RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 KRBA2Q6ZNG9 492 aa16.52■□□□□ 0.23
RTF1-201ENST00000389629 CTNNA3Q9UI47 895 aa16.52■□□□□ 0.23
RTF1-201ENST00000389629 AMOTL2Q9Y2J4 779 aa16.52■□□□□ 0.23
RTF1-201ENST00000389629 CAPN2P17655 700 aa16.51■□□□□ 0.23
RTF1-201ENST00000389629 ZSCAN25Q6NSZ9 544 aa16.51■□□□□ 0.23
RTF1-201ENST00000389629 PDLIM2Q96JY6 352 aa16.51■□□□□ 0.23
RTF1-201ENST00000389629 GOLIM4O00461 696 aa16.51■□□□□ 0.23
RTF1-201ENST00000389629 RAI14Q9P0K7 980 aa16.51■□□□□ 0.23
RTF1-201ENST00000389629 CLTCL1P53675 1640 aa16.51■□□□□ 0.23
RTF1-201ENST00000389629 EDC4Q6P2E9 1401 aaKnown RBP16.51■□□□□ 0.23
RTF1-201ENST00000389629 IMMTQ16891 758 aaKnown RBP16.51■□□□□ 0.23
RTF1-201ENST00000389629 NRBP1Q9UHY1 535 aa16.51■□□□□ 0.23
RTF1-201ENST00000389629 NBPF7P0C2Y1 421 aaPredicted RBP16.51■□□□□ 0.23
RTF1-201ENST00000389629 CLEC17AQ6ZS10 378 aa16.51■□□□□ 0.23
RTF1-201ENST00000389629 GBP3Q9H0R5 595 aa16.51■□□□□ 0.23
RTF1-201ENST00000389629 HYPKQ9NX55 129 aa16.51■□□□□ 0.23
RTF1-201ENST00000389629 IRX3P78415 501 aaPredicted RBP16.5■□□□□ 0.23
RTF1-201ENST00000389629 FAM227BQ96M60 508 aa16.5■□□□□ 0.23
RTF1-201ENST00000389629 CEP126Q9P2H0 1117 aa16.5■□□□□ 0.23
RTF1-201ENST00000389629 MARCH6O60337 910 aa16.5■□□□□ 0.23
RTF1-201ENST00000389629 RGS12O14924 1447 aa16.5■□□□□ 0.23
RTF1-201ENST00000389629 HAND2P61296 217 aa16.5■□□□□ 0.23
RTF1-201ENST00000389629 E9PCH4 1651 aa16.49■□□□□ 0.23
RTF1-201ENST00000389629 IFIT1P09914 478 aaKnown RBP16.49■□□□□ 0.23
RTF1-201ENST00000389629 RASEFQ8IZ41 740 aa16.49■□□□□ 0.23
RTF1-201ENST00000389629 OSBPL3Q9H4L5 887 aa16.49■□□□□ 0.23
RTF1-201ENST00000389629 KIAA0232Q92628 1395 aa16.49■□□□□ 0.23
RTF1-201ENST00000389629 KIAA1524Q8TCG1 905 aa16.49■□□□□ 0.23
RTF1-201ENST00000389629 RASSF4Q9H2L5 321 aa16.49■□□□□ 0.23
RTF1-201ENST00000389629 AOX1Q06278 1338 aa16.49■□□□□ 0.23
RTF1-201ENST00000389629 GOLGA8BA8MQT2 603 aa16.49■□□□□ 0.23
RTF1-201ENST00000389629 ME3Q16798 604 aa16.49■□□□□ 0.23
RTF1-201ENST00000389629 MTMR6Q9Y217 621 aa16.49■□□□□ 0.23
RTF1-201ENST00000389629 PTCH1Q13635 1447 aa16.49■□□□□ 0.23
RTF1-201ENST00000389629 TATP17735 454 aaPredicted RBP16.48■□□□□ 0.23
RTF1-201ENST00000389629 USP8P40818 1118 aa16.48■□□□□ 0.23
RTF1-201ENST00000389629 CNNM3Q8NE01 707 aa16.48■□□□□ 0.23
RTF1-201ENST00000389629 TBC1D2BQ9UPU7 963 aa16.48■□□□□ 0.23
RTF1-201ENST00000389629 CDR1P51861 262 aa16.48■□□□□ 0.23
RTF1-201ENST00000389629 SMARCC1Q92922 1105 aaPredicted RBP16.48■□□□□ 0.23
RTF1-201ENST00000389629 USP44Q9H0E7 712 aa16.48■□□□□ 0.23
RTF1-201ENST00000389629 VPS18Q9P253 973 aa16.48■□□□□ 0.23
RTF1-201ENST00000389629 LAMC1P11047 1609 aa16.48■□□□□ 0.23
RTF1-201ENST00000389629 ERCC6LQ2NKX8 1250 aa16.48■□□□□ 0.23
RTF1-201ENST00000389629 LEO1Q8WVC0 666 aaPredicted RBP16.48■□□□□ 0.23
RTF1-201ENST00000389629 CCDC47Q96A33 483 aaKnown RBP16.48■□□□□ 0.23
RTF1-201ENST00000389629 GRM8O00222 908 aa16.48■□□□□ 0.23
RTF1-201ENST00000389629 UBE3BQ7Z3V4 1068 aa16.48■□□□□ 0.23
RTF1-201ENST00000389629 MRPS27Q92552 414 aaKnown RBP16.48■□□□□ 0.23
RTF1-201ENST00000389629 CLSTN2Q9H4D0 955 aa16.48■□□□□ 0.23
RTF1-201ENST00000389629 SLC27A2O14975 620 aa16.47■□□□□ 0.23
RTF1-201ENST00000389629 DDIT3P35638 169 aa16.47■□□□□ 0.23
RTF1-201ENST00000389629 UTP14AQ9BVJ6 771 aaKnown RBP16.47■□□□□ 0.23
RTF1-201ENST00000389629 ORC3Q9UBD5 711 aaPredicted RBP16.47■□□□□ 0.23
RTF1-201ENST00000389629 A0A087WZG4 1122 aa16.47■□□□□ 0.23
RTF1-201ENST00000389629 ATP5J2-PTCD1G3V325 749 aa16.47■□□□□ 0.23
RTF1-201ENST00000389629 PTCD1O75127 700 aaKnown RBP16.47■□□□□ 0.23
RTF1-201ENST00000389629 TRHP20396 242 aaPredicted RBP16.47■□□□□ 0.23
RTF1-201ENST00000389629 EVCP57679 992 aa16.47■□□□□ 0.23
RTF1-201ENST00000389629 PTH1RQ03431 593 aa16.47■□□□□ 0.23
RTF1-201ENST00000389629 FLT4P35916 1363 aa16.47■□□□□ 0.23
RTF1-201ENST00000389629 CCDC82Q8N4S0 544 aa16.47■□□□□ 0.23
RTF1-201ENST00000389629 ZNHIT6Q9NWK9 470 aaKnown RBP16.47■□□□□ 0.23
RTF1-201ENST00000389629 SART3Q15020 963 aaKnown RBP16.47■□□□□ 0.23
RTF1-201ENST00000389629 CCDC57Q2TAC2 916 aa16.47■□□□□ 0.23
RTF1-201ENST00000389629 CHST3Q7LGC8 479 aa16.47■□□□□ 0.23
RTF1-201ENST00000389629 RBM33Q96EV2 1170 aaKnown RBP16.47■□□□□ 0.23
RTF1-201ENST00000389629 CDKL5O76039 1030 aa16.46■□□□□ 0.23
RTF1-201ENST00000389629 CCDC181Q5TID7 509 aa16.46■□□□□ 0.23
RTF1-201ENST00000389629 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.46■□□□□ 0.23
RTF1-201ENST00000389629 KARSQ15046 597 aaKnown RBP16.46■□□□□ 0.23
RTF1-201ENST00000389629 POGZQ7Z3K3 1410 aa16.46■□□□□ 0.23
RTF1-201ENST00000389629 MAP3K4Q9Y6R4 1608 aa16.46■□□□□ 0.23
RTF1-201ENST00000389629 MNAT1P51948 309 aa16.46■□□□□ 0.23
RTF1-201ENST00000389629 CABP4P57796 275 aa16.46■□□□□ 0.23
RTF1-201ENST00000389629 KSR2Q6VAB6 950 aa16.46■□□□□ 0.23
RTF1-201ENST00000389629 TTC6Q86TZ1 520 aa16.46■□□□□ 0.23
RTF1-201ENST00000389629 CARD6Q9BX69 1037 aa16.46■□□□□ 0.23
RTF1-201ENST00000389629 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.46■□□□□ 0.23
RTF1-201ENST00000389629 SNRKQ9NRH2 765 aa16.46■□□□□ 0.23
RTF1-201ENST00000389629 APOBRQ0VD83 1088 aa16.46■□□□□ 0.23
RTF1-201ENST00000389629 TRIM22Q8IYM9 498 aa16.46■□□□□ 0.23
RTF1-201ENST00000389629 PUF60Q9UHX1 559 aaKnown RBP16.46■□□□□ 0.23
RTF1-201ENST00000389629 SSH2Q76I76 1423 aa16.46■□□□□ 0.23
RTF1-201ENST00000389629 NLRP1Q9C000 1473 aa16.46■□□□□ 0.22
RTF1-201ENST00000389629 ALDH1L1O75891 902 aa16.45■□□□□ 0.22
RTF1-201ENST00000389629 XBP1P17861 261 aa16.45■□□□□ 0.22
RTF1-201ENST00000389629 RPS6KB1P23443 525 aa16.45■□□□□ 0.22
RTF1-201ENST00000389629 ZC3H6P61129 1189 aaKnown RBP16.45■□□□□ 0.22
RTF1-201ENST00000389629 NUP133Q8WUM0 1156 aa16.45■□□□□ 0.22
RTF1-201ENST00000389629 MTMR7Q9Y216 660 aa16.45■□□□□ 0.22
RTF1-201ENST00000389629 MARCKSP29966 332 aaPredicted RBP16.45■□□□□ 0.22
RTF1-201ENST00000389629 SHTN1A0MZ66 631 aa16.45■□□□□ 0.22
RTF1-201ENST00000389629 KIAA1328Q86T90 577 aa16.45■□□□□ 0.22
RTF1-201ENST00000389629 A0A1B0GVL5 298 aa16.45■□□□□ 0.22
RTF1-201ENST00000389629 CYP2E1P05181 493 aaPredicted RBP16.45■□□□□ 0.22
RTF1-201ENST00000389629 AMOTQ4VCS5 1084 aa16.45■□□□□ 0.22
RTF1-201ENST00000389629 CCDC148Q8NFR7 591 aa16.45■□□□□ 0.22
RTF1-201ENST00000389629 NEK11Q8NG66 645 aa16.45■□□□□ 0.22
RTF1-201ENST00000389629 MAGEC2Q9UBF1 373 aaPredicted RBP16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms