RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 EVI5LQ96CN4 794 aa12.57□□□□□ -0.4
USP54-204ENST00000422491 OSBPL5Q9H0X9 879 aaPredicted RBP12.57□□□□□ -0.4
USP54-204ENST00000422491 NEO1Q92859 1461 aa12.56□□□□□ -0.4
USP54-204ENST00000422491 CTAGE5O15320 804 aa12.56□□□□□ -0.4
USP54-204ENST00000422491 GSDMDP57764 484 aa12.56□□□□□ -0.4
USP54-204ENST00000422491 SNW1Q13573 536 aaKnown RBP12.56□□□□□ -0.4
USP54-204ENST00000422491 NBPF11Q86T75 865 aa12.56□□□□□ -0.4
USP54-204ENST00000422491 FAM227BQ96M60 508 aa12.56□□□□□ -0.4
USP54-204ENST00000422491 TAF6LQ9Y6J9 622 aa12.56□□□□□ -0.4
USP54-204ENST00000422491 ZRANB2O95218 330 aaKnown RBP eCLIP12.56□□□□□ -0.4
USP54-204ENST00000422491 BECN2A8MW95 431 aa12.55□□□□□ -0.4
USP54-204ENST00000422491 CLASRPQ8N2M8 674 aaKnown RBP12.55□□□□□ -0.4
USP54-204ENST00000422491 PPP1R13BQ96KQ4 1090 aa12.55□□□□□ -0.4
USP54-204ENST00000422491 RICTORQ6R327 1708 aa12.55□□□□□ -0.4
USP54-204ENST00000422491 JAK2O60674 1132 aa12.55□□□□□ -0.4
USP54-204ENST00000422491 NMIQ13287 307 aaPredicted RBP12.55□□□□□ -0.4
USP54-204ENST00000422491 IGSF1Q8N6C5 1336 aa12.55□□□□□ -0.4
USP54-204ENST00000422491 ADD1P35611 737 aaKnown RBP12.54□□□□□ -0.4
USP54-204ENST00000422491 STK3Q13188 491 aa12.54□□□□□ -0.4
USP54-204ENST00000422491 BRF1Q92994 677 aa12.54□□□□□ -0.4
USP54-204ENST00000422491 GOLPH3LQ9H4A5 285 aa12.54□□□□□ -0.4
USP54-204ENST00000422491 IMPACTQ9P2X3 320 aa12.54□□□□□ -0.4
USP54-204ENST00000422491 CFAP45Q9UL16 551 aa12.54□□□□□ -0.4
USP54-204ENST00000422491 A0A087WWV3 80 aa12.54□□□□□ -0.4
USP54-204ENST00000422491 MTX1Q13505 466 aa12.54□□□□□ -0.4
USP54-204ENST00000422491 BEND3Q5T5X7 828 aa12.54□□□□□ -0.4
USP54-204ENST00000422491 HDGFL1Q5TGJ6 251 aa12.54□□□□□ -0.4
USP54-204ENST00000422491 SYT10Q6XYQ8 523 aa12.54□□□□□ -0.4
USP54-204ENST00000422491 TSPYL1Q9H0U9 437 aa12.54□□□□□ -0.4
USP54-204ENST00000422491 ZSCAN16Q9H4T2 348 aaPredicted RBP12.54□□□□□ -0.4
USP54-204ENST00000422491 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.54□□□□□ -0.4
USP54-204ENST00000422491 TECPR2O15040 1411 aa12.54□□□□□ -0.4
USP54-204ENST00000422491 JCADQ9P266 1359 aa12.53□□□□□ -0.4
USP54-204ENST00000422491 PSDA5PKW4 1024 aaPredicted RBP12.53□□□□□ -0.4
USP54-204ENST00000422491 KCNJ6P48051 423 aa12.53□□□□□ -0.4
USP54-204ENST00000422491 OS9Q13438 667 aaPredicted RBP12.53□□□□□ -0.4
USP54-204ENST00000422491 ARHGAP29Q52LW3 1261 aa12.53□□□□□ -0.4
USP54-204ENST00000422491 DDX11Q96FC9 970 aa12.53□□□□□ -0.4
USP54-204ENST00000422491 EYA1Q99502 592 aa12.53□□□□□ -0.4
USP54-204ENST00000422491 ANO10Q9NW15 660 aa12.53□□□□□ -0.4
USP54-204ENST00000422491 USP6P35125 1406 aa12.53□□□□□ -0.4
USP54-204ENST00000422491 GNAT3A8MTJ3 354 aa12.53□□□□□ -0.4
USP54-204ENST00000422491 RAD51AP2Q09MP3 1159 aa12.53□□□□□ -0.4
USP54-204ENST00000422491 TSGA10IPQ3SY00 556 aa12.53□□□□□ -0.4
USP54-204ENST00000422491 CCAR1Q8IX12 1150 aaKnown RBP12.53□□□□□ -0.4
USP54-204ENST00000422491 ENGASEQ8NFI3 743 aa12.53□□□□□ -0.4
USP54-204ENST00000422491 GPATCH3Q96I76 525 aa12.53□□□□□ -0.4
USP54-204ENST00000422491 FEZ2Q9UHY8 353 aaPredicted RBP12.53□□□□□ -0.4
USP54-204ENST00000422491 MED23Q9ULK4 1368 aa12.53□□□□□ -0.4
USP54-204ENST00000422491 MYH15Q9Y2K3 1946 aa12.53□□□□□ -0.4
USP54-204ENST00000422491 ACEP12821 1306 aa12.53□□□□□ -0.4
USP54-204ENST00000422491 HIP1O00291 1037 aa12.52□□□□□ -0.4
USP54-204ENST00000422491 ARMCX5Q6P1M9 558 aa12.52□□□□□ -0.4
USP54-204ENST00000422491 AOPEPQ8N6M6 819 aa12.52□□□□□ -0.4
USP54-204ENST00000422491 IL17REQ8NFR9 667 aa12.52□□□□□ -0.4
USP54-204ENST00000422491 SIRT1Q96EB6 747 aa12.52□□□□□ -0.4
USP54-204ENST00000422491 BABAM1Q9NWV8 329 aa12.52□□□□□ -0.4
USP54-204ENST00000422491 RCOR1Q9UKL0 485 aa12.52□□□□□ -0.4
USP54-204ENST00000422491 FLT4P35916 1363 aa12.52□□□□□ -0.4
USP54-204ENST00000422491 TOPAZ1Q8N9V7 1692 aa12.52□□□□□ -0.41
USP54-204ENST00000422491 A0A0D9SFI3 127 aa12.52□□□□□ -0.41
USP54-204ENST00000422491 CEP57L1Q8IYX8 460 aa12.52□□□□□ -0.41
USP54-204ENST00000422491 UBXN6Q9BZV1 441 aa12.52□□□□□ -0.41
USP54-204ENST00000422491 SBNO1A3KN83 1393 aa12.52□□□□□ -0.41
USP54-204ENST00000422491 SOX12O15370 315 aa12.52□□□□□ -0.41
USP54-204ENST00000422491 TUBB4AP04350 444 aa12.52□□□□□ -0.41
USP54-204ENST00000422491 IFIT2P09913 472 aaKnown RBP12.52□□□□□ -0.41
USP54-204ENST00000422491 SYTL4Q96C24 671 aaPredicted RBP12.52□□□□□ -0.41
USP54-204ENST00000422491 ORC3Q9UBD5 711 aaPredicted RBP12.52□□□□□ -0.41
USP54-204ENST00000422491 TAF7Q15545 349 aaPredicted RBP12.51□□□□□ -0.41
USP54-204ENST00000422491 MUM1L1Q5H9M0 696 aa12.51□□□□□ -0.41
USP54-204ENST00000422491 CCDC150Q8NCX0 1101 aa12.51□□□□□ -0.41
USP54-204ENST00000422491 TRERF1Q96PN7 1200 aa12.51□□□□□ -0.41
USP54-204ENST00000422491 FTOQ9C0B1 505 aaKnown RBP eCLIP12.51□□□□□ -0.41
USP54-204ENST00000422491 HMG20BQ9P0W2 317 aa12.51□□□□□ -0.41
USP54-204ENST00000422491 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.51□□□□□ -0.41
USP54-204ENST00000422491 H3BQV1 296 aa12.51□□□□□ -0.41
USP54-204ENST00000422491 CEBPZQ03701 1054 aaKnown RBP12.51□□□□□ -0.41
USP54-204ENST00000422491 IFFO2Q5TF58 517 aa12.51□□□□□ -0.41
USP54-204ENST00000422491 DNAAF4Q8WXU2 420 aa12.51□□□□□ -0.41
USP54-204ENST00000422491 TRIM34Q9BYJ4 488 aa12.51□□□□□ -0.41
USP54-204ENST00000422491 KINO60870 393 aaKnown RBP12.5□□□□□ -0.41
USP54-204ENST00000422491 FAM160A1Q05DH4 1040 aa12.5□□□□□ -0.41
USP54-204ENST00000422491 TMCO3Q6UWJ1 677 aa12.5□□□□□ -0.41
USP54-204ENST00000422491 NFATC2IPQ8NCF5 419 aa12.5□□□□□ -0.41
USP54-204ENST00000422491 NEK11Q8NG66 645 aa12.5□□□□□ -0.41
USP54-204ENST00000422491 PLEKHG3A1L390 1219 aa12.5□□□□□ -0.41
USP54-204ENST00000422491 PI4KAP2A4QPH2 592 aa12.5□□□□□ -0.41
USP54-204ENST00000422491 TPM4P67936 248 aa12.5□□□□□ -0.41
USP54-204ENST00000422491 MAPK8IP2Q13387 824 aaPredicted RBP12.5□□□□□ -0.41
USP54-204ENST00000422491 TEX35Q5T0J7 233 aa12.5□□□□□ -0.41
USP54-204ENST00000422491 CYB5RLQ6IPT4 315 aa12.5□□□□□ -0.41
USP54-204ENST00000422491 CCDC73Q6ZRK6 1079 aa12.5□□□□□ -0.41
USP54-204ENST00000422491 AACSQ86V21 672 aa12.5□□□□□ -0.41
USP54-204ENST00000422491 ERC1Q8IUD2 1116 aa12.5□□□□□ -0.41
USP54-204ENST00000422491 PI4KAP1Q8N8J0 262 aa12.5□□□□□ -0.41
USP54-204ENST00000422491 ARGLU1Q9NWB6 273 aaPredicted RBP12.5□□□□□ -0.41
USP54-204ENST00000422491 PHLPP2Q6ZVD8 1323 aa12.49□□□□□ -0.41
USP54-204ENST00000422491 NPM1P06748 294 aaKnown RBP eCLIP12.49□□□□□ -0.41
USP54-204ENST00000422491 ETF1P62495 437 aaKnown RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms