RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 CCDC152Q4G0S7 254 aa14.59□□□□□ -0.07
CCDC88C-204ENST00000389857 NAIPQ13075 1403 aa14.59□□□□□ -0.07
CCDC88C-204ENST00000389857 GTF2F1P35269 517 aaKnown RBP eCLIP14.59□□□□□ -0.07
CCDC88C-204ENST00000389857 ARL1P40616 181 aaPredicted RBP14.59□□□□□ -0.07
CCDC88C-204ENST00000389857 ZNF219Q9P2Y4 722 aaPredicted RBP14.59□□□□□ -0.07
CCDC88C-204ENST00000389857 WDR97A6NE52 1622 aa14.59□□□□□ -0.07
CCDC88C-204ENST00000389857 AKR1B10O60218 316 aa14.59□□□□□ -0.07
CCDC88C-204ENST00000389857 GPTP24298 496 aa14.59□□□□□ -0.07
CCDC88C-204ENST00000389857 GNG11P61952 73 aa14.59□□□□□ -0.07
CCDC88C-204ENST00000389857 IFIT1BQ5T764 474 aaKnown RBP14.59□□□□□ -0.07
CCDC88C-204ENST00000389857 DAAM2Q86T65 1068 aa14.59□□□□□ -0.07
CCDC88C-204ENST00000389857 ATP2A1O14983 1001 aa14.59□□□□□ -0.07
CCDC88C-204ENST00000389857 ZNF165P49910 485 aa14.59□□□□□ -0.07
CCDC88C-204ENST00000389857 OTUD6BQ8N6M0 293 aa14.59□□□□□ -0.07
CCDC88C-204ENST00000389857 LMBR1Q8WVP7 490 aa14.59□□□□□ -0.07
CCDC88C-204ENST00000389857 F6X3S4 739 aa14.59□□□□□ -0.07
CCDC88C-204ENST00000389857 ZWINTO95229 277 aa14.58□□□□□ -0.07
CCDC88C-204ENST00000389857 UBASH3AP57075 661 aa14.58□□□□□ -0.07
CCDC88C-204ENST00000389857 RRAGBQ5VZM2 374 aa14.58□□□□□ -0.07
CCDC88C-204ENST00000389857 ANKS4BQ8N8V4 417 aa14.58□□□□□ -0.07
CCDC88C-204ENST00000389857 RFC4P35249 363 aa14.58□□□□□ -0.08
CCDC88C-204ENST00000389857 FLIIQ13045 1269 aa14.58□□□□□ -0.08
CCDC88C-204ENST00000389857 TRMT1LQ7Z2T5 733 aaKnown RBP14.58□□□□□ -0.08
CCDC88C-204ENST00000389857 PAIP2Q9BPZ3 127 aaKnown RBP14.58□□□□□ -0.08
CCDC88C-204ENST00000389857 IMPG2Q9BZV3 1241 aa14.58□□□□□ -0.08
CCDC88C-204ENST00000389857 WDR70Q9NW82 654 aa14.58□□□□□ -0.08
CCDC88C-204ENST00000389857 NCBP1Q09161 790 aaKnown RBP14.58□□□□□ -0.08
CCDC88C-204ENST00000389857 SPAG5Q96R06 1193 aa14.58□□□□□ -0.08
CCDC88C-204ENST00000389857 RBM25P49756 843 aaKnown RBP14.58□□□□□ -0.08
CCDC88C-204ENST00000389857 TFIP11Q9UBB9 837 aaKnown RBP14.58□□□□□ -0.08
CCDC88C-204ENST00000389857 NSD2O96028 1365 aa14.58□□□□□ -0.08
CCDC88C-204ENST00000389857 MAP3K9P80192 1104 aa14.58□□□□□ -0.08
CCDC88C-204ENST00000389857 KCNG4Q8TDN1 519 aa14.58□□□□□ -0.08
CCDC88C-204ENST00000389857 PRDM10Q9NQV6 1147 aa14.58□□□□□ -0.08
CCDC88C-204ENST00000389857 NDC80O14777 642 aa14.57□□□□□ -0.08
CCDC88C-204ENST00000389857 CCDC6Q16204 474 aa14.57□□□□□ -0.08
CCDC88C-204ENST00000389857 TTC14Q96N46 770 aa14.57□□□□□ -0.08
CCDC88C-204ENST00000389857 GNAQP50148 359 aa14.57□□□□□ -0.08
CCDC88C-204ENST00000389857 HDAC9Q9UKV0 1011 aa14.57□□□□□ -0.08
CCDC88C-204ENST00000389857 B4DLN1 442 aa14.57□□□□□ -0.08
CCDC88C-204ENST00000389857 MRPL12P52815 198 aaKnown RBP14.57□□□□□ -0.08
CCDC88C-204ENST00000389857 OPA1O60313 960 aa14.57□□□□□ -0.08
CCDC88C-204ENST00000389857 ZFYP08048 801 aaPredicted RBP14.57□□□□□ -0.08
CCDC88C-204ENST00000389857 ISM2Q6H9L7 571 aa14.57□□□□□ -0.08
CCDC88C-204ENST00000389857 ADAMTS2O95450 1211 aa14.57□□□□□ -0.08
CCDC88C-204ENST00000389857 GSTA5Q7RTV2 222 aa14.57□□□□□ -0.08
CCDC88C-204ENST00000389857 ANAPC4Q9UJX5 808 aa14.57□□□□□ -0.08
CCDC88C-204ENST00000389857 SERPINA10Q9UK55 444 aa14.57□□□□□ -0.08
CCDC88C-204ENST00000389857 SPAG1Q07617 926 aa14.56□□□□□ -0.08
CCDC88C-204ENST00000389857 ZNF622Q969S3 477 aaKnown RBP eCLIP14.56□□□□□ -0.085e-6■■□□□ 12.5
CCDC88C-204ENST00000389857 PRIMPOLQ96LW4 560 aa14.56□□□□□ -0.08
CCDC88C-204ENST00000389857 PANK2Q9BZ23 570 aa14.56□□□□□ -0.08
CCDC88C-204ENST00000389857 ZBTB3Q9H5J0 574 aa14.56□□□□□ -0.08
CCDC88C-204ENST00000389857 ARAP1Q96P48 1450 aa14.56□□□□□ -0.08
CCDC88C-204ENST00000389857 LRSAM1Q6UWE0 723 aa14.56□□□□□ -0.08
CCDC88C-204ENST00000389857 IFNL2Q8IZJ0 200 aa14.56□□□□□ -0.08
CCDC88C-204ENST00000389857 MRVI1Q9Y6F6 885 aa14.56□□□□□ -0.08
CCDC88C-204ENST00000389857 SLU7O95391 586 aaKnown RBP14.56□□□□□ -0.08
CCDC88C-204ENST00000389857 MAP7D1Q3KQU3 841 aa14.56□□□□□ -0.08
CCDC88C-204ENST00000389857 WAPLQ7Z5K2 1190 aa14.56□□□□□ -0.08
CCDC88C-204ENST00000389857 TIGD1Q96MW7 591 aa14.56□□□□□ -0.08
CCDC88C-204ENST00000389857 IVLP07476 585 aa14.55□□□□□ -0.08
CCDC88C-204ENST00000389857 HAND2P61296 217 aa14.55□□□□□ -0.08
CCDC88C-204ENST00000389857 MSANTD4Q8NCY6 345 aa14.55□□□□□ -0.08
CCDC88C-204ENST00000389857 ESR2Q92731 530 aa14.55□□□□□ -0.08
CCDC88C-204ENST00000389857 PTPN23Q9H3S7 1636 aa14.55□□□□□ -0.08
CCDC88C-204ENST00000389857 CTAGE15A4D2H0 777 aa14.55□□□□□ -0.08
CCDC88C-204ENST00000389857 ZBTB43O43298 467 aa14.55□□□□□ -0.08
CCDC88C-204ENST00000389857 RAPGEF3O95398 923 aa14.55□□□□□ -0.08
CCDC88C-204ENST00000389857 CTAGE8P0CG41 777 aa14.55□□□□□ -0.08
CCDC88C-204ENST00000389857 CTAGE6Q86UF2 777 aa14.55□□□□□ -0.08
CCDC88C-204ENST00000389857 CTAGE4Q8IX94 777 aa14.55□□□□□ -0.08
CCDC88C-204ENST00000389857 SMC6Q96SB8 1091 aa14.55□□□□□ -0.08
CCDC88C-204ENST00000389857 TBC1D9Q6ZT07 1266 aa14.55□□□□□ -0.08
CCDC88C-204ENST00000389857 KIAA1524Q8TCG1 905 aa14.55□□□□□ -0.08
CCDC88C-204ENST00000389857 PHF8Q9UPP1 1060 aa14.55□□□□□ -0.08
CCDC88C-204ENST00000389857 RGS22Q8NE09 1264 aa14.55□□□□□ -0.08
CCDC88C-204ENST00000389857 NGLY1Q96IV0 654 aa14.55□□□□□ -0.08
CCDC88C-204ENST00000389857 TACC1O75410 805 aa14.55□□□□□ -0.08
CCDC88C-204ENST00000389857 RTN1Q16799 776 aa14.55□□□□□ -0.08
CCDC88C-204ENST00000389857 CCDC14Q49A88 953 aa14.55□□□□□ -0.08
CCDC88C-204ENST00000389857 MSL1Q68DK7 614 aa14.55□□□□□ -0.08
CCDC88C-204ENST00000389857 CCDC63Q8NA47 563 aa14.55□□□□□ -0.08
CCDC88C-204ENST00000389857 GTPBP4Q9BZE4 634 aaKnown RBP14.55□□□□□ -0.08
CCDC88C-204ENST00000389857 ODF2LQ9ULJ1 636 aa14.55□□□□□ -0.08
CCDC88C-204ENST00000389857 DYNC1I1O14576 645 aa14.55□□□□□ -0.08
CCDC88C-204ENST00000389857 CCDC129Q6ZRS4 1044 aa14.55□□□□□ -0.08
CCDC88C-204ENST00000389857 HEATR3Q7Z4Q2 680 aa14.55□□□□□ -0.08
CCDC88C-204ENST00000389857 PSMA7O14818 248 aa14.54□□□□□ -0.08
CCDC88C-204ENST00000389857 SLC4A8Q2Y0W8 1093 aa14.54□□□□□ -0.08
CCDC88C-204ENST00000389857 BMP2KLQ5H9B9 411 aa14.54□□□□□ -0.08
CCDC88C-204ENST00000389857 SNAPC4Q5SXM2 1469 aa14.54□□□□□ -0.08
CCDC88C-204ENST00000389857 CTAGE9A4FU28 777 aa14.54□□□□□ -0.08
CCDC88C-204ENST00000389857 TUBB4BP68371 445 aa14.54□□□□□ -0.08
CCDC88C-204ENST00000389857 MAPK8IP2Q13387 824 aaPredicted RBP14.54□□□□□ -0.08
CCDC88C-204ENST00000389857 TTC22Q5TAA0 569 aa14.54□□□□□ -0.08
CCDC88C-204ENST00000389857 STX8Q9UNK0 236 aa14.54□□□□□ -0.08
CCDC88C-204ENST00000389857 LARP6Q9BRS8 491 aaKnown RBP14.54□□□□□ -0.08
CCDC88C-204ENST00000389857 ZSCAN22P10073 491 aaPredicted RBP14.54□□□□□ -0.08
CCDC88C-204ENST00000389857 APBB1IPQ7Z5R6 666 aaPredicted RBP14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms