RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 RTL5Q5HYW3 569 aaPredicted RBP10.63□□□□□ -0.71
VIM-202ENST00000421459 SP8Q8IXZ3 490 aa10.63□□□□□ -0.71
VIM-202ENST00000421459 MPNDQ8N594 471 aa10.63□□□□□ -0.71
VIM-202ENST00000421459 TRPM4Q8TD43 1214 aa10.63□□□□□ -0.71
VIM-202ENST00000421459 ADARB2Q9NS39 739 aaKnown RBP10.63□□□□□ -0.71
VIM-202ENST00000421459 CHPF2Q9P2E5 772 aa10.63□□□□□ -0.71
VIM-202ENST00000421459 TRIM35Q9UPQ4 493 aa10.63□□□□□ -0.71
VIM-202ENST00000421459 ZBTB12Q9Y330 459 aaPredicted RBP10.63□□□□□ -0.71
VIM-202ENST00000421459 CHL1O00533 1208 aa10.62□□□□□ -0.71
VIM-202ENST00000421459 BBOX1O75936 387 aa10.62□□□□□ -0.71
VIM-202ENST00000421459 CELF2O95319 508 aaKnown RBP10.62□□□□□ -0.71
VIM-202ENST00000421459 MAP2K1Q02750 393 aaPredicted RBP10.62□□□□□ -0.71
VIM-202ENST00000421459 CIAPIN1Q6FI81 312 aa10.62□□□□□ -0.71
VIM-202ENST00000421459 DDX46Q7L014 1031 aaKnown RBP10.62□□□□□ -0.71
VIM-202ENST00000421459 FAM89AQ96GI7 184 aa10.62□□□□□ -0.71
VIM-202ENST00000421459 TMX4Q9H1E5 349 aaPredicted RBP10.62□□□□□ -0.71
VIM-202ENST00000421459 ZNF408Q9H9D4 720 aa10.62□□□□□ -0.71
VIM-202ENST00000421459 KCNQ5Q9NR82 932 aa10.62□□□□□ -0.71
VIM-202ENST00000421459 TLL2Q9Y6L7 1015 aa10.62□□□□□ -0.71
VIM-202ENST00000421459 RIMBP2O15034 1052 aa10.61□□□□□ -0.71
VIM-202ENST00000421459 KIAA2012Q0VF49 1180 aa10.61□□□□□ -0.71
VIM-202ENST00000421459 DDX10Q13206 875 aaKnown RBP10.61□□□□□ -0.71
VIM-202ENST00000421459 GRAPQ13588 217 aa10.61□□□□□ -0.71
VIM-202ENST00000421459 SUPT20HQ8NEM7 779 aa10.61□□□□□ -0.71
VIM-202ENST00000421459 GRAPLQ8TC17 118 aaPredicted RBP10.61□□□□□ -0.71
VIM-202ENST00000421459 CELF1Q92879 486 aaKnown RBP10.61□□□□□ -0.71
VIM-202ENST00000421459 ABHD8Q96I13 439 aa10.61□□□□□ -0.71
VIM-202ENST00000421459 ZIC5Q96T25 663 aa10.61□□□□□ -0.71
VIM-202ENST00000421459 BCL2L13Q9BXK5 485 aa10.61□□□□□ -0.71
VIM-202ENST00000421459 SH3TC1Q8TE82 1336 aa10.6□□□□□ -0.71
VIM-202ENST00000421459 COL4A1P02462 1669 aa10.6□□□□□ -0.71
VIM-202ENST00000421459 EGFRP00533 1210 aa10.6□□□□□ -0.71
VIM-202ENST00000421459 DOK7Q18PE1 504 aa10.6□□□□□ -0.71
VIM-202ENST00000421459 HSP90AB3PQ58FF7 597 aa10.6□□□□□ -0.71
VIM-202ENST00000421459 HDGFL1Q5TGJ6 251 aa10.6□□□□□ -0.71
VIM-202ENST00000421459 SAMD7Q7Z3H4 446 aa10.6□□□□□ -0.71
VIM-202ENST00000421459 SAPCD2Q86UD0 394 aa10.6□□□□□ -0.71
VIM-202ENST00000421459 USP48Q86UV5 1035 aa10.6□□□□□ -0.71
VIM-202ENST00000421459 VPS33BQ9H267 617 aa10.6□□□□□ -0.71
VIM-202ENST00000421459 DBNDD1Q9H9R9 158 aa10.6□□□□□ -0.71
VIM-202ENST00000421459 BABAM1Q9NWV8 329 aa10.6□□□□□ -0.71
VIM-202ENST00000421459 POLLQ9UGP5 575 aa10.6□□□□□ -0.71
VIM-202ENST00000421459 PGAP2Q9UHJ9 254 aa10.6□□□□□ -0.71
VIM-202ENST00000421459 CNOT7Q9UIV1 285 aaKnown RBP10.6□□□□□ -0.71
VIM-202ENST00000421459 PSMD14O00487 310 aa10.59□□□□□ -0.71
VIM-202ENST00000421459 ECE1P42892 770 aa10.59□□□□□ -0.71
VIM-202ENST00000421459 GPSM2P81274 684 aa10.59□□□□□ -0.71
VIM-202ENST00000421459 LMOD3Q0VAK6 560 aa10.59□□□□□ -0.71
VIM-202ENST00000421459 RALBP1Q15311 655 aa10.59□□□□□ -0.71
VIM-202ENST00000421459 RBM26Q5T8P6 1007 aaKnown RBP10.59□□□□□ -0.71
VIM-202ENST00000421459 ANKRD13DQ6ZTN6 518 aa10.59□□□□□ -0.71
VIM-202ENST00000421459 MICALL2Q8IY33 904 aa10.59□□□□□ -0.71
VIM-202ENST00000421459 JARID2Q92833 1246 aaPredicted RBP10.59□□□□□ -0.71
VIM-202ENST00000421459 ISCA1Q9BUE6 129 aa10.59□□□□□ -0.71
VIM-202ENST00000421459 NSFL1CQ9UNZ2 370 aaKnown RBP10.59□□□□□ -0.71
VIM-202ENST00000421459 ADAMTS8Q9UP79 889 aa10.59□□□□□ -0.71
VIM-202ENST00000421459 CCDC85CA6NKD9 419 aa10.58□□□□□ -0.72
VIM-202ENST00000421459 TNIP1Q15025 636 aa10.58□□□□□ -0.72
VIM-202ENST00000421459 TBC1D10BQ4KMP7 808 aaPredicted RBP10.58□□□□□ -0.72
VIM-202ENST00000421459 PLBD2Q8NHP8 589 aa10.58□□□□□ -0.72
VIM-202ENST00000421459 RUNDC1Q96C34 613 aa10.58□□□□□ -0.72
VIM-202ENST00000421459 DUOX1Q9NRD9 1551 aa10.57□□□□□ -0.72
VIM-202ENST00000421459 C6orf229H3BNL8 230 aa10.57□□□□□ -0.72
VIM-202ENST00000421459 ELL2O00472 640 aaPredicted RBP10.57□□□□□ -0.72
VIM-202ENST00000421459 WASHC4Q2M389 1173 aa10.57□□□□□ -0.72
VIM-202ENST00000421459 FAM161AQ3B820 660 aa10.57□□□□□ -0.72
VIM-202ENST00000421459 DUSP27Q5VZP5 1158 aa10.57□□□□□ -0.72
VIM-202ENST00000421459 BEGAINQ9BUH8 593 aa10.57□□□□□ -0.72
VIM-202ENST00000421459 PHAXQ9H814 394 aaKnown RBP10.57□□□□□ -0.72
VIM-202ENST00000421459 SEC31BQ9NQW1 1179 aa10.57□□□□□ -0.72
VIM-202ENST00000421459 TAF1P21675 1872 aa10.57□□□□□ -0.72
VIM-202ENST00000421459 ASTN2O75129 1339 aaPredicted RBP10.57□□□□□ -0.72
VIM-202ENST00000421459 RTL9Q8NET4 1388 aa10.56□□□□□ -0.72
VIM-202ENST00000421459 WTIPA6NIX2 430 aaPredicted RBP10.56□□□□□ -0.72
VIM-202ENST00000421459 ADM5C9JUS6 153 aa10.56□□□□□ -0.72
VIM-202ENST00000421459 H7C1D1 291 aa10.56□□□□□ -0.72
VIM-202ENST00000421459 IRS4O14654 1257 aaPredicted RBP10.56□□□□□ -0.72
VIM-202ENST00000421459 MAP2K2P36507 400 aa10.56□□□□□ -0.72
VIM-202ENST00000421459 SF3B3Q15393 1217 aaKnown RBP10.56□□□□□ -0.72
VIM-202ENST00000421459 CDC37L1Q7L3B6 337 aa10.56□□□□□ -0.72
VIM-202ENST00000421459 CCDC85AQ96PX6 553 aaPredicted RBP10.56□□□□□ -0.72
VIM-202ENST00000421459 MBIPQ9NS73 344 aa10.56□□□□□ -0.72
VIM-202ENST00000421459 DBF4Q9UBU7 674 aaPredicted RBP10.56□□□□□ -0.72
VIM-202ENST00000421459 LAMB2P55268 1798 aa10.56□□□□□ -0.72
VIM-202ENST00000421459 MYBBP1AQ9BQG0 1328 aaKnown RBP10.56□□□□□ -0.72
VIM-202ENST00000421459 ECE2O60344 883 aa10.55□□□□□ -0.72
VIM-202ENST00000421459 HUNKP57058 714 aa10.55□□□□□ -0.72
VIM-202ENST00000421459 WDR43Q15061 677 aaKnown RBP eCLIP10.55□□□□□ -0.72
VIM-202ENST00000421459 TBC1D16Q8TBP0 767 aa10.55□□□□□ -0.72
VIM-202ENST00000421459 ZC3H15Q8WU90 426 aaKnown RBP10.55□□□□□ -0.72
VIM-202ENST00000421459 MYD88Q99836 296 aa10.55□□□□□ -0.72
VIM-202ENST00000421459 RPS8P62241 208 aaKnown RBP10.54□□□□□ -0.72
VIM-202ENST00000421459 KRT26Q7Z3Y9 468 aa10.54□□□□□ -0.72
VIM-202ENST00000421459 RIC3Q7Z5B4 369 aa10.54□□□□□ -0.72
VIM-202ENST00000421459 DPF2Q92785 391 aa10.54□□□□□ -0.72
VIM-202ENST00000421459 CFAP44Q96MT7 982 aa10.54□□□□□ -0.72
VIM-202ENST00000421459 MCOLN1Q9GZU1 580 aa10.54□□□□□ -0.72
VIM-202ENST00000421459 HYPKQ9NX55 129 aa10.54□□□□□ -0.72
VIM-202ENST00000421459 SCAF8Q9UPN6 1271 aaKnown RBP10.54□□□□□ -0.72
VIM-202ENST00000421459 THSD7BQ9C0I4 1608 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 177.8 ms