CA5D8V6 355 aaPredicted RBP17■□□□□ 0.31
LIG1-202ENST00000427526 RFX5P48382 616 aaPredicted RBP17■□□□□ 0.31
LIG1-202ENST00000427526 TOB2Q14106 344 aaPredicted RBP17■□□□□ 0.31
LIG1-202ENST00000427526 ANKRD1Q15327 319 aa17■□□□□ 0.31
LIG1-202ENST00000427526 BLOC1S2Q6QNY1 142 aa17■□□□□ 0.31
LIG1-202ENST00000427526 TMOD3Q9NYL9 352 aa17■□□□□ 0.31
LIG1-202ENST00000427526 TPRNQ4KMQ1 711 aa16.99■□□□□ 0.31
LIG1-202ENST00000427526 USPL1Q5W0Q7 1092 aa16.99■□□□□ 0.31
LIG1-202ENST00000427526 GIMAP6Q6P9H5 292 aa16.99■□□□□ 0.31
LIG1-202ENST00000427526 PLBD2Q8NHP8 589 aa16.99■□□□□ 0.31
LIG1-202ENST00000427526 KDM4AO75164 1064 aa16.99■□□□□ 0.31
LIG1-202ENST00000427526 TAF5LO75529 589 aa16.99■□□□□ 0.31
LIG1-202ENST00000427526 ADCY5O95622 1261 aa16.99■□□□□ 0.31
LIG1-202ENST00000427526 UBE3BQ7Z3V4 1068 aa16.99■□□□□ 0.31
LIG1-202ENST00000427526 ASAP1Q9ULH1 1129 aa16.99■□□□□ 0.31
LIG1-202ENST00000427526 PIGBQ92521 554 aa16.99■□□□□ 0.31
LIG1-202ENST00000427526 HMG20BQ9P0W2 317 aa16.99■□□□□ 0.31
LIG1-202ENST00000427526 ROBO1Q9Y6N7 1651 aa16.98■□□□□ 0.31
LIG1-202ENST00000427526 ATP5JP18859 108 aa16.98■□□□□ 0.31
LIG1-202ENST00000427526 PTPN12Q05209 780 aaKnown RBP16.98■□□□□ 0.31
LIG1-202ENST00000427526 CDC37L1Q7L3B6 337 aa16.98■□□□□ 0.31
LIG1-202ENST00000427526 KCPQ6ZWJ8 1503 aa16.98■□□□□ 0.31
LIG1-202ENST00000427526 EDC3Q96F86 508 aaKnown RBP16.98■□□□□ 0.31
LIG1-202ENST00000427526 DBNLQ9UJU6 430 aaKnown RBP16.98■□□□□ 0.31
LIG1-202ENST00000427526 SHANK3Q9BYB0 1731 aa16.98■□□□□ 0.31
LIG1-202ENST00000427526 COL15A1P39059 1388 aa16.97■□□□□ 0.31
LIG1-202ENST00000427526 ELP1O95163 1332 aa16.97■□□□□ 0.31
LIG1-202ENST00000427526 A0A087WZG4 1122 aa16.97■□□□□ 0.31
LIG1-202ENST00000427526 PDCP20941 246 aa16.97■□□□□ 0.31
LIG1-202ENST00000427526 KIAA2012Q0VF49 1180 aa16.97■□□□□ 0.31
LIG1-202ENST00000427526 RABL6Q3YEC7 729 aaPredicted RBP16.97■□□□□ 0.31
LIG1-202ENST00000427526 TTC6Q86TZ1 520 aa16.97■□□□□ 0.31
LIG1-202ENST00000427526 TCEANC2Q96MN5 208 aa16.97■□□□□ 0.31
LIG1-202ENST00000427526 ADAMTS2O95450 1211 aa16.97■□□□□ 0.31
LIG1-202ENST00000427526 TNNI3KQ59H18 835 aa16.96■□□□□ 0.31
LIG1-202ENST00000427526 FPGT-TNNI3KV9GXZ4 949 aa16.96■□□□□ 0.31
LIG1-202ENST00000427526 KRT85P78386 507 aa16.96■□□□□ 0.31
LIG1-202ENST00000427526 ZBTB3Q9H5J0 574 aa16.96■□□□□ 0.31
LIG1-202ENST00000427526 TFCP2Q12800 502 aa16.95■□□□□ 0.3
LIG1-202ENST00000427526 PDCL3Q9H2J4 239 aa16.95■□□□□ 0.3
LIG1-202ENST00000427526 BCL11BQ9C0K0 894 aaPredicted RBP16.95■□□□□ 0.3
LIG1-202ENST00000427526 ZNF330Q9Y3S2 320 aaPredicted RBP16.95■□□□□ 0.3
LIG1-202ENST00000427526 TNS2Q63HR2 1409 aa16.95■□□□□ 0.3
LIG1-202ENST00000427526 AP5Z1O43299 807 aa16.94■□□□□ 0.3
LIG1-202ENST00000427526 FAM173BQ6P4H8 233 aa16.94■□□□□ 0.3
LIG1-202ENST00000427526 FERMT3Q86UX7 667 aa16.94■□□□□ 0.3
LIG1-202ENST00000427526 PIBF1Q8WXW3 757 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms