RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 HSP90B1P14625 803 aaKnown RBP16.94■□□□□ 0.3
VPS28-202ENST00000377348 CTSWP56202 376 aa16.94■□□□□ 0.3
VPS28-202ENST00000377348 GRAPQ13588 217 aa16.94■□□□□ 0.3
VPS28-202ENST00000377348 C9orf131Q5VYM1 1079 aa16.94■□□□□ 0.3
VPS28-202ENST00000377348 GRAPLQ8TC17 118 aaPredicted RBP16.94■□□□□ 0.3
VPS28-202ENST00000377348 RNF181Q9P0P0 153 aa16.94■□□□□ 0.3
VPS28-202ENST00000377348 TAF1P21675 1872 aa16.94■□□□□ 0.3
VPS28-202ENST00000377348 GRM8O00222 908 aa16.93■□□□□ 0.3
VPS28-202ENST00000377348 SOGA3Q5TF21 947 aa16.93■□□□□ 0.3
VPS28-202ENST00000377348 TAOK3Q9H2K8 898 aa16.93■□□□□ 0.3
VPS28-202ENST00000377348 KIF16BQ96L93 1317 aa16.93■□□□□ 0.3
VPS28-202ENST00000377348 FER1L6Q2WGJ9 1857 aa16.93■□□□□ 0.3
VPS28-202ENST00000377348 CCDC152Q4G0S7 254 aa16.92■□□□□ 0.3
VPS28-202ENST00000377348 TTLL11Q8NHH1 800 aa16.92■□□□□ 0.3
VPS28-202ENST00000377348 FRAT1Q92837 279 aaPredicted RBP16.92■□□□□ 0.3
VPS28-202ENST00000377348 C9orf78Q9NZ63 289 aaPredicted RBP16.92■□□□□ 0.3
VPS28-202ENST00000377348 TNNQ9UQP3 1299 aa16.92■□□□□ 0.3
VPS28-202ENST00000377348 ATP6V0A2Q9Y487 856 aa16.92■□□□□ 0.3
VPS28-202ENST00000377348 SNED1Q8TER0 1413 aa16.92■□□□□ 0.3
VPS28-202ENST00000377348 BBOX1O75936 387 aa16.91■□□□□ 0.3
VPS28-202ENST00000377348 LMNB1P20700 586 aa16.91■□□□□ 0.3
VPS28-202ENST00000377348 PLA2G12BQ9BX93 195 aa16.91■□□□□ 0.3
VPS28-202ENST00000377348 API5Q9BZZ5 524 aaKnown RBP16.91■□□□□ 0.3
VPS28-202ENST00000377348 GREM2Q9H772 168 aa16.91■□□□□ 0.3
VPS28-202ENST00000377348 NBPF7P0C2Y1 421 aaPredicted RBP16.9■□□□□ 0.3
VPS28-202ENST00000377348 FKBP4Q02790 459 aaKnown RBP eCLIP16.9■□□□□ 0.3
VPS28-202ENST00000377348 EPHA10Q5JZY3 1008 aa16.9■□□□□ 0.3
VPS28-202ENST00000377348 RTKN2Q8IZC4 609 aa16.9■□□□□ 0.3
VPS28-202ENST00000377348 ZNF277Q9NRM2 450 aaPredicted RBP16.9■□□□□ 0.3
VPS28-202ENST00000377348 LTBP3Q9NS15 1303 aa16.9■□□□□ 0.3
VPS28-202ENST00000377348 SBF1O95248 1867 aa16.89■□□□□ 0.29
VPS28-202ENST00000377348 TRIM27P14373 513 aa16.89■□□□□ 0.29
VPS28-202ENST00000377348 RPS8P62241 208 aaKnown RBP16.89■□□□□ 0.29
VPS28-202ENST00000377348 FOXO4P98177 505 aa16.89■□□□□ 0.29
VPS28-202ENST00000377348 SP8Q8IXZ3 490 aa16.89■□□□□ 0.29
VPS28-202ENST00000377348 ZNF784Q8NCA9 323 aaPredicted RBP16.89■□□□□ 0.29
VPS28-202ENST00000377348 ARHGAP45Q92619 1136 aa16.89■□□□□ 0.29
VPS28-202ENST00000377348 SUCLG2Q96I99 432 aa16.89■□□□□ 0.29
VPS28-202ENST00000377348 FAM161AQ3B820 660 aa16.88■□□□□ 0.29
VPS28-202ENST00000377348 CC2D2BQ6DHV5 1058 aa16.88■□□□□ 0.29
VPS28-202ENST00000377348 USP44Q9H0E7 712 aa16.88■□□□□ 0.29
VPS28-202ENST00000377348 CSF1RP07333 972 aa16.87■□□□□ 0.29
VPS28-202ENST00000377348 CCT4P50991 539 aaKnown RBP16.87■□□□□ 0.29
VPS28-202ENST00000377348 ATF7IPQ6VMQ6 1270 aa16.87■□□□□ 0.29
VPS28-202ENST00000377348 ZNF526Q8TF50 670 aaPredicted RBP16.87■□□□□ 0.29
VPS28-202ENST00000377348 CLUAP1Q96AJ1 413 aa16.87■□□□□ 0.29
VPS28-202ENST00000377348 KAZALD1Q96I82 304 aa16.87■□□□□ 0.29
VPS28-202ENST00000377348 PSMD1Q99460 953 aa16.87■□□□□ 0.29
VPS28-202ENST00000377348 TMX4Q9H1E5 349 aaPredicted RBP16.87■□□□□ 0.29
VPS28-202ENST00000377348 MYH3P11055 1940 aa16.87■□□□□ 0.29
VPS28-202ENST00000377348 UTYO14607 1347 aa16.87■□□□□ 0.29
VPS28-202ENST00000377348 IPO8O15397 1037 aaKnown RBP16.86■□□□□ 0.29
VPS28-202ENST00000377348 ITGA6P23229 1130 aa16.86■□□□□ 0.29
VPS28-202ENST00000377348 LMBR1LQ6UX01 489 aa16.86■□□□□ 0.29
VPS28-202ENST00000377348 TMC4Q7Z404 712 aa16.86■□□□□ 0.29
VPS28-202ENST00000377348 ANKRD18AQ8IVF6 992 aa16.86■□□□□ 0.29
VPS28-202ENST00000377348 MPNDQ8N594 471 aa16.86■□□□□ 0.29
VPS28-202ENST00000377348 CHMP3Q9Y3E7 222 aa16.86■□□□□ 0.29
VPS28-202ENST00000377348 RTL9Q8NET4 1388 aa16.86■□□□□ 0.29
VPS28-202ENST00000377348 CCDC88AQ3V6T2 1871 aa16.86■□□□□ 0.29
VPS28-202ENST00000377348 ZKSCAN2Q63HK3 967 aa16.85■□□□□ 0.29
VPS28-202ENST00000377348 DPP8Q6V1X1 898 aaPredicted RBP16.85■□□□□ 0.29
VPS28-202ENST00000377348 CDC5LQ99459 802 aaKnown RBP16.85■□□□□ 0.29
VPS28-202ENST00000377348 LRRC37AA6NMS7 1700 aa16.84■□□□□ 0.29
VPS28-202ENST00000377348 IARSP41252 1262 aaKnown RBP16.84■□□□□ 0.29
VPS28-202ENST00000377348 GPSM2P81274 684 aa16.84■□□□□ 0.29
VPS28-202ENST00000377348 GRIPAP1Q4V328 841 aa16.84■□□□□ 0.29
VPS28-202ENST00000377348 BICC1Q9H694 974 aaKnown RBP16.84■□□□□ 0.29
VPS28-202ENST00000377348 COL4A5P29400 1685 aa16.83■□□□□ 0.28
VPS28-202ENST00000377348 INTS3Q68E01 1043 aaKnown RBP16.83■□□□□ 0.28
VPS28-202ENST00000377348 TIAM2Q8IVF5 1701 aa16.83■□□□□ 0.28
VPS28-202ENST00000377348 NSFL1CQ9UNZ2 370 aaKnown RBP16.83■□□□□ 0.28
VPS28-202ENST00000377348 DUOX1Q9NRD9 1551 aa16.82■□□□□ 0.28
VPS28-202ENST00000377348 ANKRD18BA2A2Z9 1011 aa16.82■□□□□ 0.28
VPS28-202ENST00000377348 IGHMBP2P38935 993 aaKnown RBP16.82■□□□□ 0.28
VPS28-202ENST00000377348 AOC3Q16853 763 aa16.82■□□□□ 0.28
VPS28-202ENST00000377348 ANKRD44Q8N8A2 993 aa16.82■□□□□ 0.28
VPS28-202ENST00000377348 ZNF594Q96JF6 807 aaPredicted RBP16.82■□□□□ 0.28
VPS28-202ENST00000377348 MEIS3Q99687 375 aa16.82■□□□□ 0.28
VPS28-202ENST00000377348 RTFDC1Q9BY42 306 aaPredicted RBP16.82■□□□□ 0.28
VPS28-202ENST00000377348 BSDC1Q9NW68 430 aaPredicted RBP16.82■□□□□ 0.28
VPS28-202ENST00000377348 RCAN3Q9UKA8 241 aa16.82■□□□□ 0.28
VPS28-202ENST00000377348 PPIP5K2O43314 1243 aa16.81■□□□□ 0.28
VPS28-202ENST00000377348 IFIT5Q13325 482 aaKnown RBP16.81■□□□□ 0.28
VPS28-202ENST00000377348 LARGE2Q8N3Y3 721 aa16.81■□□□□ 0.28
VPS28-202ENST00000377348 TMEM57Q8N5G2 664 aa16.81■□□□□ 0.28
VPS28-202ENST00000377348 GPR101Q96P66 508 aaPredicted RBP16.81■□□□□ 0.28
VPS28-202ENST00000377348 POLLQ9UGP5 575 aa16.81■□□□□ 0.28
VPS28-202ENST00000377348 SPEF2Q9C093 1822 aa16.81■□□□□ 0.28
VPS28-202ENST00000377348 DICER1Q9UPY3 1922 aaKnown RBP16.8■□□□□ 0.28
VPS28-202ENST00000377348 ZC3H4Q9UPT8 1303 aaKnown RBP16.8■□□□□ 0.28
VPS28-202ENST00000377348 UBTFL1P0CB47 393 aaPredicted RBP16.8■□□□□ 0.28
VPS28-202ENST00000377348 RLBP1P12271 317 aa16.8■□□□□ 0.28
VPS28-202ENST00000377348 RABL6Q3YEC7 729 aaPredicted RBP16.8■□□□□ 0.28
VPS28-202ENST00000377348 GPBP1L1Q9HC44 474 aaPredicted RBP16.8■□□□□ 0.28
VPS28-202ENST00000377348 ANKIB1Q9P2G1 1089 aa16.8■□□□□ 0.28
VPS28-202ENST00000377348 MINPP1Q9UNW1 487 aa16.8■□□□□ 0.28
VPS28-202ENST00000377348 WTIPA6NIX2 430 aaPredicted RBP16.79■□□□□ 0.28
VPS28-202ENST00000377348 C6orf229H3BNL8 230 aa16.79■□□□□ 0.28
VPS28-202ENST00000377348 PLIN1O60240 522 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms