RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 QTRT2Q9H974 415 aaKnown RBP10.71□□□□□ -0.69
LINC01040-201ENST00000425048 FRRS1LQ9P0K9 344 aa10.71□□□□□ -0.69
LINC01040-201ENST00000425048 H2AFB1P0C5Y9 115 aa10.7□□□□□ -0.7
LINC01040-201ENST00000425048 H2AFB2P0C5Z0 115 aa10.7□□□□□ -0.7
LINC01040-201ENST00000425048 MSL1Q68DK7 614 aa10.7□□□□□ -0.7
LINC01040-201ENST00000425048 SHISA2Q6UWI4 295 aa10.7□□□□□ -0.7
LINC01040-201ENST00000425048 DHX32Q7L7V1 743 aaKnown RBP10.7□□□□□ -0.7
LINC01040-201ENST00000425048 KRT25Q7Z3Z0 450 aa10.7□□□□□ -0.7
LINC01040-201ENST00000425048 TRPM4Q8TD43 1214 aa10.7□□□□□ -0.7
LINC01040-201ENST00000425048 MYO19Q96H55 970 aa10.7□□□□□ -0.7
LINC01040-201ENST00000425048 ZFATQ9P243 1243 aa10.7□□□□□ -0.7
LINC01040-201ENST00000425048 ARID4AP29374 1257 aaPredicted RBP10.69□□□□□ -0.7
LINC01040-201ENST00000425048 PRSS36Q5K4E3 855 aa10.69□□□□□ -0.7
LINC01040-201ENST00000425048 ELMSAN1Q6PJG2 1045 aa10.69□□□□□ -0.7
LINC01040-201ENST00000425048 DTWD1Q8N5C7 304 aa10.69□□□□□ -0.7
LINC01040-201ENST00000425048 IFT43Q96FT9 208 aa10.69□□□□□ -0.7
LINC01040-201ENST00000425048 USP21Q9UK80 565 aa10.69□□□□□ -0.7
LINC01040-201ENST00000425048 SCO2A0A1W2PP80 73 aa10.68□□□□□ -0.7
LINC01040-201ENST00000425048 ZBTB42B2RXF5 422 aa10.68□□□□□ -0.7
LINC01040-201ENST00000425048 SASH3O75995 380 aa10.68□□□□□ -0.7
LINC01040-201ENST00000425048 RARAP10276 462 aa10.68□□□□□ -0.7
LINC01040-201ENST00000425048 LPIN3Q9BQK8 851 aa10.68□□□□□ -0.7
LINC01040-201ENST00000425048 RFX1P22670 979 aa10.67□□□□□ -0.7
LINC01040-201ENST00000425048 PERM1Q5SV97 790 aa10.67□□□□□ -0.7
LINC01040-201ENST00000425048 TTC9Q92623 222 aa10.67□□□□□ -0.7
LINC01040-201ENST00000425048 OPLAHO14841 1288 aa10.66□□□□□ -0.7
LINC01040-201ENST00000425048 GPLD1P80108 840 aa10.66□□□□□ -0.7
LINC01040-201ENST00000425048 CFAP70Q5T0N1 1121 aa10.66□□□□□ -0.7
LINC01040-201ENST00000425048 FBXO11Q86XK2 927 aa10.66□□□□□ -0.7
LINC01040-201ENST00000425048 GRIK5Q16478 980 aa10.65□□□□□ -0.7
LINC01040-201ENST00000425048 FOXD4L6Q3SYB3 417 aaPredicted RBP10.65□□□□□ -0.7
LINC01040-201ENST00000425048 FOXD4L3Q6VB84 417 aaPredicted RBP10.65□□□□□ -0.7
LINC01040-201ENST00000425048 WFDC8Q8IUA0 241 aa10.65□□□□□ -0.7
LINC01040-201ENST00000425048 TP53INP1Q96A56 240 aa10.65□□□□□ -0.7
LINC01040-201ENST00000425048 RTCBQ9Y3I0 505 aaKnown RBP10.65□□□□□ -0.7
LINC01040-201ENST00000425048 MLLT1Q03111 559 aaPredicted RBP10.64□□□□□ -0.71
LINC01040-201ENST00000425048 CDCA8Q53HL2 280 aa10.64□□□□□ -0.71
LINC01040-201ENST00000425048 ZNF777Q9ULD5 760 aaPredicted RBP10.64□□□□□ -0.71
LINC01040-201ENST00000425048 EGFRP00533 1210 aa10.63□□□□□ -0.71
LINC01040-201ENST00000425048 NRLP54845 237 aa10.63□□□□□ -0.71
LINC01040-201ENST00000425048 TLR7Q9NYK1 1049 aaKnown RBP10.63□□□□□ -0.71
LINC01040-201ENST00000425048 LRFN2Q9ULH4 789 aa10.63□□□□□ -0.71
LINC01040-201ENST00000425048 CMTR1Q8N1G2 835 aaKnown RBP10.62□□□□□ -0.71
LINC01040-201ENST00000425048 XYLBO75191 536 aa10.61□□□□□ -0.71
LINC01040-201ENST00000425048 PLAURQ03405 335 aa10.61□□□□□ -0.71
LINC01040-201ENST00000425048 ARTNQ5T4W7 220 aa10.61□□□□□ -0.71
LINC01040-201ENST00000425048 IGF2-ASQ6U949 168 aa10.61□□□□□ -0.71
LINC01040-201ENST00000425048 HFE2Q6ZVN8 426 aa10.61□□□□□ -0.71
LINC01040-201ENST00000425048 TREML1Q86YW5 311 aa10.61□□□□□ -0.71
LINC01040-201ENST00000425048 RGL4Q8IZJ4 473 aa10.61□□□□□ -0.71
LINC01040-201ENST00000425048 WFDC12Q8WWY7 111 aa10.61□□□□□ -0.71
LINC01040-201ENST00000425048 SSBP4Q9BWG4 385 aaPredicted RBP10.61□□□□□ -0.71
LINC01040-201ENST00000425048 SMG9Q9H0W8 520 aaKnown RBP10.61□□□□□ -0.71
LINC01040-201ENST00000425048 ZFP64Q9NPA5 681 aa10.61□□□□□ -0.71
LINC01040-201ENST00000425048 NOVA2Q9UNW9 492 aaKnown RBP10.61□□□□□ -0.71
LINC01040-201ENST00000425048 USP20Q9Y2K6 914 aa10.61□□□□□ -0.71
LINC01040-201ENST00000425048 LOC102724428A0A0B4J2F2 783 aa10.59□□□□□ -0.71
LINC01040-201ENST00000425048 IREB2P48200 963 aaKnown RBP10.59□□□□□ -0.71
LINC01040-201ENST00000425048 SIK1P57059 783 aa10.59□□□□□ -0.71
LINC01040-201ENST00000425048 SWI5Q1ZZU3 235 aa10.59□□□□□ -0.71
LINC01040-201ENST00000425048 COX20Q5RI15 118 aa10.59□□□□□ -0.71
LINC01040-201ENST00000425048 PSAPP07602 524 aa10.58□□□□□ -0.72
LINC01040-201ENST00000425048 EIF2AK2P19525 551 aaKnown RBP10.58□□□□□ -0.72
LINC01040-201ENST00000425048 FKBP5Q13451 457 aaPredicted RBP10.58□□□□□ -0.72
LINC01040-201ENST00000425048 PRIMPOLQ96LW4 560 aa10.58□□□□□ -0.72
LINC01040-201ENST00000425048 ACIN1Q9UKV3 1341 aaKnown RBP10.57□□□□□ -0.72
LINC01040-201ENST00000425048 J3QW42 95 aa10.56□□□□□ -0.72
LINC01040-201ENST00000425048 PLD4Q96BZ4 506 aa10.56□□□□□ -0.72
LINC01040-201ENST00000425048 PSMG3-AS1Q96PY0 264 aa10.56□□□□□ -0.72
LINC01040-201ENST00000425048 KRTAP4-8Q9BYQ9 185 aa10.56□□□□□ -0.72
LINC01040-201ENST00000425048 KCNMB2Q9Y691 235 aa10.56□□□□□ -0.72
LINC01040-201ENST00000425048 MMP20O60882 483 aa10.55□□□□□ -0.72
LINC01040-201ENST00000425048 GHRHP01286 108 aa10.55□□□□□ -0.72
LINC01040-201ENST00000425048 BRD2P25440 801 aaKnown RBP10.55□□□□□ -0.72
LINC01040-201ENST00000425048 NOS3P29474 1203 aa10.55□□□□□ -0.72
LINC01040-201ENST00000425048 NBPF11Q86T75 865 aa10.55□□□□□ -0.72
LINC01040-201ENST00000425048 RBSNQ9H1K0 784 aa10.55□□□□□ -0.72
LINC01040-201ENST00000425048 DLL1O00548 723 aa10.54□□□□□ -0.72
LINC01040-201ENST00000425048 PRMT3O60678 531 aa10.54□□□□□ -0.72
LINC01040-201ENST00000425048 DEAF1O75398 565 aaPredicted RBP10.54□□□□□ -0.72
LINC01040-201ENST00000425048 SOX18P35713 384 aa10.53□□□□□ -0.72
LINC01040-201ENST00000425048 ELOAQ14241 798 aaKnown RBP10.53□□□□□ -0.72
LINC01040-201ENST00000425048 C16orf46Q6P387 395 aa10.53□□□□□ -0.72
LINC01040-201ENST00000425048 LRP8Q14114 963 aa10.52□□□□□ -0.73
LINC01040-201ENST00000425048 GDF6Q6KF10 455 aaPredicted RBP10.52□□□□□ -0.73
LINC01040-201ENST00000425048 NLRP13Q86W25 1043 aa10.52□□□□□ -0.73
LINC01040-201ENST00000425048 ETFBKMTQ8IXQ9 262 aa10.52□□□□□ -0.73
LINC01040-201ENST00000425048 IL22RA1Q8N6P7 574 aa10.52□□□□□ -0.73
LINC01040-201ENST00000425048 NSUN5Q96P11 429 aaKnown RBP10.52□□□□□ -0.73
LINC01040-201ENST00000425048 HOXD8P13378 290 aaPredicted RBP10.51□□□□□ -0.73
LINC01040-201ENST00000425048 OCLNQ16625 522 aa10.51□□□□□ -0.73
LINC01040-201ENST00000425048 COL26A1Q96A83 441 aa10.51□□□□□ -0.73
LINC01040-201ENST00000425048 SAP130Q9H0E3 1048 aa10.51□□□□□ -0.73
LINC01040-201ENST00000425048 FAM13BQ9NYF5 915 aa10.51□□□□□ -0.73
LINC01040-201ENST00000425048 CACTIN-AS1Q8N1I8 211 aa10.5□□□□□ -0.73
LINC01040-201ENST00000425048 TMEM130Q8N3G9 435 aa10.5□□□□□ -0.73
LINC01040-201ENST00000425048 DCAF11Q8TEB1 546 aa10.5□□□□□ -0.73
LINC01040-201ENST00000425048 PIK3R5Q8WYR1 880 aa10.5□□□□□ -0.73
LINC01040-201ENST00000425048 MEGF10Q96KG7 1140 aa10.5□□□□□ -0.73
LINC01040-201ENST00000425048 MRPL18Q9H0U6 180 aaKnown RBP10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms