RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 PIK3C2AO00443 1686 aa17.23■□□□□ 0.35
VPS9D1-201ENST00000389386 HAP1P54257 671 aaPredicted RBP17.23■□□□□ 0.35
VPS9D1-201ENST00000389386 TPM4P67936 248 aa17.23■□□□□ 0.35
VPS9D1-201ENST00000389386 POLR3GO15318 223 aaPredicted RBP17.23■□□□□ 0.35
VPS9D1-201ENST00000389386 CAVIN2O95810 425 aa17.23■□□□□ 0.35
VPS9D1-201ENST00000389386 CPA1P15085 419 aa17.23■□□□□ 0.35
VPS9D1-201ENST00000389386 HOXC9P31274 260 aa17.23■□□□□ 0.35
VPS9D1-201ENST00000389386 IQCB1Q15051 598 aa17.23■□□□□ 0.35
VPS9D1-201ENST00000389386 TSPYL4Q9UJ04 414 aa17.23■□□□□ 0.35
VPS9D1-201ENST00000389386 SGSM2O43147 1006 aa17.22■□□□□ 0.35
VPS9D1-201ENST00000389386 UBXN6Q9BZV1 441 aa17.22■□□□□ 0.35
VPS9D1-201ENST00000389386 LSG1Q9H089 658 aaKnown RBP17.22■□□□□ 0.35
VPS9D1-201ENST00000389386 ST5P78524 1137 aa17.22■□□□□ 0.35
VPS9D1-201ENST00000389386 FAM173BQ6P4H8 233 aa17.22■□□□□ 0.35
VPS9D1-201ENST00000389386 GEMIN8Q9NWZ8 242 aaKnown RBP17.22■□□□□ 0.35
VPS9D1-201ENST00000389386 C1orf167Q5SNV9 1468 aa17.22■□□□□ 0.35
VPS9D1-201ENST00000389386 DHX16O60231 1041 aaKnown RBP17.21■□□□□ 0.35
VPS9D1-201ENST00000389386 GNAI2P04899 355 aa17.21■□□□□ 0.35
VPS9D1-201ENST00000389386 SLC4A2P04920 1241 aa17.21■□□□□ 0.35
VPS9D1-201ENST00000389386 ST3GAL1Q11201 340 aa17.21■□□□□ 0.35
VPS9D1-201ENST00000389386 ARHGAP29Q52LW3 1261 aa17.21■□□□□ 0.35
VPS9D1-201ENST00000389386 SMARCE1Q969G3 411 aa17.21■□□□□ 0.35
VPS9D1-201ENST00000389386 USP16Q9Y5T5 823 aa17.21■□□□□ 0.35
VPS9D1-201ENST00000389386 MYO1CO00159 1063 aa17.21■□□□□ 0.35
VPS9D1-201ENST00000389386 G2E3Q7L622 706 aa17.21■□□□□ 0.35
VPS9D1-201ENST00000389386 ZSCAN31Q96LW9 406 aaPredicted RBP17.21■□□□□ 0.35
VPS9D1-201ENST00000389386 LCMT1Q9UIC8 334 aa17.21■□□□□ 0.35
VPS9D1-201ENST00000389386 LRRFIP2Q9Y608 721 aaKnown RBP17.21■□□□□ 0.35
VPS9D1-201ENST00000389386 AOX1Q06278 1338 aa17.21■□□□□ 0.35
VPS9D1-201ENST00000389386 F6X3S4 739 aa17.2■□□□□ 0.34
VPS9D1-201ENST00000389386 TRIM66O15016 1216 aa17.2■□□□□ 0.34
VPS9D1-201ENST00000389386 CASTP20810 708 aaKnown RBP17.2■□□□□ 0.34
VPS9D1-201ENST00000389386 SH2B1Q9NRF2 756 aaPredicted RBP17.2■□□□□ 0.34
VPS9D1-201ENST00000389386 NPHP3Q7Z494 1330 aa17.2■□□□□ 0.34
VPS9D1-201ENST00000389386 GOLGA6L4A6NEF3 574 aa17.2■□□□□ 0.34
VPS9D1-201ENST00000389386 KRT28Q7Z3Y7 464 aa17.2■□□□□ 0.34
VPS9D1-201ENST00000389386 FILIP1Q7Z7B0 1213 aa17.2■□□□□ 0.34
VPS9D1-201ENST00000389386 FERMT3Q86UX7 667 aa17.2■□□□□ 0.34
VPS9D1-201ENST00000389386 GOLGA6L19H0YKK7 550 aa17.2■□□□□ 0.34
VPS9D1-201ENST00000389386 NR1I2O75469 434 aa17.2■□□□□ 0.34
VPS9D1-201ENST00000389386 CASQ1P31415 396 aa17.2■□□□□ 0.34
VPS9D1-201ENST00000389386 SNW1Q13573 536 aaKnown RBP17.2■□□□□ 0.34
VPS9D1-201ENST00000389386 ZSCAN26Q16670 478 aa17.2■□□□□ 0.34
VPS9D1-201ENST00000389386 SLC4A10Q6U841 1118 aa17.2■□□□□ 0.34
VPS9D1-201ENST00000389386 TMCO3Q6UWJ1 677 aa17.2■□□□□ 0.34
VPS9D1-201ENST00000389386 C10orf67Q8IYJ2 551 aa17.2■□□□□ 0.34
VPS9D1-201ENST00000389386 SCAND2PQ9GZW5 306 aaPredicted RBP17.2■□□□□ 0.34
VPS9D1-201ENST00000389386 ATG3Q9NT62 314 aa17.2■□□□□ 0.34
VPS9D1-201ENST00000389386 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.2■□□□□ 0.34
VPS9D1-201ENST00000389386 IGSF1Q8N6C5 1336 aa17.19■□□□□ 0.34
VPS9D1-201ENST00000389386 LARP1BQ659C4 914 aaKnown RBP17.19■□□□□ 0.34
VPS9D1-201ENST00000389386 CDC37L1Q7L3B6 337 aa17.19■□□□□ 0.34
VPS9D1-201ENST00000389386 ARHGEF10O15013 1369 aa17.19■□□□□ 0.34
VPS9D1-201ENST00000389386 CRB1P82279 1406 aa17.19■□□□□ 0.34
VPS9D1-201ENST00000389386 RGPD1P0DJD0 1748 aa17.19■□□□□ 0.34
VPS9D1-201ENST00000389386 CCT4P50991 539 aaKnown RBP17.19■□□□□ 0.34
VPS9D1-201ENST00000389386 VPS53Q5VIR6 699 aa17.19■□□□□ 0.34
VPS9D1-201ENST00000389386 CADPS2Q86UW7 1296 aa17.19■□□□□ 0.34
VPS9D1-201ENST00000389386 PNMA6EA0A0J9YXQ4 647 aa17.18■□□□□ 0.34
VPS9D1-201ENST00000389386 CTR9Q6PD62 1173 aa17.18■□□□□ 0.34
VPS9D1-201ENST00000389386 CCDC191Q8NCU4 936 aa17.18■□□□□ 0.34
VPS9D1-201ENST00000389386 SPATA32Q96LK8 384 aa17.18■□□□□ 0.34
VPS9D1-201ENST00000389386 PDRG1Q9NUG6 133 aa17.18■□□□□ 0.34
VPS9D1-201ENST00000389386 TFIP11Q9UBB9 837 aaKnown RBP17.18■□□□□ 0.34
VPS9D1-201ENST00000389386 ORC3Q9UBD5 711 aaPredicted RBP17.18■□□□□ 0.34
VPS9D1-201ENST00000389386 GPS2Q13227 327 aa17.18■□□□□ 0.34
VPS9D1-201ENST00000389386 LEO1Q8WVC0 666 aaPredicted RBP17.18■□□□□ 0.34
VPS9D1-201ENST00000389386 ZCCHC17Q9NP64 241 aaKnown RBP17.18■□□□□ 0.34
VPS9D1-201ENST00000389386 ARGLU1Q9NWB6 273 aaPredicted RBP17.18■□□□□ 0.34
VPS9D1-201ENST00000389386 MST1RQ04912 1400 aa17.17■□□□□ 0.34
VPS9D1-201ENST00000389386 ATP8B1O43520 1251 aa17.17■□□□□ 0.34
VPS9D1-201ENST00000389386 ATP8B2P98198 1209 aa17.17■□□□□ 0.34
VPS9D1-201ENST00000389386 ME3Q16798 604 aa17.17■□□□□ 0.34
VPS9D1-201ENST00000389386 E4F1Q66K89 784 aaPredicted RBP17.17■□□□□ 0.34
VPS9D1-201ENST00000389386 NECAB1Q8N987 351 aa17.17■□□□□ 0.34
VPS9D1-201ENST00000389386 C11orf57Q6ZUT1 292 aaPredicted RBP17.16■□□□□ 0.34
VPS9D1-201ENST00000389386 PGBD1Q96JS3 809 aa17.16■□□□□ 0.34
VPS9D1-201ENST00000389386 PPP1R13BQ96KQ4 1090 aa17.16■□□□□ 0.34
VPS9D1-201ENST00000389386 TMX1Q9H3N1 280 aa17.16■□□□□ 0.34
VPS9D1-201ENST00000389386 MAP4K4O95819 1239 aaPredicted RBP17.16■□□□□ 0.34
VPS9D1-201ENST00000389386 GTF2A1P52655 376 aaPredicted RBP17.16■□□□□ 0.34
VPS9D1-201ENST00000389386 GYS2P54840 703 aa17.16■□□□□ 0.34
VPS9D1-201ENST00000389386 XIRP1Q702N8 1843 aaKnown RBP17.15■□□□□ 0.34
VPS9D1-201ENST00000389386 ICE2Q659A1 982 aa17.15■□□□□ 0.34
VPS9D1-201ENST00000389386 LRRC59Q96AG4 307 aaKnown RBP17.15■□□□□ 0.34
VPS9D1-201ENST00000389386 KDRP35968 1356 aa17.15■□□□□ 0.34
VPS9D1-201ENST00000389386 IL17REQ8NFR9 667 aa17.15■□□□□ 0.34
VPS9D1-201ENST00000389386 UBXN4Q92575 508 aa17.15■□□□□ 0.34
VPS9D1-201ENST00000389386 SYTL4Q96C24 671 aaPredicted RBP17.15■□□□□ 0.34
VPS9D1-201ENST00000389386 ZSWIM6Q9HCJ5 1215 aa17.15■□□□□ 0.34
VPS9D1-201ENST00000389386 CWC15Q9P013 229 aaKnown RBP17.15■□□□□ 0.34
VPS9D1-201ENST00000389386 OAS2P29728 719 aaKnown RBP17.14■□□□□ 0.33
VPS9D1-201ENST00000389386 MMP14P50281 582 aa17.14■□□□□ 0.33
VPS9D1-201ENST00000389386 GSDMDP57764 484 aa17.14■□□□□ 0.33
VPS9D1-201ENST00000389386 ADCK5Q3MIX3 580 aa17.14■□□□□ 0.33
VPS9D1-201ENST00000389386 FBXO18Q8NFZ0 1043 aa17.14■□□□□ 0.33
VPS9D1-201ENST00000389386 JAKMIP1Q96N16 626 aaKnown RBP17.14■□□□□ 0.33
VPS9D1-201ENST00000389386 SEC31AO94979 1220 aaKnown RBP17.14■□□□□ 0.33
VPS9D1-201ENST00000389386 SRLQ86TD4 932 aa17.14■□□□□ 0.33
VPS9D1-201ENST00000389386 REXO1L1PQ8IX06 675 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms