RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 KIF5AQ12840 1032 aa13.51□□□□□ -0.25
SYNPO-202ENST00000394243 UTP14AQ9BVJ6 771 aaKnown RBP13.51□□□□□ -0.25
SYNPO-202ENST00000394243 RABEP2Q9H5N1 569 aa13.51□□□□□ -0.25
SYNPO-202ENST00000394243 TCP11L1Q9NUJ3 509 aa13.51□□□□□ -0.25
SYNPO-202ENST00000394243 MRPS27Q92552 414 aaKnown RBP13.51□□□□□ -0.25
SYNPO-202ENST00000394243 CCDC77Q9BR77 488 aa13.51□□□□□ -0.25
SYNPO-202ENST00000394243 SMARCA2P51531 1590 aa13.5□□□□□ -0.25
SYNPO-202ENST00000394243 CFAP58Q5T655 872 aa13.5□□□□□ -0.25
SYNPO-202ENST00000394243 TSNARE1Q96NA8 513 aa13.5□□□□□ -0.25
SYNPO-202ENST00000394243 KCNK9Q9NPC2 374 aa13.5□□□□□ -0.25
SYNPO-202ENST00000394243 RANBP6O60518 1105 aaKnown RBP13.5□□□□□ -0.25
SYNPO-202ENST00000394243 SETDB1Q15047 1291 aa13.5□□□□□ -0.25
SYNPO-202ENST00000394243 ELF2Q15723 593 aa13.5□□□□□ -0.25
SYNPO-202ENST00000394243 METTL24Q5JXM2 366 aa13.5□□□□□ -0.25
SYNPO-202ENST00000394243 TUBBP07437 444 aa13.5□□□□□ -0.25
SYNPO-202ENST00000394243 UBA7P41226 1012 aa13.5□□□□□ -0.25
SYNPO-202ENST00000394243 KRT83P78385 493 aa13.5□□□□□ -0.25
SYNPO-202ENST00000394243 NUCB1Q02818 461 aa13.5□□□□□ -0.25
SYNPO-202ENST00000394243 MCM10Q7L590 875 aa13.5□□□□□ -0.25
SYNPO-202ENST00000394243 KLHL34Q8N239 644 aa13.5□□□□□ -0.25
SYNPO-202ENST00000394243 PYM1Q9BRP8 204 aaKnown RBP13.5□□□□□ -0.25
SYNPO-202ENST00000394243 KIAA1107Q9UPP5 1409 aa13.49□□□□□ -0.25
SYNPO-202ENST00000394243 A0A087WZG4 1122 aa13.49□□□□□ -0.25
SYNPO-202ENST00000394243 MPHOSPH10O00566 681 aaKnown RBP13.49□□□□□ -0.25
SYNPO-202ENST00000394243 KCNG4Q8TDN1 519 aa13.49□□□□□ -0.25
SYNPO-202ENST00000394243 GRIPAP1Q4V328 841 aa13.49□□□□□ -0.25
SYNPO-202ENST00000394243 C17orf53Q8N3J3 647 aaPredicted RBP13.49□□□□□ -0.25
SYNPO-202ENST00000394243 SEC62Q99442 399 aaKnown RBP13.49□□□□□ -0.25
SYNPO-202ENST00000394243 TATP17735 454 aaPredicted RBP13.49□□□□□ -0.25
SYNPO-202ENST00000394243 KIF3CO14782 793 aa13.49□□□□□ -0.25
SYNPO-202ENST00000394243 SDSP20132 328 aa13.49□□□□□ -0.25
SYNPO-202ENST00000394243 HPDP32754 393 aaPredicted RBP13.49□□□□□ -0.25
SYNPO-202ENST00000394243 STMN2Q93045 179 aa13.49□□□□□ -0.25
SYNPO-202ENST00000394243 RMND1Q9NWS8 449 aa13.49□□□□□ -0.25
SYNPO-202ENST00000394243 TERF1P54274 439 aa13.49□□□□□ -0.25
SYNPO-202ENST00000394243 EXOC1Q9NV70 894 aa13.49□□□□□ -0.25
SYNPO-202ENST00000394243 CWC25Q9NXE8 425 aaPredicted RBP13.49□□□□□ -0.25
SYNPO-202ENST00000394243 ZSCAN29Q8IWY8 852 aaPredicted RBP13.49□□□□□ -0.25
SYNPO-202ENST00000394243 MKNK2Q9HBH9 465 aa13.49□□□□□ -0.25
SYNPO-202ENST00000394243 AKAP2Q9Y2D5 859 aa13.49□□□□□ -0.25
SYNPO-202ENST00000394243 LUC7L2Q9Y383 392 aaKnown RBP13.49□□□□□ -0.25
SYNPO-202ENST00000394243 NSD3Q9BZ95 1437 aa13.48□□□□□ -0.25
SYNPO-202ENST00000394243 VIMP08670 466 aaKnown RBP13.48□□□□□ -0.25
SYNPO-202ENST00000394243 BANK1Q8NDB2 785 aa13.48□□□□□ -0.25
SYNPO-202ENST00000394243 SWAP70Q9UH65 585 aa13.48□□□□□ -0.25
SYNPO-202ENST00000394243 RBM5P52756 815 aaKnown RBP eCLIP13.48□□□□□ -0.25
SYNPO-202ENST00000394243 MICU3Q86XE3 530 aa13.48□□□□□ -0.25
SYNPO-202ENST00000394243 IQCA1Q86XH1 822 aa13.48□□□□□ -0.25
SYNPO-202ENST00000394243 UBLCP1Q8WVY7 318 aaPredicted RBP13.48□□□□□ -0.25
SYNPO-202ENST00000394243 SLC26A6Q9BXS9 759 aa13.48□□□□□ -0.25
SYNPO-202ENST00000394243 MMRN2Q9H8L6 949 aa13.48□□□□□ -0.25
SYNPO-202ENST00000394243 COMMD10Q9Y6G5 202 aa13.48□□□□□ -0.25
SYNPO-202ENST00000394243 PDS5BQ9NTI5 1447 aa13.48□□□□□ -0.25
SYNPO-202ENST00000394243 PLVAPQ9BX97 442 aa13.48□□□□□ -0.25
SYNPO-202ENST00000394243 METAP2P50579 478 aaKnown RBP eCLIP13.48□□□□□ -0.25
SYNPO-202ENST00000394243 SMC5Q8IY18 1101 aa13.48□□□□□ -0.25
SYNPO-202ENST00000394243 SREK1Q8WXA9 508 aaKnown RBP13.48□□□□□ -0.25
SYNPO-202ENST00000394243 MARCKSP29966 332 aaPredicted RBP13.48□□□□□ -0.25
SYNPO-202ENST00000394243 ACTN2P35609 894 aa13.48□□□□□ -0.25
SYNPO-202ENST00000394243 INTS8Q75QN2 995 aaKnown RBP13.47□□□□□ -0.25
SYNPO-202ENST00000394243 CCDC50Q8IVM0 306 aa13.47□□□□□ -0.25
SYNPO-202ENST00000394243 IFT74Q96LB3 600 aa13.47□□□□□ -0.25
SYNPO-202ENST00000394243 RTL1A6NKG5 1358 aa13.47□□□□□ -0.25
SYNPO-202ENST00000394243 MAP3K9P80192 1104 aa13.47□□□□□ -0.25
SYNPO-202ENST00000394243 CATIPQ7Z7H3 387 aa13.47□□□□□ -0.25
SYNPO-202ENST00000394243 SPAG5Q96R06 1193 aa13.47□□□□□ -0.25
SYNPO-202ENST00000394243 PSMD1Q99460 953 aa13.47□□□□□ -0.25
SYNPO-202ENST00000394243 TNIP1Q15025 636 aa13.47□□□□□ -0.25
SYNPO-202ENST00000394243 TMEM67Q5HYA8 995 aa13.47□□□□□ -0.25
SYNPO-202ENST00000394243 ANAPC4Q9UJX5 808 aa13.47□□□□□ -0.25
SYNPO-202ENST00000394243 PSMC4P43686 418 aa13.47□□□□□ -0.25
SYNPO-202ENST00000394243 CCDC63Q8NA47 563 aa13.47□□□□□ -0.25
SYNPO-202ENST00000394243 HAND2P61296 217 aa13.47□□□□□ -0.25
SYNPO-202ENST00000394243 FERMT2Q96AC1 680 aa13.47□□□□□ -0.25
SYNPO-202ENST00000394243 TRIM7Q9C029 511 aa13.47□□□□□ -0.25
SYNPO-202ENST00000394243 RBM28Q9NW13 759 aaKnown RBP13.47□□□□□ -0.25
SYNPO-202ENST00000394243 SETSIPP0DME0 302 aa13.47□□□□□ -0.25
SYNPO-202ENST00000394243 SPAG1Q07617 926 aa13.47□□□□□ -0.25
SYNPO-202ENST00000394243 FAM114A2Q9NRY5 505 aa13.47□□□□□ -0.25
SYNPO-202ENST00000394243 GOLGA6CA6NDK9 693 aa13.46□□□□□ -0.25
SYNPO-202ENST00000394243 GOLGA6DP0CG33 693 aa13.46□□□□□ -0.25
SYNPO-202ENST00000394243 OAS2P29728 719 aaKnown RBP13.46□□□□□ -0.25
SYNPO-202ENST00000394243 CACNA2D3Q8IZS8 1091 aa13.46□□□□□ -0.25
SYNPO-202ENST00000394243 MYCBPQ99417 103 aaPredicted RBP13.46□□□□□ -0.25
SYNPO-202ENST00000394243 GOLGA6AQ9NYA3 693 aa13.46□□□□□ -0.25
SYNPO-202ENST00000394243 TAF7Q15545 349 aaPredicted RBP13.46□□□□□ -0.25
SYNPO-202ENST00000394243 ECHDC1Q9NTX5 307 aa13.46□□□□□ -0.25
SYNPO-202ENST00000394243 HMG20BQ9P0W2 317 aa13.46□□□□□ -0.25
SYNPO-202ENST00000394243 GNAT3A8MTJ3 354 aa13.46□□□□□ -0.25
SYNPO-202ENST00000394243 GBP1P32455 592 aa13.46□□□□□ -0.25
SYNPO-202ENST00000394243 ARID5AQ03989 594 aa13.46□□□□□ -0.25
SYNPO-202ENST00000394243 CCDC25Q86WR0 208 aa13.46□□□□□ -0.25
SYNPO-202ENST00000394243 ZGPATQ8N5A5 531 aaKnown RBP13.46□□□□□ -0.25
SYNPO-202ENST00000394243 TBC1D5Q92609 795 aa13.46□□□□□ -0.25
SYNPO-202ENST00000394243 PPP1R9BQ96SB3 815 aa13.46□□□□□ -0.25
SYNPO-202ENST00000394243 CEP120Q8N960 986 aa13.46□□□□□ -0.26
SYNPO-202ENST00000394243 CARD6Q9BX69 1037 aa13.46□□□□□ -0.26
SYNPO-202ENST00000394243 CCDC42Q96M95 316 aa13.46□□□□□ -0.26
SYNPO-202ENST00000394243 TCEANC2Q96MN5 208 aa13.46□□□□□ -0.26
SYNPO-202ENST00000394243 RPGRIP1LQ68CZ1 1315 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms