RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 MAATS1Q7Z4T9 603 aa11.73□□□□□ -0.53
LIMCH1-203ENST00000396595 RNF168Q8IYW5 571 aaPredicted RBP11.73□□□□□ -0.53
LIMCH1-203ENST00000396595 PI4KAP1Q8N8J0 262 aa11.73□□□□□ -0.53
LIMCH1-203ENST00000396595 CEP83Q9Y592 693 aa11.73□□□□□ -0.53
LIMCH1-203ENST00000396595 SMC5Q8IY18 1101 aa11.73□□□□□ -0.53
LIMCH1-203ENST00000396595 CEP112Q8N8E3 955 aa11.73□□□□□ -0.53
LIMCH1-203ENST00000396595 CUL5Q93034 780 aa11.73□□□□□ -0.53
LIMCH1-203ENST00000396595 PANK2Q9BZ23 570 aa11.73□□□□□ -0.53
LIMCH1-203ENST00000396595 NESP48681 1621 aa11.73□□□□□ -0.53
LIMCH1-203ENST00000396595 F13A1P00488 732 aa11.73□□□□□ -0.53
LIMCH1-203ENST00000396595 CCDC96Q2M329 555 aa11.73□□□□□ -0.53
LIMCH1-203ENST00000396595 CTAGE15A4D2H0 777 aa11.73□□□□□ -0.53
LIMCH1-203ENST00000396595 KIF3CO14782 793 aa11.73□□□□□ -0.53
LIMCH1-203ENST00000396595 AKR1B10O60218 316 aa11.73□□□□□ -0.53
LIMCH1-203ENST00000396595 CTAGE8P0CG41 777 aa11.73□□□□□ -0.53
LIMCH1-203ENST00000396595 CYLC1P35663 651 aaPredicted RBP11.73□□□□□ -0.53
LIMCH1-203ENST00000396595 CTAGE6Q86UF2 777 aa11.73□□□□□ -0.53
LIMCH1-203ENST00000396595 CTAGE4Q8IX94 777 aa11.73□□□□□ -0.53
LIMCH1-203ENST00000396595 NECAB1Q8N987 351 aa11.73□□□□□ -0.53
LIMCH1-203ENST00000396595 CTNNBL1Q8WYA6 563 aaPredicted RBP11.73□□□□□ -0.53
LIMCH1-203ENST00000396595 SLC26A6Q9BXS9 759 aa11.73□□□□□ -0.53
LIMCH1-203ENST00000396595 ZSWIM4Q9H7M6 989 aa11.73□□□□□ -0.53
LIMCH1-203ENST00000396595 MFSD6Q6ZSS7 791 aa11.73□□□□□ -0.53
LIMCH1-203ENST00000396595 SLF2Q8IX21 1173 aa11.73□□□□□ -0.53
LIMCH1-203ENST00000396595 RASSF4Q9H2L5 321 aa11.73□□□□□ -0.53
LIMCH1-203ENST00000396595 DNAI1Q9UI46 699 aa11.73□□□□□ -0.53
LIMCH1-203ENST00000396595 SLU7O95391 586 aaKnown RBP11.72□□□□□ -0.53
LIMCH1-203ENST00000396595 ZFYP08048 801 aaPredicted RBP11.72□□□□□ -0.53
LIMCH1-203ENST00000396595 NOP2P46087 812 aaKnown RBP11.72□□□□□ -0.53
LIMCH1-203ENST00000396595 RAB3GAP1Q15042 981 aa11.72□□□□□ -0.53
LIMCH1-203ENST00000396595 ISM2Q6H9L7 571 aa11.72□□□□□ -0.53
LIMCH1-203ENST00000396595 TRIM47Q96LD4 638 aa11.72□□□□□ -0.53
LIMCH1-203ENST00000396595 ZNF830Q96NB3 372 aaPredicted RBP11.72□□□□□ -0.53
LIMCH1-203ENST00000396595 DACT1Q9NYF0 836 aa11.72□□□□□ -0.53
LIMCH1-203ENST00000396595 HSF2BPO75031 334 aa11.72□□□□□ -0.53
LIMCH1-203ENST00000396595 STXBP4Q6ZWJ1 553 aa11.72□□□□□ -0.53
LIMCH1-203ENST00000396595 BANK1Q8NDB2 785 aa11.72□□□□□ -0.53
LIMCH1-203ENST00000396595 MEIS3Q99687 375 aa11.72□□□□□ -0.53
LIMCH1-203ENST00000396595 C14orf93Q9H972 538 aaKnown RBP11.72□□□□□ -0.53
LIMCH1-203ENST00000396595 CWC25Q9NXE8 425 aaPredicted RBP11.72□□□□□ -0.53
LIMCH1-203ENST00000396595 PHF8Q9UPP1 1060 aa11.72□□□□□ -0.53
LIMCH1-203ENST00000396595 KIF14Q15058 1648 aa11.72□□□□□ -0.53
LIMCH1-203ENST00000396595 ABCA10Q8WWZ4 1543 aa11.72□□□□□ -0.53
LIMCH1-203ENST00000396595 CCDC160A6NGH7 325 aa11.72□□□□□ -0.53
LIMCH1-203ENST00000396595 HAND2P61296 217 aa11.72□□□□□ -0.53
LIMCH1-203ENST00000396595 PPP4R3AQ6IN85 833 aa11.72□□□□□ -0.53
LIMCH1-203ENST00000396595 RBM8AQ9Y5S9 174 aaKnown RBP11.72□□□□□ -0.53
LIMCH1-203ENST00000396595 KLF18A0A0U1RQI7 1052 aa11.72□□□□□ -0.53
LIMCH1-203ENST00000396595 EHMT1Q9H9B1 1298 aa11.72□□□□□ -0.53
LIMCH1-203ENST00000396595 MACROD2A1Z1Q3 448 aa11.71□□□□□ -0.53
LIMCH1-203ENST00000396595 NBPF7P0C2Y1 421 aaPredicted RBP11.71□□□□□ -0.53
LIMCH1-203ENST00000396595 TCERG1LQ5VWI1 586 aa11.71□□□□□ -0.53
LIMCH1-203ENST00000396595 SMAP1Q8IYB5 467 aaPredicted RBP11.71□□□□□ -0.53
LIMCH1-203ENST00000396595 MICALL1Q8N3F8 863 aa11.71□□□□□ -0.53
LIMCH1-203ENST00000396595 RSRC1Q96IZ7 334 aaKnown RBP11.71□□□□□ -0.53
LIMCH1-203ENST00000396595 NAP1L3Q99457 506 aaPredicted RBP11.71□□□□□ -0.53
LIMCH1-203ENST00000396595 LDHAL6AQ6ZMR3 332 aa11.71□□□□□ -0.53
LIMCH1-203ENST00000396595 FAM184BQ9ULE4 1060 aa11.71□□□□□ -0.53
LIMCH1-203ENST00000396595 VGLL3A8MV65 326 aa11.71□□□□□ -0.53
LIMCH1-203ENST00000396595 TUBB4BP68371 445 aa11.71□□□□□ -0.53
LIMCH1-203ENST00000396595 UBE3BQ7Z3V4 1068 aa11.71□□□□□ -0.53
LIMCH1-203ENST00000396595 PDE4BQ07343 736 aa11.71□□□□□ -0.54
LIMCH1-203ENST00000396595 C6orf163Q5TEZ5 329 aa11.71□□□□□ -0.54
LIMCH1-203ENST00000396595 SNRKQ9NRH2 765 aa11.71□□□□□ -0.54
LIMCH1-203ENST00000396595 LDHCP07864 332 aa11.71□□□□□ -0.54
LIMCH1-203ENST00000396595 UQCRFS1P1P0C7P4 283 aa11.71□□□□□ -0.54
LIMCH1-203ENST00000396595 PRIM1P49642 420 aaKnown RBP11.71□□□□□ -0.54
LIMCH1-203ENST00000396595 CCDC144CPQ8IYA2 1237 aa11.71□□□□□ -0.54
LIMCH1-203ENST00000396595 A0A1B0GUA9 196 aa11.7□□□□□ -0.54
LIMCH1-203ENST00000396595 FSD2A1L4K1 749 aa11.7□□□□□ -0.54
LIMCH1-203ENST00000396595 TEX13AQ9BXU3 409 aaPredicted RBP11.7□□□□□ -0.54
LIMCH1-203ENST00000396595 NOS1P29475 1434 aa11.7□□□□□ -0.54
LIMCH1-203ENST00000396595 FAM83GA6ND36 823 aa11.7□□□□□ -0.54
LIMCH1-203ENST00000396595 PRPF4BQ13523 1007 aaKnown RBP11.7□□□□□ -0.54
LIMCH1-203ENST00000396595 TMTC2Q8N394 836 aa11.7□□□□□ -0.54
LIMCH1-203ENST00000396595 ASXL1Q8IXJ9 1541 aa11.7□□□□□ -0.54
LIMCH1-203ENST00000396595 ZBTB43O43298 467 aa11.7□□□□□ -0.54
LIMCH1-203ENST00000396595 UBE4AQ14139 1066 aa11.7□□□□□ -0.54
LIMCH1-203ENST00000396595 NPHP3Q7Z494 1330 aa11.7□□□□□ -0.54
LIMCH1-203ENST00000396595 AOPEPQ8N6M6 819 aa11.7□□□□□ -0.54
LIMCH1-203ENST00000396595 TTC21AQ8NDW8 1320 aa11.7□□□□□ -0.54
LIMCH1-203ENST00000396595 MIPOL1Q8TD10 442 aa11.7□□□□□ -0.54
LIMCH1-203ENST00000396595 ALG1Q9BT22 464 aa11.7□□□□□ -0.54
LIMCH1-203ENST00000396595 DNAJC25Q9H1X3 360 aa11.7□□□□□ -0.54
LIMCH1-203ENST00000396595 TTC12Q9H892 705 aaPredicted RBP11.7□□□□□ -0.54
LIMCH1-203ENST00000396595 A0A1B0GUL7 405 aa11.7□□□□□ -0.54
LIMCH1-203ENST00000396595 ATP8B2P98198 1209 aa11.7□□□□□ -0.54
LIMCH1-203ENST00000396595 ANKRD24Q8TF21 1146 aa11.7□□□□□ -0.54
LIMCH1-203ENST00000396595 KAT14Q9H8E8 782 aa11.7□□□□□ -0.54
LIMCH1-203ENST00000396595 EXOC1Q9NV70 894 aa11.7□□□□□ -0.54
LIMCH1-203ENST00000396595 RSPH14Q9UHP6 348 aa11.7□□□□□ -0.54
LIMCH1-203ENST00000396595 CTNNA2P26232 953 aa11.69□□□□□ -0.54
LIMCH1-203ENST00000396595 DNM1Q05193 864 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-203ENST00000396595 TYRO3Q06418 890 aa11.69□□□□□ -0.54
LIMCH1-203ENST00000396595 NAA25Q14CX7 972 aa11.69□□□□□ -0.54
LIMCH1-203ENST00000396595 INTS4Q96HW7 963 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-203ENST00000396595 ZBTB3Q9H5J0 574 aa11.69□□□□□ -0.54
LIMCH1-203ENST00000396595 TSPY2A6NKD2 308 aa11.69□□□□□ -0.54
LIMCH1-203ENST00000396595 CCDC172P0C7W6 258 aa11.69□□□□□ -0.54
LIMCH1-203ENST00000396595 RRAGBQ5VZM2 374 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms