RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 TRMT2AQ8IZ69 625 aaKnown RBP30.19■■■□□ 2.42
SHMT1-204ENST00000395682 PDE8AO60658 829 aa30.18■■■□□ 2.42
SHMT1-204ENST00000395682 SNED1Q8TER0 1413 aa30.17■■■□□ 2.42
SHMT1-204ENST00000395682 F6X3S4 739 aa30.17■■■□□ 2.42
SHMT1-204ENST00000395682 IARSP41252 1262 aaKnown RBP30.17■■■□□ 2.42
SHMT1-204ENST00000395682 DPY19L2Q6NUT2 758 aa30.17■■■□□ 2.42
SHMT1-204ENST00000395682 LINS1Q8NG48 757 aa30.17■■■□□ 2.42
SHMT1-204ENST00000395682 RRAGCQ9HB90 399 aa30.17■■■□□ 2.42
SHMT1-204ENST00000395682 CDHR2Q9BYE9 1310 aa30.16■■■□□ 2.42
SHMT1-204ENST00000395682 H7C1W4 665 aa30.15■■■□□ 2.42
SHMT1-204ENST00000395682 GCKRQ14397 625 aa30.15■■■□□ 2.42
SHMT1-204ENST00000395682 CELF1Q92879 486 aaKnown RBP30.15■■■□□ 2.42
SHMT1-204ENST00000395682 DICER1Q9UPY3 1922 aaKnown RBP30.14■■■□□ 2.42
SHMT1-204ENST00000395682 CCDC152Q4G0S7 254 aa30.14■■■□□ 2.42
SHMT1-204ENST00000395682 TMC4Q7Z404 712 aa30.14■■■□□ 2.42
SHMT1-204ENST00000395682 UBE3BQ7Z3V4 1068 aa30.13■■■□□ 2.41
SHMT1-204ENST00000395682 MRPL50Q8N5N7 158 aaKnown RBP30.13■■■□□ 2.41
SHMT1-204ENST00000395682 TIAM2Q8IVF5 1701 aa30.13■■■□□ 2.41
SHMT1-204ENST00000395682 TAF1P21675 1872 aa30.12■■■□□ 2.41
SHMT1-204ENST00000395682 RPS8P62241 208 aaKnown RBP30.12■■■□□ 2.41
SHMT1-204ENST00000395682 CCDC85AQ96PX6 553 aaPredicted RBP30.12■■■□□ 2.41
SHMT1-204ENST00000395682 SEC31BQ9NQW1 1179 aa30.12■■■□□ 2.41
SHMT1-204ENST00000395682 BEND3Q5T5X7 828 aa30.11■■■□□ 2.41
SHMT1-204ENST00000395682 DPP8Q6V1X1 898 aaPredicted RBP30.11■■■□□ 2.41
SHMT1-204ENST00000395682 MPNDQ8N594 471 aa30.11■■■□□ 2.41
SHMT1-204ENST00000395682 SSH1Q8WYL5 1049 aa30.11■■■□□ 2.41
SHMT1-204ENST00000395682 JDP2Q8WYK2 163 aa30.1■■■□□ 2.41
SHMT1-204ENST00000395682 DDNO94850 711 aaPredicted RBP30.08■■■□□ 2.41
SHMT1-204ENST00000395682 CTSWP56202 376 aa30.08■■■□□ 2.41
SHMT1-204ENST00000395682 SLC4A10Q6U841 1118 aa30.08■■■□□ 2.41
SHMT1-204ENST00000395682 C16orf71Q8IYS4 520 aaPredicted RBP30.08■■■□□ 2.41
SHMT1-204ENST00000395682 LARGE2Q8N3Y3 721 aa30.08■■■□□ 2.41
SHMT1-204ENST00000395682 SUPT20HQ8NEM7 779 aa30.08■■■□□ 2.41
SHMT1-204ENST00000395682 TTLL11Q8NHH1 800 aa30.08■■■□□ 2.41
SHMT1-204ENST00000395682 RTFDC1Q9BY42 306 aaPredicted RBP30.08■■■□□ 2.41
SHMT1-204ENST00000395682 TOMM70O94826 608 aa30.07■■■□□ 2.4
SHMT1-204ENST00000395682 VEGFAP15692 232 aaPredicted RBP30.07■■■□□ 2.4
SHMT1-204ENST00000395682 FZD9O00144 591 aa30.06■■■□□ 2.4
SHMT1-204ENST00000395682 CASP7P55210 303 aa30.06■■■□□ 2.4
SHMT1-204ENST00000395682 HNRNPUQ00839 825 aaKnown RBP eCLIP30.06■■■□□ 2.4
SHMT1-204ENST00000395682 BCL2L13Q9BXK5 485 aa30.06■■■□□ 2.4
SHMT1-204ENST00000395682 PPIP5K2O43314 1243 aa30.05■■■□□ 2.4
SHMT1-204ENST00000395682 CT47B1P0C2W7 299 aaPredicted RBP30.05■■■□□ 2.4
SHMT1-204ENST00000395682 ALDH1L2Q3SY69 923 aa30.05■■■□□ 2.4
SHMT1-204ENST00000395682 VPS33BQ9H267 617 aa30.05■■■□□ 2.4
SHMT1-204ENST00000395682 AOC3Q16853 763 aa30.04■■■□□ 2.4
SHMT1-204ENST00000395682 PLA2G12BQ9BX93 195 aa30.04■■■□□ 2.4
SHMT1-204ENST00000395682 NSFL1CQ9UNZ2 370 aaKnown RBP30.04■■■□□ 2.4
SHMT1-204ENST00000395682 ZNF541Q9H0D2 1346 aa30.03■■■□□ 2.4
SHMT1-204ENST00000395682 POTECB2RU33 542 aa30.03■■■□□ 2.4
SHMT1-204ENST00000395682 ALDH1L1O75891 902 aa30.03■■■□□ 2.4
SHMT1-204ENST00000395682 SRCIN1Q9C0H9 1055 aa30.03■■■□□ 2.4
SHMT1-204ENST00000395682 GREM2Q9H772 168 aa30.03■■■□□ 2.4
SHMT1-204ENST00000395682 COL4A1P02462 1669 aa30.03■■■□□ 2.4
SHMT1-204ENST00000395682 PTPRCP08575 1304 aa30.02■■■□□ 2.4
SHMT1-204ENST00000395682 GPSM2P81274 684 aa30.02■■■□□ 2.4
SHMT1-204ENST00000395682 ANKRD18AQ8IVF6 992 aa30.02■■■□□ 2.4
SHMT1-204ENST00000395682 SMC4Q9NTJ3 1288 aa30.02■■■□□ 2.4
SHMT1-204ENST00000395682 NIM1KQ8IY84 436 aa30.01■■■□□ 2.39
SHMT1-204ENST00000395682 CDC5LQ99459 802 aaKnown RBP30.01■■■□□ 2.39
SHMT1-204ENST00000395682 EIF6P56537 245 aaKnown RBP30■■■□□ 2.39
SHMT1-204ENST00000395682 RBM46Q8TBY0 533 aaKnown RBP30■■■□□ 2.39
SHMT1-204ENST00000395682 C9orf78Q9NZ63 289 aaPredicted RBP30■■■□□ 2.39
SHMT1-204ENST00000395682 COL4A5P29400 1685 aa29.99■■■□□ 2.39
SHMT1-204ENST00000395682 GRM8O00222 908 aa29.99■■■□□ 2.39
SHMT1-204ENST00000395682 KIAA2012Q0VF49 1180 aa29.99■■■□□ 2.39
SHMT1-204ENST00000395682 C6orf229H3BNL8 230 aa29.98■■■□□ 2.39
SHMT1-204ENST00000395682 CSF1RP07333 972 aa29.98■■■□□ 2.39
SHMT1-204ENST00000395682 POLLQ9UGP5 575 aa29.98■■■□□ 2.39
SHMT1-204ENST00000395682 RTL9Q8NET4 1388 aa29.98■■■□□ 2.39
SHMT1-204ENST00000395682 WDR90Q96KV7 1748 aa29.97■■■□□ 2.39
SHMT1-204ENST00000395682 GPC2Q8N158 579 aa29.97■■■□□ 2.39
SHMT1-204ENST00000395682 L3MBTL3Q96JM7 780 aaPredicted RBP29.97■■■□□ 2.39
SHMT1-204ENST00000395682 ANKIB1Q9P2G1 1089 aa29.97■■■□□ 2.39
SHMT1-204ENST00000395682 FOXO4P98177 505 aa29.96■■■□□ 2.39
SHMT1-204ENST00000395682 WASHC4Q2M389 1173 aa29.96■■■□□ 2.39
SHMT1-204ENST00000395682 ZNRF3Q9ULT6 936 aa29.96■■■□□ 2.39
SHMT1-204ENST00000395682 GJA3Q9Y6H8 435 aa29.96■■■□□ 2.39
SHMT1-204ENST00000395682 LRRC37AA6NMS7 1700 aa29.96■■■□□ 2.39
SHMT1-204ENST00000395682 ITGA6P23229 1130 aa29.95■■■□□ 2.39
SHMT1-204ENST00000395682 TBC1D16Q8TBP0 767 aa29.95■■■□□ 2.39
SHMT1-204ENST00000395682 PODXL2Q9NZ53 605 aa29.95■■■□□ 2.39
SHMT1-204ENST00000395682 MYH3P11055 1940 aa29.94■■■□□ 2.38
SHMT1-204ENST00000395682 IQCA1LA6NCM1 817 aa29.94■■■□□ 2.38
SHMT1-204ENST00000395682 FAM161AQ3B820 660 aa29.94■■■□□ 2.38
SHMT1-204ENST00000395682 BSDC1Q9NW68 430 aaPredicted RBP29.94■■■□□ 2.38
SHMT1-204ENST00000395682 RIMBP2O15034 1052 aa29.93■■■□□ 2.38
SHMT1-204ENST00000395682 RARSP54136 660 aaKnown RBP29.93■■■□□ 2.38
SHMT1-204ENST00000395682 EYA3Q99504 573 aa29.93■■■□□ 2.38
SHMT1-204ENST00000395682 NOB1Q9ULX3 412 aaKnown RBP29.93■■■□□ 2.38
SHMT1-204ENST00000395682 IGHMBP2P38935 993 aaKnown RBP29.92■■■□□ 2.38
SHMT1-204ENST00000395682 DUOX1Q9NRD9 1551 aa29.92■■■□□ 2.38
SHMT1-204ENST00000395682 UFL1O94874 794 aa29.91■■■□□ 2.38
SHMT1-204ENST00000395682 BRPF1P55201 1214 aaPredicted RBP29.91■■■□□ 2.38
SHMT1-204ENST00000395682 FSTL1Q12841 308 aa29.91■■■□□ 2.38
SHMT1-204ENST00000395682 EPHA10Q5JZY3 1008 aa29.91■■■□□ 2.38
SHMT1-204ENST00000395682 GGA1Q9UJY5 639 aa29.91■■■□□ 2.38
SHMT1-204ENST00000395682 MINPP1Q9UNW1 487 aa29.91■■■□□ 2.38
SHMT1-204ENST00000395682 CHMP3Q9Y3E7 222 aa29.91■■■□□ 2.38
SHMT1-204ENST00000395682 ANKRD18BA2A2Z9 1011 aa29.9■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms