RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 USP50Q70EL3 339 aaPredicted RBP16.96■□□□□ 0.31
LINC00339-202ENST00000416769 CCDC146Q8IYE0 955 aa16.96■□□□□ 0.31
LINC00339-202ENST00000416769 RTFDC1Q9BY42 306 aaPredicted RBP16.95■□□□□ 0.3
LINC00339-202ENST00000416769 ZNRF3Q9ULT6 936 aa16.95■□□□□ 0.3
LINC00339-202ENST00000416769 TLL2Q9Y6L7 1015 aa16.95■□□□□ 0.3
LINC00339-202ENST00000416769 DDX60Q8IY21 1712 aaKnown RBP16.95■□□□□ 0.3
LINC00339-202ENST00000416769 TMPOP42166 694 aaKnown RBP16.94■□□□□ 0.3
LINC00339-202ENST00000416769 DPP8Q6V1X1 898 aaPredicted RBP16.94■□□□□ 0.3
LINC00339-202ENST00000416769 GPR101Q96P66 508 aaPredicted RBP16.94■□□□□ 0.3
LINC00339-202ENST00000416769 ZIC5Q96T25 663 aa16.94■□□□□ 0.3
LINC00339-202ENST00000416769 ADARB2Q9NS39 739 aaKnown RBP16.94■□□□□ 0.3
LINC00339-202ENST00000416769 CELF2O95319 508 aaKnown RBP16.93■□□□□ 0.3
LINC00339-202ENST00000416769 MAP2K1Q02750 393 aaPredicted RBP16.93■□□□□ 0.3
LINC00339-202ENST00000416769 NEUROD2Q15784 382 aa16.93■□□□□ 0.3
LINC00339-202ENST00000416769 MPNDQ8N594 471 aa16.93■□□□□ 0.3
LINC00339-202ENST00000416769 ZNF408Q9H9D4 720 aa16.93■□□□□ 0.3
LINC00339-202ENST00000416769 ZBTB12Q9Y330 459 aaPredicted RBP16.93■□□□□ 0.3
LINC00339-202ENST00000416769 CASP8AP2Q9UKL3 1982 aa16.93■□□□□ 0.3
LINC00339-202ENST00000416769 LRRC37AA6NMS7 1700 aa16.93■□□□□ 0.3
LINC00339-202ENST00000416769 EGFRP00533 1210 aa16.92■□□□□ 0.3
LINC00339-202ENST00000416769 KIAA2012Q0VF49 1180 aa16.92■□□□□ 0.3
LINC00339-202ENST00000416769 TCIRG1Q13488 830 aa16.92■□□□□ 0.3
LINC00339-202ENST00000416769 CIAPIN1Q6FI81 312 aa16.92■□□□□ 0.3
LINC00339-202ENST00000416769 SP8Q8IXZ3 490 aa16.92■□□□□ 0.3
LINC00339-202ENST00000416769 CHPF2Q9P2E5 772 aa16.92■□□□□ 0.3
LINC00339-202ENST00000416769 TRMT112Q9UI30 125 aaKnown RBP16.92■□□□□ 0.3
LINC00339-202ENST00000416769 GRAPQ13588 217 aa16.91■□□□□ 0.3
LINC00339-202ENST00000416769 FAM161AQ3B820 660 aa16.91■□□□□ 0.3
LINC00339-202ENST00000416769 GRIPAP1Q4V328 841 aa16.91■□□□□ 0.3
LINC00339-202ENST00000416769 RTL5Q5HYW3 569 aaPredicted RBP16.91■□□□□ 0.3
LINC00339-202ENST00000416769 SAPCD2Q86UD0 394 aa16.91■□□□□ 0.3
LINC00339-202ENST00000416769 GRAPLQ8TC17 118 aaPredicted RBP16.91■□□□□ 0.3
LINC00339-202ENST00000416769 CELF1Q92879 486 aaKnown RBP16.91■□□□□ 0.3
LINC00339-202ENST00000416769 KCNQ5Q9NR82 932 aa16.91■□□□□ 0.3
LINC00339-202ENST00000416769 POLR2AP24928 1970 aaKnown RBP16.9■□□□□ 0.3
LINC00339-202ENST00000416769 ATP5J2-PTCD1G3V325 749 aa16.9■□□□□ 0.3
LINC00339-202ENST00000416769 BCL2L13Q9BXK5 485 aa16.9■□□□□ 0.3
LINC00339-202ENST00000416769 TRIM35Q9UPQ4 493 aa16.9■□□□□ 0.3
LINC00339-202ENST00000416769 LAS1LQ9Y4W2 734 aaKnown RBP16.9■□□□□ 0.3
LINC00339-202ENST00000416769 SH3TC1Q8TE82 1336 aa16.9■□□□□ 0.3
LINC00339-202ENST00000416769 BBOX1O75936 387 aa16.89■□□□□ 0.29
LINC00339-202ENST00000416769 ECE1P42892 770 aa16.89■□□□□ 0.29
LINC00339-202ENST00000416769 DDX46Q7L014 1031 aaKnown RBP16.89■□□□□ 0.29
LINC00339-202ENST00000416769 SAMD7Q7Z3H4 446 aa16.89■□□□□ 0.29
LINC00339-202ENST00000416769 FAM89AQ96GI7 184 aa16.89■□□□□ 0.29
LINC00339-202ENST00000416769 DBNDD1Q9H9R9 158 aa16.89■□□□□ 0.29
LINC00339-202ENST00000416769 SCN9AQ15858 1988 aa16.89■□□□□ 0.29
LINC00339-202ENST00000416769 RIMBP2O15034 1052 aa16.88■□□□□ 0.29
LINC00339-202ENST00000416769 MICALL2Q8IY33 904 aa16.88■□□□□ 0.29
LINC00339-202ENST00000416769 SUPT20HQ8NEM7 779 aa16.88■□□□□ 0.29
LINC00339-202ENST00000416769 PGAP2Q9UHJ9 254 aa16.88■□□□□ 0.29
LINC00339-202ENST00000416769 CNOT7Q9UIV1 285 aaKnown RBP16.88■□□□□ 0.29
LINC00339-202ENST00000416769 CCDC85CA6NKD9 419 aa16.87■□□□□ 0.29
LINC00339-202ENST00000416769 PSMD14O00487 310 aa16.87■□□□□ 0.29
LINC00339-202ENST00000416769 CHL1O00533 1208 aa16.87■□□□□ 0.29
LINC00339-202ENST00000416769 GPSM2P81274 684 aa16.87■□□□□ 0.29
LINC00339-202ENST00000416769 USP48Q86UV5 1035 aa16.87■□□□□ 0.29
LINC00339-202ENST00000416769 TMX4Q9H1E5 349 aaPredicted RBP16.87■□□□□ 0.29
LINC00339-202ENST00000416769 POLLQ9UGP5 575 aa16.87■□□□□ 0.29
LINC00339-202ENST00000416769 ASTN2O75129 1339 aaPredicted RBP16.87■□□□□ 0.29
LINC00339-202ENST00000416769 RTL9Q8NET4 1388 aa16.87■□□□□ 0.29
LINC00339-202ENST00000416769 DOK7Q18PE1 504 aa16.86■□□□□ 0.29
LINC00339-202ENST00000416769 TBC1D10BQ4KMP7 808 aaPredicted RBP16.86■□□□□ 0.29
LINC00339-202ENST00000416769 HSP90AB3PQ58FF7 597 aa16.86■□□□□ 0.29
LINC00339-202ENST00000416769 ISCA1Q9BUE6 129 aa16.86■□□□□ 0.29
LINC00339-202ENST00000416769 VPS33BQ9H267 617 aa16.86■□□□□ 0.29
LINC00339-202ENST00000416769 PNNQ9H307 717 aaKnown RBP16.86■□□□□ 0.29
LINC00339-202ENST00000416769 ADM5C9JUS6 153 aa16.85■□□□□ 0.29
LINC00339-202ENST00000416769 HDGFL1Q5TGJ6 251 aa16.85■□□□□ 0.29
LINC00339-202ENST00000416769 BEGAINQ9BUH8 593 aa16.85■□□□□ 0.29
LINC00339-202ENST00000416769 BABAM1Q9NWV8 329 aa16.85■□□□□ 0.29
LINC00339-202ENST00000416769 NSFL1CQ9UNZ2 370 aaKnown RBP16.85■□□□□ 0.29
LINC00339-202ENST00000416769 TNIP1Q15025 636 aa16.84■□□□□ 0.29
LINC00339-202ENST00000416769 RBM26Q5T8P6 1007 aaKnown RBP16.84■□□□□ 0.29
LINC00339-202ENST00000416769 PLBD2Q8NHP8 589 aa16.84■□□□□ 0.29
LINC00339-202ENST00000416769 JARID2Q92833 1246 aaPredicted RBP16.84■□□□□ 0.29
LINC00339-202ENST00000416769 MAP2K2P36507 400 aa16.83■□□□□ 0.28
LINC00339-202ENST00000416769 LMOD3Q0VAK6 560 aa16.83■□□□□ 0.28
LINC00339-202ENST00000416769 CDC37L1Q7L3B6 337 aa16.83■□□□□ 0.28
LINC00339-202ENST00000416769 CDHR2Q9BYE9 1310 aa16.83■□□□□ 0.28
LINC00339-202ENST00000416769 MCOLN1Q9GZU1 580 aa16.83■□□□□ 0.28
LINC00339-202ENST00000416769 SEC31BQ9NQW1 1179 aa16.83■□□□□ 0.28
LINC00339-202ENST00000416769 C6orf229H3BNL8 230 aa16.82■□□□□ 0.28
LINC00339-202ENST00000416769 ECE2O60344 883 aa16.82■□□□□ 0.28
LINC00339-202ENST00000416769 SF3B3Q15393 1217 aaKnown RBP16.82■□□□□ 0.28
LINC00339-202ENST00000416769 WASHC4Q2M389 1173 aa16.82■□□□□ 0.28
LINC00339-202ENST00000416769 ANKRD13DQ6ZTN6 518 aa16.82■□□□□ 0.28
LINC00339-202ENST00000416769 H7C1D1 291 aa16.81■□□□□ 0.28
LINC00339-202ENST00000416769 HUNKP57058 714 aa16.81■□□□□ 0.28
LINC00339-202ENST00000416769 RALBP1Q15311 655 aa16.81■□□□□ 0.28
LINC00339-202ENST00000416769 DUSP27Q5VZP5 1158 aa16.81■□□□□ 0.28
LINC00339-202ENST00000416769 ZC3H15Q8WU90 426 aaKnown RBP16.81■□□□□ 0.28
LINC00339-202ENST00000416769 CCDC85AQ96PX6 553 aaPredicted RBP16.81■□□□□ 0.28
LINC00339-202ENST00000416769 MBIPQ9NS73 344 aa16.81■□□□□ 0.28
LINC00339-202ENST00000416769 ADAMTS8Q9UP79 889 aa16.81■□□□□ 0.28
LINC00339-202ENST00000416769 WTIPA6NIX2 430 aaPredicted RBP16.8■□□□□ 0.28
LINC00339-202ENST00000416769 FAM155AB1AL88 458 aaPredicted RBP16.8■□□□□ 0.28
LINC00339-202ENST00000416769 IRS4O14654 1257 aaPredicted RBP16.8■□□□□ 0.28
LINC00339-202ENST00000416769 BRPF1P55201 1214 aaPredicted RBP16.8■□□□□ 0.28
LINC00339-202ENST00000416769 DIEXFQ68CQ4 756 aaKnown RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms