RNA–Protein interactions for RNA: ENST00000374943.8

HLA-DQB1-201, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

BASIC

Gene HLA-DQB1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-201ENST00000374943 HSPA4P34932 840 aa21.83■■□□□ 1.09
HLA-DQB1-201ENST00000374943 ATP6V1AP38606 617 aa21.83■■□□□ 1.09
HLA-DQB1-201ENST00000374943 LSG1Q9H089 658 aaKnown RBP21.83■■□□□ 1.09
HLA-DQB1-201ENST00000374943 CRKLP46109 303 aaKnown RBP21.82■■□□□ 1.08
HLA-DQB1-201ENST00000374943 SNRKQ9NRH2 765 aa21.82■■□□□ 1.08
HLA-DQB1-201ENST00000374943 ZNF34Q8IZ26 560 aa21.82■■□□□ 1.08
HLA-DQB1-201ENST00000374943 FAM89AQ96GI7 184 aa21.82■■□□□ 1.08
HLA-DQB1-201ENST00000374943 SBF2Q86WG5 1849 aa21.81■■□□□ 1.08
HLA-DQB1-201ENST00000374943 ITPK1Q13572 414 aa21.81■■□□□ 1.08
HLA-DQB1-201ENST00000374943 CCDC57Q2TAC2 916 aa21.81■■□□□ 1.08
HLA-DQB1-201ENST00000374943 CWC27Q6UX04 472 aaKnown RBP21.81■■□□□ 1.08
HLA-DQB1-201ENST00000374943 ARXQ96QS3 562 aa21.81■■□□□ 1.08
HLA-DQB1-201ENST00000374943 BOLA2Q9H3K6 86 aa21.81■■□□□ 1.08
HLA-DQB1-201ENST00000374943 PALD1Q9ULE6 856 aa21.81■■□□□ 1.08
HLA-DQB1-201ENST00000374943 DDX60Q8IY21 1712 aaKnown RBP21.81■■□□□ 1.08
HLA-DQB1-201ENST00000374943 LRP5O75197 1615 aa21.81■■□□□ 1.08
HLA-DQB1-201ENST00000374943 RXRBP28702 533 aa21.8■■□□□ 1.08
HLA-DQB1-201ENST00000374943 FRAT2O75474 233 aaPredicted RBP21.79■■□□□ 1.08
HLA-DQB1-201ENST00000374943 GPTP24298 496 aa21.79■■□□□ 1.08
HLA-DQB1-201ENST00000374943 KIAA1211Q6ZU35 1233 aa21.79■■□□□ 1.08
HLA-DQB1-201ENST00000374943 DBNDD2Q9BQY9 259 aa21.79■■□□□ 1.08
HLA-DQB1-201ENST00000374943 USP21Q9UK80 565 aa21.79■■□□□ 1.08
HLA-DQB1-201ENST00000374943 A0A0G2JS52 829 aa21.79■■□□□ 1.08
HLA-DQB1-201ENST00000374943 MCM2P49736 904 aa21.79■■□□□ 1.08
HLA-DQB1-201ENST00000374943 TBC1D2BQ9UPU7 963 aa21.79■■□□□ 1.08
HLA-DQB1-201ENST00000374943 AFF2P51816 1311 aa21.78■■□□□ 1.08
HLA-DQB1-201ENST00000374943 SCN7AQ01118 1682 aa21.78■■□□□ 1.08
HLA-DQB1-201ENST00000374943 KCNQ2O43526 872 aa21.78■■□□□ 1.08
HLA-DQB1-201ENST00000374943 LRRC24Q50LG9 513 aa21.78■■□□□ 1.08
HLA-DQB1-201ENST00000374943 TICAM2Q86XR7 235 aa21.78■■□□□ 1.08
HLA-DQB1-201ENST00000374943 ZNF594Q96JF6 807 aaPredicted RBP21.78■■□□□ 1.08
HLA-DQB1-201ENST00000374943 AK7Q96M32 723 aa21.78■■□□□ 1.08
HLA-DQB1-201ENST00000374943 HAUS7Q99871 368 aa21.78■■□□□ 1.08
HLA-DQB1-201ENST00000374943 UBN2Q6ZU65 1347 aa21.78■■□□□ 1.08
HLA-DQB1-201ENST00000374943 LY75O60449 1722 aa21.77■■□□□ 1.08
HLA-DQB1-201ENST00000374943 FSD1Q9BTV5 496 aa21.77■■□□□ 1.08
HLA-DQB1-201ENST00000374943 HSP90AA1P07900 732 aaKnown RBP21.76■■□□□ 1.07
HLA-DQB1-201ENST00000374943 CTSWP56202 376 aa21.76■■□□□ 1.07
HLA-DQB1-201ENST00000374943 IFIT5Q13325 482 aaKnown RBP21.76■■□□□ 1.07
HLA-DQB1-201ENST00000374943 ARAP2Q8WZ64 1704 aa21.76■■□□□ 1.07
HLA-DQB1-201ENST00000374943 TAF1LQ8IZX4 1826 aa21.76■■□□□ 1.07
HLA-DQB1-201ENST00000374943 MED23Q9ULK4 1368 aa21.76■■□□□ 1.07
HLA-DQB1-201ENST00000374943 CASZ1Q86V15 1759 aa21.76■■□□□ 1.07
HLA-DQB1-201ENST00000374943 CAMTA2O94983 1202 aa21.75■■□□□ 1.07
HLA-DQB1-201ENST00000374943 TTLL11Q8NHH1 800 aa21.75■■□□□ 1.07
HLA-DQB1-201ENST00000374943 TRMT112Q9UI30 125 aaKnown RBP21.75■■□□□ 1.07
HLA-DQB1-201ENST00000374943 RIC1Q4ADV7 1423 aa21.75■■□□□ 1.07
HLA-DQB1-201ENST00000374943 IRS4O14654 1257 aaPredicted RBP21.75■■□□□ 1.07
HLA-DQB1-201ENST00000374943 PDE8AO60658 829 aa21.75■■□□□ 1.07
HLA-DQB1-201ENST00000374943 NEK4P51957 841 aa21.75■■□□□ 1.07
HLA-DQB1-201ENST00000374943 NMIQ13287 307 aaPredicted RBP21.75■■□□□ 1.07
HLA-DQB1-201ENST00000374943 KCNB2Q92953 911 aa21.75■■□□□ 1.07
HLA-DQB1-201ENST00000374943 PUS3Q9BZE2 481 aaKnown RBP21.75■■□□□ 1.07
HLA-DQB1-201ENST00000374943 CEP126Q9P2H0 1117 aa21.75■■□□□ 1.07
HLA-DQB1-201ENST00000374943 MYH7P12883 1935 aa21.74■■□□□ 1.07
HLA-DQB1-201ENST00000374943 CCDC171Q6TFL3 1326 aa21.74■■□□□ 1.07
HLA-DQB1-201ENST00000374943 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.74■■□□□ 1.07
HLA-DQB1-201ENST00000374943 PARP10Q53GL7 1025 aa21.73■■□□□ 1.07
HLA-DQB1-201ENST00000374943 SYNE4Q8N205 404 aa21.73■■□□□ 1.07
HLA-DQB1-201ENST00000374943 AKAP2Q9Y2D5 859 aa21.73■■□□□ 1.07
HLA-DQB1-201ENST00000374943 SNX14Q9Y5W7 946 aa21.73■■□□□ 1.07
HLA-DQB1-201ENST00000374943 CNTNAP4Q9C0A0 1308 aa21.73■■□□□ 1.07
HLA-DQB1-201ENST00000374943 A0A1B0GUL7 405 aa21.72■■□□□ 1.07
HLA-DQB1-201ENST00000374943 RGL2O15211 777 aa21.72■■□□□ 1.07
HLA-DQB1-201ENST00000374943 FAM227BQ96M60 508 aa21.72■■□□□ 1.07
HLA-DQB1-201ENST00000374943 ATRNO75882 1429 aa21.72■■□□□ 1.07
HLA-DQB1-201ENST00000374943 RAB3GAP1Q15042 981 aa21.72■■□□□ 1.07
HLA-DQB1-201ENST00000374943 TAF7LQ5H9L4 462 aa21.72■■□□□ 1.07
HLA-DQB1-201ENST00000374943 ABCC12Q96J65 1359 aa21.71■■□□□ 1.07
HLA-DQB1-201ENST00000374943 A0A0D9SFI3 127 aa21.71■■□□□ 1.07
HLA-DQB1-201ENST00000374943 ANKRD18BA2A2Z9 1011 aa21.71■■□□□ 1.07
HLA-DQB1-201ENST00000374943 ITGA6P23229 1130 aa21.71■■□□□ 1.07
HLA-DQB1-201ENST00000374943 TIMM10P62072 90 aa21.71■■□□□ 1.07
HLA-DQB1-201ENST00000374943 PTH1RQ03431 593 aa21.71■■□□□ 1.07
HLA-DQB1-201ENST00000374943 NEUROD6Q96NK8 337 aa21.71■■□□□ 1.07
HLA-DQB1-201ENST00000374943 GREM2Q9H772 168 aa21.71■■□□□ 1.07
HLA-DQB1-201ENST00000374943 AKAP11Q9UKA4 1901 aa21.7■■□□□ 1.07
HLA-DQB1-201ENST00000374943 SH3TC1Q8TE82 1336 aa21.7■■□□□ 1.06
HLA-DQB1-201ENST00000374943 MAP4K1Q92918 833 aa21.7■■□□□ 1.06
HLA-DQB1-201ENST00000374943 CWC22Q9HCG8 908 aaKnown RBP21.7■■□□□ 1.06
HLA-DQB1-201ENST00000374943 RIPOR2Q9Y4F9 1068 aa21.7■■□□□ 1.06
HLA-DQB1-201ENST00000374943 SUSD4Q5VX71 490 aa21.69■■□□□ 1.06
HLA-DQB1-201ENST00000374943 KBTBD3Q8NAB2 608 aa21.69■■□□□ 1.06
HLA-DQB1-201ENST00000374943 LINC00116Q8NCU8 138 aa21.69■■□□□ 1.06
HLA-DQB1-201ENST00000374943 EDC3Q96F86 508 aaKnown RBP21.69■■□□□ 1.06
HLA-DQB1-201ENST00000374943 COL24A1Q17RW2 1714 aa21.69■■□□□ 1.06
HLA-DQB1-201ENST00000374943 NECTIN1Q15223 517 aa21.69■■□□□ 1.06
HLA-DQB1-201ENST00000374943 CLEC4GQ6UXB4 293 aa21.69■■□□□ 1.06
HLA-DQB1-201ENST00000374943 GJD4Q96KN9 370 aaPredicted RBP21.69■■□□□ 1.06
HLA-DQB1-201ENST00000374943 DNAJC2Q99543 621 aaKnown RBP21.69■■□□□ 1.06
HLA-DQB1-201ENST00000374943 UTP14AQ9BVJ6 771 aaKnown RBP21.69■■□□□ 1.06
HLA-DQB1-201ENST00000374943 ZNF652Q9Y2D9 606 aa21.69■■□□□ 1.06
HLA-DQB1-201ENST00000374943 RTL9Q8NET4 1388 aa21.68■■□□□ 1.06
HLA-DQB1-201ENST00000374943 HSP90B1P14625 803 aaKnown RBP21.68■■□□□ 1.06
HLA-DQB1-201ENST00000374943 CUL4AQ13619 759 aa21.68■■□□□ 1.06
HLA-DQB1-201ENST00000374943 RASEFQ8IZ41 740 aa21.68■■□□□ 1.06
HLA-DQB1-201ENST00000374943 TMX3Q96JJ7 454 aa21.68■■□□□ 1.06
HLA-DQB1-201ENST00000374943 CCDC85AQ96PX6 553 aaPredicted RBP21.68■■□□□ 1.06
HLA-DQB1-201ENST00000374943 TM6SF1Q9BZW5 370 aa21.68■■□□□ 1.06
HLA-DQB1-201ENST00000374943 ONECUT3O60422 494 aaPredicted RBP21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms