RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 TBC1D2BQ9UPU7 963 aa14.07□□□□□ -0.16
LINC00539-201ENST00000411525 FER1L6Q2WGJ9 1857 aa14.07□□□□□ -0.16
LINC00539-201ENST00000411525 NUP98P52948 1817 aa14.06□□□□□ -0.16
LINC00539-201ENST00000411525 HMMRO75330 724 aa14.06□□□□□ -0.16
LINC00539-201ENST00000411525 NBPF7P0C2Y1 421 aaPredicted RBP14.06□□□□□ -0.16
LINC00539-201ENST00000411525 GCKRQ14397 625 aa14.06□□□□□ -0.16
LINC00539-201ENST00000411525 DZIP3Q86Y13 1208 aaKnown RBP14.06□□□□□ -0.16
LINC00539-201ENST00000411525 SMC5Q8IY18 1101 aa14.06□□□□□ -0.16
LINC00539-201ENST00000411525 ZNF622Q969S3 477 aaKnown RBP eCLIP14.06□□□□□ -0.16
LINC00539-201ENST00000411525 HDAC5Q9UQL6 1122 aa14.06□□□□□ -0.16
LINC00539-201ENST00000411525 ERVV-1B6SEH8 477 aa14.05□□□□□ -0.16
LINC00539-201ENST00000411525 ATP5J2-PTCD1G3V325 749 aa14.05□□□□□ -0.16
LINC00539-201ENST00000411525 HSP90AB3PQ58FF7 597 aa14.05□□□□□ -0.16
LINC00539-201ENST00000411525 ISCA1Q9BUE6 129 aa14.05□□□□□ -0.16
LINC00539-201ENST00000411525 CWC25Q9NXE8 425 aaPredicted RBP14.05□□□□□ -0.16
LINC00539-201ENST00000411525 CACNA1SQ13698 1873 aa14.05□□□□□ -0.16
LINC00539-201ENST00000411525 PCNTO95613 3336 aa14.05□□□□□ -0.16
LINC00539-201ENST00000411525 ST5P78524 1137 aa14.04□□□□□ -0.16
LINC00539-201ENST00000411525 TCIRG1Q13488 830 aa14.04□□□□□ -0.16
LINC00539-201ENST00000411525 SOGA3Q5TF21 947 aa14.04□□□□□ -0.16
LINC00539-201ENST00000411525 PRR5LQ6MZQ0 368 aa14.04□□□□□ -0.16
LINC00539-201ENST00000411525 GIGYF2Q6Y7W6 1299 aaKnown RBP14.04□□□□□ -0.16
LINC00539-201ENST00000411525 JMYQ8N9B5 988 aa14.04□□□□□ -0.16
LINC00539-201ENST00000411525 CNBD1Q8NA66 436 aa14.04□□□□□ -0.16
LINC00539-201ENST00000411525 CCDC191Q8NCU4 936 aa14.04□□□□□ -0.16
LINC00539-201ENST00000411525 CNKSR1Q969H4 720 aa14.04□□□□□ -0.16
LINC00539-201ENST00000411525 GCC1Q96CN9 775 aa14.04□□□□□ -0.16
LINC00539-201ENST00000411525 NFKBIEO00221 500 aa14.03□□□□□ -0.16
LINC00539-201ENST00000411525 CLEC4GQ6UXB4 293 aa14.03□□□□□ -0.16
LINC00539-201ENST00000411525 SUCLG2Q96I99 432 aa14.03□□□□□ -0.16
LINC00539-201ENST00000411525 ZNF652Q9Y2D9 606 aa14.03□□□□□ -0.16
LINC00539-201ENST00000411525 COL11A2P13942 1736 aaPredicted RBP14.03□□□□□ -0.16
LINC00539-201ENST00000411525 SLX4Q8IY92 1834 aa14.02□□□□□ -0.16
LINC00539-201ENST00000411525 LTBP3Q9NS15 1303 aa14.02□□□□□ -0.17
LINC00539-201ENST00000411525 C21orf2O43822 256 aa14.02□□□□□ -0.17
LINC00539-201ENST00000411525 CAMTA2O94983 1202 aa14.02□□□□□ -0.17
LINC00539-201ENST00000411525 ATP8B2P98198 1209 aa14.02□□□□□ -0.17
LINC00539-201ENST00000411525 TRIM28Q13263 835 aaKnown RBP14.02□□□□□ -0.17
LINC00539-201ENST00000411525 HLFQ16534 295 aa14.02□□□□□ -0.17
LINC00539-201ENST00000411525 ERFEQ4G0M1 354 aa14.02□□□□□ -0.17
LINC00539-201ENST00000411525 STYK1Q6J9G0 422 aa14.02□□□□□ -0.17
LINC00539-201ENST00000411525 RGL2O15211 777 aa14.01□□□□□ -0.17
LINC00539-201ENST00000411525 PRELPP51888 382 aa14.01□□□□□ -0.17
LINC00539-201ENST00000411525 MTX1Q13505 466 aa14.01□□□□□ -0.17
LINC00539-201ENST00000411525 UBE3BQ7Z3V4 1068 aa14.01□□□□□ -0.17
LINC00539-201ENST00000411525 MASTLQ96GX5 879 aa14.01□□□□□ -0.17
LINC00539-201ENST00000411525 TAOK3Q9H2K8 898 aa14.01□□□□□ -0.17
LINC00539-201ENST00000411525 DCTPP1Q9H773 170 aa14.01□□□□□ -0.17
LINC00539-201ENST00000411525 PNMA6EA0A0J9YXQ4 647 aa14□□□□□ -0.17
LINC00539-201ENST00000411525 SRGNP10124 158 aa14□□□□□ -0.17
LINC00539-201ENST00000411525 CASP7P55210 303 aa14□□□□□ -0.17
LINC00539-201ENST00000411525 HTRA3P83110 453 aa14□□□□□ -0.17
LINC00539-201ENST00000411525 NUCB1Q02818 461 aa14□□□□□ -0.17
LINC00539-201ENST00000411525 POLA2Q14181 598 aa14□□□□□ -0.17
LINC00539-201ENST00000411525 PPP1R42Q7Z4L9 355 aa14□□□□□ -0.17
LINC00539-201ENST00000411525 SKAP1Q86WV1 359 aa14□□□□□ -0.17
LINC00539-201ENST00000411525 NBPF5PQ86XG9 351 aaPredicted RBP14□□□□□ -0.17
LINC00539-201ENST00000411525 SSH3Q8TE77 659 aa14□□□□□ -0.17
LINC00539-201ENST00000411525 KAZALD1Q96I82 304 aa14□□□□□ -0.17
LINC00539-201ENST00000411525 BICC1Q9H694 974 aaKnown RBP14□□□□□ -0.17
LINC00539-201ENST00000411525 LAMB2P55268 1798 aa13.99□□□□□ -0.17
LINC00539-201ENST00000411525 H7C1W4 665 aa13.99□□□□□ -0.17
LINC00539-201ENST00000411525 SRGAP3O43295 1099 aa13.99□□□□□ -0.17
LINC00539-201ENST00000411525 TPTE2Q6XPS3 522 aa13.99□□□□□ -0.17
LINC00539-201ENST00000411525 NLRP10Q86W26 655 aa13.99□□□□□ -0.17
LINC00539-201ENST00000411525 CCDC24Q8N4L8 307 aa13.99□□□□□ -0.17
LINC00539-201ENST00000411525 ZNF219Q9P2Y4 722 aaPredicted RBP13.99□□□□□ -0.17
LINC00539-201ENST00000411525 GPTP24298 496 aa13.98□□□□□ -0.17
LINC00539-201ENST00000411525 RGS3P49796 1198 aa13.98□□□□□ -0.17
LINC00539-201ENST00000411525 PRPF40BQ6NWY9 871 aaKnown RBP13.98□□□□□ -0.17
LINC00539-201ENST00000411525 ZNF34Q8IZ26 560 aa13.98□□□□□ -0.17
LINC00539-201ENST00000411525 SCN4AP35499 1836 aa13.97□□□□□ -0.17
LINC00539-201ENST00000411525 UBN2Q6ZU65 1347 aa13.97□□□□□ -0.17
LINC00539-201ENST00000411525 POTECB2RU33 542 aa13.97□□□□□ -0.17
LINC00539-201ENST00000411525 PCCAP05165 728 aaPredicted RBP13.97□□□□□ -0.17
LINC00539-201ENST00000411525 RABL6Q3YEC7 729 aaPredicted RBP13.97□□□□□ -0.17
LINC00539-201ENST00000411525 ANKRD45Q5TZF3 282 aa13.97□□□□□ -0.17
LINC00539-201ENST00000411525 CHD1LQ86WJ1 897 aa13.97□□□□□ -0.17
LINC00539-201ENST00000411525 ZBTB38Q8NAP3 1195 aaPredicted RBP13.97□□□□□ -0.17
LINC00539-201ENST00000411525 JARID2Q92833 1246 aaPredicted RBP13.97□□□□□ -0.17
LINC00539-201ENST00000411525 CDHR2Q9BYE9 1310 aa13.96□□□□□ -0.17
LINC00539-201ENST00000411525 MYH3P11055 1940 aa13.96□□□□□ -0.17
LINC00539-201ENST00000411525 IQCA1LA6NCM1 817 aa13.96□□□□□ -0.17
LINC00539-201ENST00000411525 NPR1P16066 1061 aa13.96□□□□□ -0.17
LINC00539-201ENST00000411525 CCDC93Q567U6 631 aa13.96□□□□□ -0.17
LINC00539-201ENST00000411525 EPHA10Q5JZY3 1008 aa13.96□□□□□ -0.17
LINC00539-201ENST00000411525 LNPKQ9C0E8 428 aa13.96□□□□□ -0.17
LINC00539-201ENST00000411525 KLRG2A4D1S0 409 aaPredicted RBP13.95□□□□□ -0.18
LINC00539-201ENST00000411525 PDE4AP27815 886 aa13.95□□□□□ -0.18
LINC00539-201ENST00000411525 PARP10Q53GL7 1025 aa13.95□□□□□ -0.18
LINC00539-201ENST00000411525 ZBTB47Q9UFB7 747 aaPredicted RBP13.95□□□□□ -0.18
LINC00539-201ENST00000411525 NIP7Q9Y221 180 aaKnown RBP eCLIP13.95□□□□□ -0.18
LINC00539-201ENST00000411525 EXOC6BQ9Y2D4 811 aa13.95□□□□□ -0.18
LINC00539-201ENST00000411525 DDX60Q8IY21 1712 aaKnown RBP13.95□□□□□ -0.18
LINC00539-201ENST00000411525 GTF2E1P29083 439 aaPredicted RBP13.94□□□□□ -0.18
LINC00539-201ENST00000411525 ALDH1B1P30837 517 aa13.94□□□□□ -0.18
LINC00539-201ENST00000411525 FOXO4P98177 505 aa13.94□□□□□ -0.18
LINC00539-201ENST00000411525 RTL5Q5HYW3 569 aaPredicted RBP13.94□□□□□ -0.18
LINC00539-201ENST00000411525 CHADLQ6NUI6 762 aa13.94□□□□□ -0.18
LINC00539-201ENST00000411525 RTKN2Q8IZC4 609 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms