RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 ITGB2P05107 769 aa6.73□□□□□ -1.33
HMGB3P20-201ENST00000417997 ATP2B4P23634 1241 aa6.73□□□□□ -1.33
HMGB3P20-201ENST00000417997 BRD2P25440 801 aaKnown RBP6.73□□□□□ -1.33
HMGB3P20-201ENST00000417997 TARSP26639 723 aaKnown RBP6.73□□□□□ -1.33
HMGB3P20-201ENST00000417997 MLLT1Q03111 559 aaPredicted RBP6.73□□□□□ -1.33
HMGB3P20-201ENST00000417997 PRRT3Q5FWE3 981 aa6.73□□□□□ -1.33
HMGB3P20-201ENST00000417997 CLP1Q92989 425 aaKnown RBP6.73□□□□□ -1.33
HMGB3P20-201ENST00000417997 JPH1Q9HDC5 661 aaPredicted RBP6.73□□□□□ -1.33
HMGB3P20-201ENST00000417997 C1QTNF9BB2RNN3 333 aa6.72□□□□□ -1.33
HMGB3P20-201ENST00000417997 PTCD1O75127 700 aaKnown RBP6.72□□□□□ -1.33
HMGB3P20-201ENST00000417997 CPB1P15086 417 aa6.72□□□□□ -1.33
HMGB3P20-201ENST00000417997 TRAPPC3LQ5T215 181 aa6.72□□□□□ -1.33
HMGB3P20-201ENST00000417997 PSAPL1Q6NUJ1 521 aa6.72□□□□□ -1.33
HMGB3P20-201ENST00000417997 FAM35AQ86V20 835 aa6.72□□□□□ -1.33
HMGB3P20-201ENST00000417997 ZFATQ9P243 1243 aa6.72□□□□□ -1.33
HMGB3P20-201ENST00000417997 UNC13AQ9UPW8 1703 aa6.72□□□□□ -1.33
HMGB3P20-201ENST00000417997 RGS9O75916 674 aaPredicted RBP6.71□□□□□ -1.34
HMGB3P20-201ENST00000417997 SPATA31C1P0DKV0 1188 aa6.71□□□□□ -1.34
HMGB3P20-201ENST00000417997 ARID4AP29374 1257 aaPredicted RBP6.71□□□□□ -1.34
HMGB3P20-201ENST00000417997 TRIM28Q13263 835 aaKnown RBP6.71□□□□□ -1.34
HMGB3P20-201ENST00000417997 DHX32Q7L7V1 743 aaKnown RBP6.71□□□□□ -1.34
HMGB3P20-201ENST00000417997 CD163Q86VB7 1156 aa6.71□□□□□ -1.34
HMGB3P20-201ENST00000417997 ETFBKMTQ8IXQ9 262 aa6.71□□□□□ -1.34
HMGB3P20-201ENST00000417997 COL26A1Q96A83 441 aa6.71□□□□□ -1.34
HMGB3P20-201ENST00000417997 C1orf115Q9H7X2 142 aa6.71□□□□□ -1.34
HMGB3P20-201ENST00000417997 NAGPAQ9UK23 515 aa6.71□□□□□ -1.34
HMGB3P20-201ENST00000417997 MAP3K6O95382 1288 aa6.7□□□□□ -1.34
HMGB3P20-201ENST00000417997 APBA3O96018 575 aa6.7□□□□□ -1.34
HMGB3P20-201ENST00000417997 PROCP04070 461 aa6.7□□□□□ -1.34
HMGB3P20-201ENST00000417997 CHRNA4P43681 627 aa6.7□□□□□ -1.34
HMGB3P20-201ENST00000417997 PCSK7Q16549 785 aa6.7□□□□□ -1.34
HMGB3P20-201ENST00000417997 C20orf204Q6ZNR8 217 aa6.7□□□□□ -1.34
HMGB3P20-201ENST00000417997 PRDM6Q9NQX0 595 aa6.7□□□□□ -1.34
HMGB3P20-201ENST00000417997 SLAIN2Q9P270 581 aa6.7□□□□□ -1.34
HMGB3P20-201ENST00000417997 SEPT3Q9UH03 358 aa6.7□□□□□ -1.34
HMGB3P20-201ENST00000417997 TNFRSF10BO14763 440 aa6.69□□□□□ -1.34
HMGB3P20-201ENST00000417997 ELMSAN1Q6PJG2 1045 aa6.69□□□□□ -1.34
HMGB3P20-201ENST00000417997 HFE2Q6ZVN8 426 aa6.69□□□□□ -1.34
HMGB3P20-201ENST00000417997 PIK3R5Q8WYR1 880 aa6.69□□□□□ -1.34
HMGB3P20-201ENST00000417997 UBAP1LF5GYI3 381 aa6.68□□□□□ -1.34
HMGB3P20-201ENST00000417997 PSAPP07602 524 aa6.68□□□□□ -1.34
HMGB3P20-201ENST00000417997 NID1P14543 1247 aa6.68□□□□□ -1.34
HMGB3P20-201ENST00000417997 EIF2AK2P19525 551 aaKnown RBP6.68□□□□□ -1.34
HMGB3P20-201ENST00000417997 ZAP70P43403 619 aa6.68□□□□□ -1.34
HMGB3P20-201ENST00000417997 COL9A3Q14050 684 aaPredicted RBP6.68□□□□□ -1.34
HMGB3P20-201ENST00000417997 SUZ12Q15022 739 aaKnown RBP6.68□□□□□ -1.34
HMGB3P20-201ENST00000417997 FAM26DQ5JW98 314 aa6.68□□□□□ -1.34
HMGB3P20-201ENST00000417997 C11orf16Q9NQ32 467 aa6.68□□□□□ -1.34
HMGB3P20-201ENST00000417997 FAM13BQ9NYF5 915 aa6.68□□□□□ -1.34
HMGB3P20-201ENST00000417997 STIM2Q9P246 746 aa6.68□□□□□ -1.34
HMGB3P20-201ENST00000417997 ZBTB42B2RXF5 422 aa6.67□□□□□ -1.34
HMGB3P20-201ENST00000417997 PPP1R15AO75807 674 aaPredicted RBP6.67□□□□□ -1.34
HMGB3P20-201ENST00000417997 SCNN1AP37088 669 aa6.67□□□□□ -1.34
HMGB3P20-201ENST00000417997 BAG6P46379 1132 aa6.67□□□□□ -1.34
HMGB3P20-201ENST00000417997 RAC1P63000 192 aa6.67□□□□□ -1.34
HMGB3P20-201ENST00000417997 GPLD1P80108 840 aa6.67□□□□□ -1.34
HMGB3P20-201ENST00000417997 PERM1Q5SV97 790 aa6.67□□□□□ -1.34
HMGB3P20-201ENST00000417997 GPR152Q8TDT2 470 aa6.67□□□□□ -1.34
HMGB3P20-201ENST00000417997 NSUN5Q96P11 429 aaKnown RBP6.67□□□□□ -1.34
HMGB3P20-201ENST00000417997 TLR7Q9NYK1 1049 aaKnown RBP6.67□□□□□ -1.34
HMGB3P20-201ENST00000417997 KCNMB2Q9Y691 235 aa6.67□□□□□ -1.34
HMGB3P20-201ENST00000417997 J3QW42 95 aa6.66□□□□□ -1.34
HMGB3P20-201ENST00000417997 MMP20O60882 483 aa6.66□□□□□ -1.34
HMGB3P20-201ENST00000417997 EGFRP00533 1210 aa6.66□□□□□ -1.34
HMGB3P20-201ENST00000417997 AFF1P51825 1210 aaKnown RBP6.66□□□□□ -1.34
HMGB3P20-201ENST00000417997 PLAURQ03405 335 aa6.66□□□□□ -1.34
HMGB3P20-201ENST00000417997 TRIP4Q15650 581 aaPredicted RBP6.66□□□□□ -1.34
HMGB3P20-201ENST00000417997 GRIK4Q16099 956 aa6.66□□□□□ -1.34
HMGB3P20-201ENST00000417997 DMRTC2Q8IXT2 367 aaPredicted RBP6.66□□□□□ -1.34
HMGB3P20-201ENST00000417997 ABTB2Q8N961 1025 aa6.66□□□□□ -1.34
HMGB3P20-201ENST00000417997 TRPM4Q8TD43 1214 aa6.66□□□□□ -1.34
HMGB3P20-201ENST00000417997 ARID3AQ99856 593 aa6.66□□□□□ -1.34
HMGB3P20-201ENST00000417997 SMG9Q9H0W8 520 aaKnown RBP6.66□□□□□ -1.34
HMGB3P20-201ENST00000417997 ZBTB39O15060 712 aa6.65□□□□□ -1.34
HMGB3P20-201ENST00000417997 FURINP09958 794 aa6.65□□□□□ -1.34
HMGB3P20-201ENST00000417997 GATA4P43694 442 aa6.65□□□□□ -1.34
HMGB3P20-201ENST00000417997 NRLP54845 237 aa6.65□□□□□ -1.34
HMGB3P20-201ENST00000417997 NLRP13Q86W25 1043 aa6.65□□□□□ -1.34
HMGB3P20-201ENST00000417997 LPIN3Q9BQK8 851 aa6.65□□□□□ -1.34
HMGB3P20-201ENST00000417997 FNDC3AQ9Y2H6 1198 aaKnown RBP6.65□□□□□ -1.34
HMGB3P20-201ENST00000417997 A0A0A0MRY4 1105 aa6.64□□□□□ -1.35
HMGB3P20-201ENST00000417997 CARNS1A5YM72 827 aa6.64□□□□□ -1.35
HMGB3P20-201ENST00000417997 GHRHP01286 108 aa6.64□□□□□ -1.35
HMGB3P20-201ENST00000417997 DOC2BQ14184 412 aa6.64□□□□□ -1.35
HMGB3P20-201ENST00000417997 ATCAYQ86WG3 371 aa6.64□□□□□ -1.35
HMGB3P20-201ENST00000417997 WFDC8Q8IUA0 241 aa6.64□□□□□ -1.35
HMGB3P20-201ENST00000417997 NACC1Q96RE7 527 aa6.64□□□□□ -1.35
HMGB3P20-201ENST00000417997 RBSNQ9H1K0 784 aa6.64□□□□□ -1.35
HMGB3P20-201ENST00000417997 FRRS1LQ9P0K9 344 aa6.64□□□□□ -1.35
HMGB3P20-201ENST00000417997 LOC102724428A0A0B4J2F2 783 aa6.63□□□□□ -1.35
HMGB3P20-201ENST00000417997 TMEM88BA6NKF7 163 aa6.63□□□□□ -1.35
HMGB3P20-201ENST00000417997 SUPT5HO00267 1087 aaKnown RBP6.63□□□□□ -1.35
HMGB3P20-201ENST00000417997 SIK1P57059 783 aa6.63□□□□□ -1.35
HMGB3P20-201ENST00000417997 TTC39BQ5VTQ0 682 aaPredicted RBP6.63□□□□□ -1.35
HMGB3P20-201ENST00000417997 GDF6Q6KF10 455 aaPredicted RBP6.63□□□□□ -1.35
HMGB3P20-201ENST00000417997 GTF3C2Q8WUA4 911 aaPredicted RBP6.63□□□□□ -1.35
HMGB3P20-201ENST00000417997 PLD4Q96BZ4 506 aa6.63□□□□□ -1.35
HMGB3P20-201ENST00000417997 K7ELQ4 463 aaPredicted RBP6.62□□□□□ -1.35
HMGB3P20-201ENST00000417997 ELNP15502 786 aa6.62□□□□□ -1.35
HMGB3P20-201ENST00000417997 AAMPQ13685 434 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms