RNA–Protein interactions for RNA: ENST00000378725.3

SSU72-203, Transcript of SSU72 homolog, RNA polymerase II CTD phosphatase, humanhuman

TSL 2

Gene SSU72, Length 619 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72-203ENST00000378725 DDX46Q7L014 1031 aaKnown RBP23.64■■□□□ 1.37
SSU72-203ENST00000378725 DZIP1LQ8IYY4 767 aaKnown RBP23.64■■□□□ 1.37
SSU72-203ENST00000378725 C7orf43Q8WVR3 580 aa23.64■■□□□ 1.37
SSU72-203ENST00000378725 LAMB2P55268 1798 aa23.63■■□□□ 1.37
SSU72-203ENST00000378725 CCDC152Q4G0S7 254 aa23.63■■□□□ 1.37
SSU72-203ENST00000378725 BBOX1O75936 387 aa23.62■■□□□ 1.37
SSU72-203ENST00000378725 TMEM57Q8N5G2 664 aa23.62■■□□□ 1.37
SSU72-203ENST00000378725 KAZALD1Q96I82 304 aa23.62■■□□□ 1.37
SSU72-203ENST00000378725 MS4A1P11836 297 aa23.61■■□□□ 1.37
SSU72-203ENST00000378725 RLBP1P12271 317 aa23.61■■□□□ 1.37
SSU72-203ENST00000378725 GRAPQ13588 217 aa23.61■■□□□ 1.37
SSU72-203ENST00000378725 EPHA10Q5JZY3 1008 aa23.61■■□□□ 1.37
SSU72-203ENST00000378725 GRAPLQ8TC17 118 aaPredicted RBP23.61■■□□□ 1.37
SSU72-203ENST00000378725 SUCLG2Q96I99 432 aa23.61■■□□□ 1.37
SSU72-203ENST00000378725 PLIN1O60240 522 aa23.6■■□□□ 1.37
SSU72-203ENST00000378725 FTSJ3Q8IY81 847 aaKnown RBP23.6■■□□□ 1.37
SSU72-203ENST00000378725 RTL9Q8NET4 1388 aa23.6■■□□□ 1.37
SSU72-203ENST00000378725 C21orf2O43822 256 aa23.59■■□□□ 1.37
SSU72-203ENST00000378725 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.59■■□□□ 1.37
SSU72-203ENST00000378725 SEC31BQ9NQW1 1179 aa23.59■■□□□ 1.37
SSU72-203ENST00000378725 CELF1Q92879 486 aaKnown RBP23.58■■□□□ 1.37
SSU72-203ENST00000378725 CCDC85AQ96PX6 553 aaPredicted RBP23.58■■□□□ 1.37
SSU72-203ENST00000378725 GREM2Q9H772 168 aa23.58■■□□□ 1.37
SSU72-203ENST00000378725 SLX4Q8IY92 1834 aa23.58■■□□□ 1.37
SSU72-203ENST00000378725 PPEF1O14829 653 aaPredicted RBP23.57■■□□□ 1.36
SSU72-203ENST00000378725 RPS8P62241 208 aaKnown RBP23.57■■□□□ 1.36
SSU72-203ENST00000378725 RABL6Q3YEC7 729 aaPredicted RBP23.57■■□□□ 1.36
SSU72-203ENST00000378725 SOGA3Q5TF21 947 aa23.57■■□□□ 1.36
SSU72-203ENST00000378725 LMBR1LQ6UX01 489 aa23.57■■□□□ 1.36
SSU72-203ENST00000378725 PANK1Q8TE04 598 aa23.57■■□□□ 1.36
SSU72-203ENST00000378725 MEIS3Q99687 375 aa23.57■■□□□ 1.36
SSU72-203ENST00000378725 HDAC5Q9UQL6 1122 aa23.57■■□□□ 1.36
SSU72-203ENST00000378725 GNAI3P08754 354 aa23.56■■□□□ 1.36
SSU72-203ENST00000378725 UBTFL1P0CB47 393 aaPredicted RBP23.56■■□□□ 1.36
SSU72-203ENST00000378725 PDE3AQ14432 1141 aa23.56■■□□□ 1.36
SSU72-203ENST00000378725 CC2D2BQ6DHV5 1058 aa23.56■■□□□ 1.36
SSU72-203ENST00000378725 TMC4Q7Z404 712 aa23.56■■□□□ 1.36
SSU72-203ENST00000378725 SP8Q8IXZ3 490 aa23.56■■□□□ 1.36
SSU72-203ENST00000378725 ZNF219Q9P2Y4 722 aaPredicted RBP23.56■■□□□ 1.36
SSU72-203ENST00000378725 ATP6V0A2Q9Y487 856 aa23.56■■□□□ 1.36
SSU72-203ENST00000378725 ARFGEF1Q9Y6D6 1849 aa23.56■■□□□ 1.36
SSU72-203ENST00000378725 ARHGAP27Q6ZUM4 889 aa23.55■■□□□ 1.36
SSU72-203ENST00000378725 ANKRD44Q8N8A2 993 aa23.55■■□□□ 1.36
SSU72-203ENST00000378725 BICC1Q9H694 974 aaKnown RBP23.55■■□□□ 1.36
SSU72-203ENST00000378725 ZBTB7BO15156 539 aaPredicted RBP23.54■■□□□ 1.36
SSU72-203ENST00000378725 ITGA6P23229 1130 aa23.54■■□□□ 1.36
SSU72-203ENST00000378725 FAM161AQ3B820 660 aa23.54■■□□□ 1.36
SSU72-203ENST00000378725 CDC5LQ99459 802 aaKnown RBP23.54■■□□□ 1.36
SSU72-203ENST00000378725 GRIPAP1Q4V328 841 aa23.53■■□□□ 1.36
SSU72-203ENST00000378725 CCDC93Q567U6 631 aa23.53■■□□□ 1.36
SSU72-203ENST00000378725 OLFM4Q6UX06 510 aa23.53■■□□□ 1.36
SSU72-203ENST00000378725 ANKRD18AQ8IVF6 992 aa23.53■■□□□ 1.36
SSU72-203ENST00000378725 ITPRIPQ8IWB1 547 aa23.53■■□□□ 1.36
SSU72-203ENST00000378725 COL4A1P02462 1669 aa23.52■■□□□ 1.36
SSU72-203ENST00000378725 IFIT5Q13325 482 aaKnown RBP23.52■■□□□ 1.36
SSU72-203ENST00000378725 RTKN2Q8IZC4 609 aa23.52■■□□□ 1.36
SSU72-203ENST00000378725 SNED1Q8TER0 1413 aa23.51■■□□□ 1.35
SSU72-203ENST00000378725 ANKRD18BA2A2Z9 1011 aa23.51■■□□□ 1.35
SSU72-203ENST00000378725 MVPQ14764 893 aaKnown RBP23.51■■□□□ 1.35
SSU72-203ENST00000378725 C20orf194Q5TEA3 1177 aa23.51■■□□□ 1.35
SSU72-203ENST00000378725 LRRFIP2Q9Y608 721 aaKnown RBP23.51■■□□□ 1.35
SSU72-203ENST00000378725 NFKBIEO00221 500 aa23.5■■□□□ 1.35
SSU72-203ENST00000378725 RRP1P56182 461 aaKnown RBP23.5■■□□□ 1.35
SSU72-203ENST00000378725 CCDC57Q2TAC2 916 aa23.5■■□□□ 1.35
SSU72-203ENST00000378725 SLC51AQ86UW1 340 aa23.5■■□□□ 1.35
SSU72-203ENST00000378725 TMX4Q9H1E5 349 aaPredicted RBP23.5■■□□□ 1.35
SSU72-203ENST00000378725 BSDC1Q9NW68 430 aaPredicted RBP23.5■■□□□ 1.35
SSU72-203ENST00000378725 CHMP3Q9Y3E7 222 aa23.5■■□□□ 1.35
SSU72-203ENST00000378725 MYH3P11055 1940 aa23.5■■□□□ 1.35
SSU72-203ENST00000378725 LTBP3Q9NS15 1303 aa23.5■■□□□ 1.35
SSU72-203ENST00000378725 GNAI2P04899 355 aa23.49■■□□□ 1.35
SSU72-203ENST00000378725 IGHMBP2P38935 993 aaKnown RBP23.48■■□□□ 1.35
SSU72-203ENST00000378725 PSMD1Q99460 953 aa23.48■■□□□ 1.35
SSU72-203ENST00000378725 COG6Q9Y2V7 657 aa23.48■■□□□ 1.35
SSU72-203ENST00000378725 TAF1P21675 1872 aa23.47■■□□□ 1.35
SSU72-203ENST00000378725 CACNA1SQ13698 1873 aa23.47■■□□□ 1.35
SSU72-203ENST00000378725 FKBP4Q02790 459 aaKnown RBP eCLIP23.47■■□□□ 1.35
SSU72-203ENST00000378725 DDX19BQ9UMR2 479 aa23.47■■□□□ 1.35
SSU72-203ENST00000378725 RASSF7Q02833 373 aa23.46■■□□□ 1.35
SSU72-203ENST00000378725 RTFDC1Q9BY42 306 aaPredicted RBP23.46■■□□□ 1.35
SSU72-203ENST00000378725 TAOK3Q9H2K8 898 aa23.46■■□□□ 1.35
SSU72-203ENST00000378725 RFX5P48382 616 aaPredicted RBP23.45■■□□□ 1.34
SSU72-203ENST00000378725 PRELPP51888 382 aa23.45■■□□□ 1.34
SSU72-203ENST00000378725 MTX1Q13505 466 aa23.45■■□□□ 1.34
SSU72-203ENST00000378725 MPNDQ8N594 471 aa23.45■■□□□ 1.34
SSU72-203ENST00000378725 MPHOSPH8Q99549 860 aa23.45■■□□□ 1.34
SSU72-203ENST00000378725 MINPP1Q9UNW1 487 aa23.45■■□□□ 1.34
SSU72-203ENST00000378725 GPSM2P81274 684 aa23.44■■□□□ 1.34
SSU72-203ENST00000378725 ZNF594Q96JF6 807 aaPredicted RBP23.44■■□□□ 1.34
SSU72-203ENST00000378725 CHMP4BQ9H444 224 aaKnown RBP23.44■■□□□ 1.34
SSU72-203ENST00000378725 PODXL2Q9NZ53 605 aa23.44■■□□□ 1.34
SSU72-203ENST00000378725 FER1L6Q2WGJ9 1857 aa23.44■■□□□ 1.34
SSU72-203ENST00000378725 GOLGB1Q14789 3259 aaKnown RBP23.43■■□□□ 1.34
SSU72-203ENST00000378725 LMNB1P20700 586 aa23.43■■□□□ 1.34
SSU72-203ENST00000378725 DPP8Q6V1X1 898 aaPredicted RBP23.43■■□□□ 1.34
SSU72-203ENST00000378725 ZBTB40Q9NUA8 1239 aa23.43■■□□□ 1.34
SSU72-203ENST00000378725 NSFL1CQ9UNZ2 370 aaKnown RBP23.43■■□□□ 1.34
SSU72-203ENST00000378725 LRRC37AA6NMS7 1700 aa23.42■■□□□ 1.34
SSU72-203ENST00000378725 TAF7LQ5H9L4 462 aa23.42■■□□□ 1.34
SSU72-203ENST00000378725 LDHAL6AQ6ZMR3 332 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms