RNA–Protein interactions for RNA: ENST00000409326.6

PTCD3-202, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 522 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-202ENST00000409326 RCAN3Q9UKA8 241 aa25.66■■□□□ 1.7
PTCD3-202ENST00000409326 CTSWP56202 376 aa25.65■■□□□ 1.7
PTCD3-202ENST00000409326 SBF1O95248 1867 aa25.65■■□□□ 1.7
PTCD3-202ENST00000409326 UTYO14607 1347 aa25.64■■□□□ 1.7
PTCD3-202ENST00000409326 C21orf2O43822 256 aa25.64■■□□□ 1.7
PTCD3-202ENST00000409326 CCDC152Q4G0S7 254 aa25.64■■□□□ 1.7
PTCD3-202ENST00000409326 C7orf43Q8WVR3 580 aa25.64■■□□□ 1.7
PTCD3-202ENST00000409326 COL4A1P02462 1669 aa25.64■■□□□ 1.69
PTCD3-202ENST00000409326 CCDC88AQ3V6T2 1871 aa25.64■■□□□ 1.69
PTCD3-202ENST00000409326 GRAPQ13588 217 aa25.63■■□□□ 1.69
PTCD3-202ENST00000409326 SOGA3Q5TF21 947 aa25.63■■□□□ 1.69
PTCD3-202ENST00000409326 GRAPLQ8TC17 118 aaPredicted RBP25.63■■□□□ 1.69
PTCD3-202ENST00000409326 SPEF2Q9C093 1822 aa25.63■■□□□ 1.69
PTCD3-202ENST00000409326 LRRC37AA6NMS7 1700 aa25.63■■□□□ 1.69
PTCD3-202ENST00000409326 TTLL11Q8NHH1 800 aa25.62■■□□□ 1.69
PTCD3-202ENST00000409326 ZNF219Q9P2Y4 722 aaPredicted RBP25.62■■□□□ 1.69
PTCD3-202ENST00000409326 TNNQ9UQP3 1299 aa25.62■■□□□ 1.69
PTCD3-202ENST00000409326 RTL9Q8NET4 1388 aa25.61■■□□□ 1.69
PTCD3-202ENST00000409326 PPEF1O14829 653 aaPredicted RBP25.61■■□□□ 1.69
PTCD3-202ENST00000409326 NBPF7P0C2Y1 421 aaPredicted RBP25.61■■□□□ 1.69
PTCD3-202ENST00000409326 INTS3Q68E01 1043 aaKnown RBP25.61■■□□□ 1.69
PTCD3-202ENST00000409326 ARHGAP27Q6ZUM4 889 aa25.61■■□□□ 1.69
PTCD3-202ENST00000409326 BBOX1O75936 387 aa25.6■■□□□ 1.69
PTCD3-202ENST00000409326 USP44Q9H0E7 712 aa25.6■■□□□ 1.69
PTCD3-202ENST00000409326 CCDC93Q567U6 631 aa25.59■■□□□ 1.69
PTCD3-202ENST00000409326 CLUAP1Q96AJ1 413 aa25.59■■□□□ 1.69
PTCD3-202ENST00000409326 CCDC85AQ96PX6 553 aaPredicted RBP25.59■■□□□ 1.69
PTCD3-202ENST00000409326 SNED1Q8TER0 1413 aa25.59■■□□□ 1.69
PTCD3-202ENST00000409326 CSF1RP07333 972 aa25.58■■□□□ 1.69
PTCD3-202ENST00000409326 FOXO4P98177 505 aa25.58■■□□□ 1.69
PTCD3-202ENST00000409326 CELF1Q92879 486 aaKnown RBP25.58■■□□□ 1.69
PTCD3-202ENST00000409326 SEC31BQ9NQW1 1179 aa25.58■■□□□ 1.69
PTCD3-202ENST00000409326 DICER1Q9UPY3 1922 aaKnown RBP25.57■■□□□ 1.68
PTCD3-202ENST00000409326 CC2D2BQ6DHV5 1058 aa25.57■■□□□ 1.68
PTCD3-202ENST00000409326 TMC4Q7Z404 712 aa25.57■■□□□ 1.68
PTCD3-202ENST00000409326 SUCLG2Q96I99 432 aa25.57■■□□□ 1.68
PTCD3-202ENST00000409326 GREM2Q9H772 168 aa25.57■■□□□ 1.68
PTCD3-202ENST00000409326 ATP6V0A2Q9Y487 856 aa25.57■■□□□ 1.68
PTCD3-202ENST00000409326 NFKBIEO00221 500 aa25.56■■□□□ 1.68
PTCD3-202ENST00000409326 EPHA10Q5JZY3 1008 aa25.56■■□□□ 1.68
PTCD3-202ENST00000409326 OLFM4Q6UX06 510 aa25.56■■□□□ 1.68
PTCD3-202ENST00000409326 FTSJ3Q8IY81 847 aaKnown RBP25.56■■□□□ 1.68
PTCD3-202ENST00000409326 DZIP1LQ8IYY4 767 aaKnown RBP25.56■■□□□ 1.68
PTCD3-202ENST00000409326 KAZALD1Q96I82 304 aa25.56■■□□□ 1.68
PTCD3-202ENST00000409326 RASSF7Q02833 373 aa25.55■■□□□ 1.68
PTCD3-202ENST00000409326 FAM161AQ3B820 660 aa25.55■■□□□ 1.68
PTCD3-202ENST00000409326 LTBP3Q9NS15 1303 aa25.55■■□□□ 1.68
PTCD3-202ENST00000409326 RPS8P62241 208 aaKnown RBP25.54■■□□□ 1.68
PTCD3-202ENST00000409326 GRIPAP1Q4V328 841 aa25.54■■□□□ 1.68
PTCD3-202ENST00000409326 SLC51AQ86UW1 340 aa25.54■■□□□ 1.68
PTCD3-202ENST00000409326 SP8Q8IXZ3 490 aa25.54■■□□□ 1.68
PTCD3-202ENST00000409326 RTKN2Q8IZC4 609 aa25.54■■□□□ 1.68
PTCD3-202ENST00000409326 TMEM57Q8N5G2 664 aa25.54■■□□□ 1.68
PTCD3-202ENST00000409326 CDC5LQ99459 802 aaKnown RBP25.54■■□□□ 1.68
PTCD3-202ENST00000409326 LMBR1LQ6UX01 489 aa25.53■■□□□ 1.68
PTCD3-202ENST00000409326 TMX4Q9H1E5 349 aaPredicted RBP25.53■■□□□ 1.68
PTCD3-202ENST00000409326 TAOK3Q9H2K8 898 aa25.53■■□□□ 1.68
PTCD3-202ENST00000409326 LTBP1Q14766 1721 aa25.53■■□□□ 1.68
PTCD3-202ENST00000409326 TIAM2Q8IVF5 1701 aa25.52■■□□□ 1.68
PTCD3-202ENST00000409326 UBTFL1P0CB47 393 aaPredicted RBP25.52■■□□□ 1.68
PTCD3-202ENST00000409326 RLBP1P12271 317 aa25.52■■□□□ 1.68
PTCD3-202ENST00000409326 ITGA6P23229 1130 aa25.52■■□□□ 1.68
PTCD3-202ENST00000409326 ANKRD18AQ8IVF6 992 aa25.52■■□□□ 1.68
PTCD3-202ENST00000409326 MEIS3Q99687 375 aa25.52■■□□□ 1.68
PTCD3-202ENST00000409326 BICC1Q9H694 974 aaKnown RBP25.52■■□□□ 1.68
PTCD3-202ENST00000409326 MS4A1P11836 297 aa25.51■■□□□ 1.67
PTCD3-202ENST00000409326 FKBP4Q02790 459 aaKnown RBP eCLIP25.51■■□□□ 1.67
PTCD3-202ENST00000409326 RABL6Q3YEC7 729 aaPredicted RBP25.51■■□□□ 1.67
PTCD3-202ENST00000409326 CHMP3Q9Y3E7 222 aa25.51■■□□□ 1.67
PTCD3-202ENST00000409326 A0A1B0GUL6 1792 aa25.5■■□□□ 1.67
PTCD3-202ENST00000409326 PSMD1Q99460 953 aa25.5■■□□□ 1.67
PTCD3-202ENST00000409326 HDAC5Q9UQL6 1122 aa25.5■■□□□ 1.67
PTCD3-202ENST00000409326 ANKRD18BA2A2Z9 1011 aa25.49■■□□□ 1.67
PTCD3-202ENST00000409326 GNAI3P08754 354 aa25.49■■□□□ 1.67
PTCD3-202ENST00000409326 IFIT5Q13325 482 aaKnown RBP25.49■■□□□ 1.67
PTCD3-202ENST00000409326 ANKRD44Q8N8A2 993 aa25.49■■□□□ 1.67
PTCD3-202ENST00000409326 DUOX1Q9NRD9 1551 aa25.48■■□□□ 1.67
PTCD3-202ENST00000409326 PLIN1O60240 522 aa25.48■■□□□ 1.67
PTCD3-202ENST00000409326 LMNB1P20700 586 aa25.48■■□□□ 1.67
PTCD3-202ENST00000409326 PRELPP51888 382 aa25.48■■□□□ 1.67
PTCD3-202ENST00000409326 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.48■■□□□ 1.67
PTCD3-202ENST00000409326 IGHMBP2P38935 993 aaKnown RBP25.47■■□□□ 1.67
PTCD3-202ENST00000409326 CCDC57Q2TAC2 916 aa25.47■■□□□ 1.67
PTCD3-202ENST00000409326 C9orf131Q5VYM1 1079 aa25.47■■□□□ 1.67
PTCD3-202ENST00000409326 ITPRIPQ8IWB1 547 aa25.47■■□□□ 1.67
PTCD3-202ENST00000409326 PANK1Q8TE04 598 aa25.47■■□□□ 1.67
PTCD3-202ENST00000409326 BSDC1Q9NW68 430 aaPredicted RBP25.47■■□□□ 1.67
PTCD3-202ENST00000409326 MPNDQ8N594 471 aa25.46■■□□□ 1.67
PTCD3-202ENST00000409326 RNF181Q9P0P0 153 aa25.46■■□□□ 1.67
PTCD3-202ENST00000409326 LRRFIP2Q9Y608 721 aaKnown RBP25.46■■□□□ 1.67
PTCD3-202ENST00000409326 DPP8Q6V1X1 898 aaPredicted RBP25.45■■□□□ 1.66
PTCD3-202ENST00000409326 YY1P25490 414 aa25.44■■□□□ 1.66
PTCD3-202ENST00000409326 MPHOSPH8Q99549 860 aa25.44■■□□□ 1.66
PTCD3-202ENST00000409326 RTFDC1Q9BY42 306 aaPredicted RBP25.44■■□□□ 1.66
PTCD3-202ENST00000409326 ZNF277Q9NRM2 450 aaPredicted RBP25.44■■□□□ 1.66
PTCD3-202ENST00000409326 GPSM2P81274 684 aa25.43■■□□□ 1.66
PTCD3-202ENST00000409326 NSFL1CQ9UNZ2 370 aaKnown RBP25.43■■□□□ 1.66
PTCD3-202ENST00000409326 IARSP41252 1262 aaKnown RBP25.42■■□□□ 1.66
PTCD3-202ENST00000409326 PDE3AQ14432 1141 aa25.42■■□□□ 1.66
PTCD3-202ENST00000409326 TAF7LQ5H9L4 462 aa25.42■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms