RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 ABCC4O15439 1325 aa18.48■□□□□ 0.55
LIMS1-206ENST00000414829 UTRNP46939 3433 aa18.48■□□□□ 0.55
LIMS1-206ENST00000414829 LAMB2P55268 1798 aa18.47■□□□□ 0.55
LIMS1-206ENST00000414829 RTL9Q8NET4 1388 aa18.47■□□□□ 0.55
LIMS1-206ENST00000414829 TAOK3Q9H2K8 898 aa18.47■□□□□ 0.55
LIMS1-206ENST00000414829 ZC3H4Q9UPT8 1303 aaKnown RBP18.47■□□□□ 0.55
LIMS1-206ENST00000414829 YY1P25490 414 aa18.46■□□□□ 0.55
LIMS1-206ENST00000414829 ZKSCAN2Q63HK3 967 aa18.46■□□□□ 0.55
LIMS1-206ENST00000414829 ATF7IPQ6VMQ6 1270 aa18.46■□□□□ 0.55
LIMS1-206ENST00000414829 C7orf43Q8WVR3 580 aa18.46■□□□□ 0.55
LIMS1-206ENST00000414829 ATP6V0A2Q9Y487 856 aa18.46■□□□□ 0.55
LIMS1-206ENST00000414829 LMNB1P20700 586 aa18.45■□□□□ 0.54
LIMS1-206ENST00000414829 FRAT1Q92837 279 aaPredicted RBP18.45■□□□□ 0.54
LIMS1-206ENST00000414829 UTYO14607 1347 aa18.45■□□□□ 0.54
LIMS1-206ENST00000414829 MS4A1P11836 297 aa18.44■□□□□ 0.54
LIMS1-206ENST00000414829 CASP7P55210 303 aa18.44■□□□□ 0.54
LIMS1-206ENST00000414829 BCAR3O75815 825 aa18.43■□□□□ 0.54
LIMS1-206ENST00000414829 FKBP4Q02790 459 aaKnown RBP eCLIP18.43■□□□□ 0.54
LIMS1-206ENST00000414829 ANKRD18AQ8IVF6 992 aa18.43■□□□□ 0.54
LIMS1-206ENST00000414829 SP8Q8IXZ3 490 aa18.43■□□□□ 0.54
LIMS1-206ENST00000414829 FTSJ3Q8IY81 847 aaKnown RBP18.43■□□□□ 0.54
LIMS1-206ENST00000414829 SUPT20HQ8NEM7 779 aa18.43■□□□□ 0.54
LIMS1-206ENST00000414829 PSMD1Q99460 953 aa18.43■□□□□ 0.54
LIMS1-206ENST00000414829 ZNF219Q9P2Y4 722 aaPredicted RBP18.43■□□□□ 0.54
LIMS1-206ENST00000414829 DDX60Q8IY21 1712 aaKnown RBP18.43■□□□□ 0.54
LIMS1-206ENST00000414829 NFKBIEO00221 500 aa18.42■□□□□ 0.54
LIMS1-206ENST00000414829 TRIM27P14373 513 aa18.42■□□□□ 0.54
LIMS1-206ENST00000414829 RPS8P62241 208 aaKnown RBP18.42■□□□□ 0.54
LIMS1-206ENST00000414829 TTLL11Q8NHH1 800 aa18.42■□□□□ 0.54
LIMS1-206ENST00000414829 RCAN3Q9UKA8 241 aa18.42■□□□□ 0.54
LIMS1-206ENST00000414829 INTS3Q68E01 1043 aaKnown RBP18.41■□□□□ 0.54
LIMS1-206ENST00000414829 JARID2Q92833 1246 aaPredicted RBP18.41■□□□□ 0.54
LIMS1-206ENST00000414829 YTHDC1Q96MU7 727 aaKnown RBP18.41■□□□□ 0.54
LIMS1-206ENST00000414829 VPS33BQ9H267 617 aa18.41■□□□□ 0.54
LIMS1-206ENST00000414829 RNF181Q9P0P0 153 aa18.41■□□□□ 0.54
LIMS1-206ENST00000414829 CSF1RP07333 972 aa18.4■□□□□ 0.54
LIMS1-206ENST00000414829 UBTFL1P0CB47 393 aaPredicted RBP18.4■□□□□ 0.54
LIMS1-206ENST00000414829 IGHMBP2P38935 993 aaKnown RBP18.4■□□□□ 0.54
LIMS1-206ENST00000414829 RASSF7Q02833 373 aa18.4■□□□□ 0.54
LIMS1-206ENST00000414829 IFIT5Q13325 482 aaKnown RBP18.4■□□□□ 0.54
LIMS1-206ENST00000414829 C9orf131Q5VYM1 1079 aa18.4■□□□□ 0.54
LIMS1-206ENST00000414829 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.4■□□□□ 0.54
LIMS1-206ENST00000414829 ANKRD18BA2A2Z9 1011 aa18.39■□□□□ 0.53
LIMS1-206ENST00000414829 GNAI3P08754 354 aa18.39■□□□□ 0.53
LIMS1-206ENST00000414829 CCDC57Q2TAC2 916 aa18.39■□□□□ 0.53
LIMS1-206ENST00000414829 DPP8Q6V1X1 898 aaPredicted RBP18.39■□□□□ 0.53
LIMS1-206ENST00000414829 CELF1Q92879 486 aaKnown RBP18.39■□□□□ 0.53
LIMS1-206ENST00000414829 GREM2Q9H772 168 aa18.39■□□□□ 0.53
LIMS1-206ENST00000414829 SLX4Q8IY92 1834 aa18.39■□□□□ 0.53
LIMS1-206ENST00000414829 ITGA6P23229 1130 aa18.38■□□□□ 0.53
LIMS1-206ENST00000414829 FAM161AQ3B820 660 aa18.38■□□□□ 0.53
LIMS1-206ENST00000414829 MPNDQ8N594 471 aa18.38■□□□□ 0.53
LIMS1-206ENST00000414829 USP44Q9H0E7 712 aa18.38■□□□□ 0.53
LIMS1-206ENST00000414829 CHMP3Q9Y3E7 222 aa18.38■□□□□ 0.53
LIMS1-206ENST00000414829 SNED1Q8TER0 1413 aa18.38■□□□□ 0.53
LIMS1-206ENST00000414829 NBPF7P0C2Y1 421 aaPredicted RBP18.37■□□□□ 0.53
LIMS1-206ENST00000414829 FOXO4P98177 505 aa18.37■□□□□ 0.53
LIMS1-206ENST00000414829 TAF7LQ5H9L4 462 aa18.37■□□□□ 0.53
LIMS1-206ENST00000414829 LMBR1LQ6UX01 489 aa18.37■□□□□ 0.53
LIMS1-206ENST00000414829 DZIP1LQ8IYY4 767 aaKnown RBP18.37■□□□□ 0.53
LIMS1-206ENST00000414829 CCDC85AQ96PX6 553 aaPredicted RBP18.37■□□□□ 0.53
LIMS1-206ENST00000414829 MPHOSPH8Q99549 860 aa18.37■□□□□ 0.53
LIMS1-206ENST00000414829 SEC31BQ9NQW1 1179 aa18.37■□□□□ 0.53
LIMS1-206ENST00000414829 BSDC1Q9NW68 430 aaPredicted RBP18.37■□□□□ 0.53
LIMS1-206ENST00000414829 CHD4Q14839 1912 aa18.36■□□□□ 0.53
LIMS1-206ENST00000414829 RABL6Q3YEC7 729 aaPredicted RBP18.36■□□□□ 0.53
LIMS1-206ENST00000414829 SUCLG2Q96I99 432 aa18.36■□□□□ 0.53
LIMS1-206ENST00000414829 RTFDC1Q9BY42 306 aaPredicted RBP18.36■□□□□ 0.53
LIMS1-206ENST00000414829 IARSP41252 1262 aaKnown RBP18.35■□□□□ 0.53
LIMS1-206ENST00000414829 JDP2Q8WYK2 163 aa18.35■□□□□ 0.53
LIMS1-206ENST00000414829 EYA3Q99504 573 aa18.35■□□□□ 0.53
LIMS1-206ENST00000414829 BICC1Q9H694 974 aaKnown RBP18.35■□□□□ 0.53
LIMS1-206ENST00000414829 XDHP47989 1333 aa18.34■□□□□ 0.53
LIMS1-206ENST00000414829 KDM2BQ8NHM5 1336 aa18.34■□□□□ 0.53
LIMS1-206ENST00000414829 OLFM4Q6UX06 510 aa18.34■□□□□ 0.53
LIMS1-206ENST00000414829 CLUAP1Q96AJ1 413 aa18.34■□□□□ 0.53
LIMS1-206ENST00000414829 CHMP4BQ9H444 224 aaKnown RBP18.34■□□□□ 0.53
LIMS1-206ENST00000414829 ZNF277Q9NRM2 450 aaPredicted RBP18.34■□□□□ 0.53
LIMS1-206ENST00000414829 PODXL2Q9NZ53 605 aa18.34■□□□□ 0.53
LIMS1-206ENST00000414829 ANKIB1Q9P2G1 1089 aa18.34■□□□□ 0.53
LIMS1-206ENST00000414829 NSFL1CQ9UNZ2 370 aaKnown RBP18.34■□□□□ 0.53
LIMS1-206ENST00000414829 LRRC37AA6NMS7 1700 aa18.33■□□□□ 0.52
LIMS1-206ENST00000414829 ANKRD2Q9GZV1 360 aa18.33■□□□□ 0.52
LIMS1-206ENST00000414829 GGA1Q9UJY5 639 aa18.33■□□□□ 0.52
LIMS1-206ENST00000414829 FER1L6Q2WGJ9 1857 aa18.33■□□□□ 0.52
LIMS1-206ENST00000414829 PPIP5K2O43314 1243 aa18.32■□□□□ 0.52
LIMS1-206ENST00000414829 DPY19L2Q6NUT2 758 aa18.32■□□□□ 0.52
LIMS1-206ENST00000414829 ITPRIPQ8IWB1 547 aa18.32■□□□□ 0.52
LIMS1-206ENST00000414829 LARGE2Q8N3Y3 721 aa18.32■□□□□ 0.52
LIMS1-206ENST00000414829 MYH3P11055 1940 aa18.31■□□□□ 0.52
LIMS1-206ENST00000414829 CACNA1SQ13698 1873 aa18.31■□□□□ 0.52
LIMS1-206ENST00000414829 ATP2B4P23634 1241 aa18.31■□□□□ 0.52
LIMS1-206ENST00000414829 EPHA10Q5JZY3 1008 aa18.31■□□□□ 0.52
LIMS1-206ENST00000414829 NIM1KQ8IY84 436 aa18.31■□□□□ 0.52
LIMS1-206ENST00000414829 TMEM57Q8N5G2 664 aa18.31■□□□□ 0.52
LIMS1-206ENST00000414829 MEIS3Q99687 375 aa18.31■□□□□ 0.52
LIMS1-206ENST00000414829 UFL1O94874 794 aa18.3■□□□□ 0.52
LIMS1-206ENST00000414829 GNAI2P04899 355 aa18.3■□□□□ 0.52
LIMS1-206ENST00000414829 KIAA2012Q0VF49 1180 aa18.3■□□□□ 0.52
LIMS1-206ENST00000414829 LDHAL6AQ6ZMR3 332 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms