RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 ARID4AP29374 1257 aaPredicted RBP13.55□□□□□ -0.24
PTPN1-201ENST00000371621 DESI2Q9BSY9 194 aa13.55□□□□□ -0.24
PTPN1-201ENST00000371621 LARP1Q6PKG0 1096 aaKnown RBP13.55□□□□□ -0.24
PTPN1-201ENST00000371621 ANKRD44Q8N8A2 993 aa13.55□□□□□ -0.24
PTPN1-201ENST00000371621 FAM204AQ9H8W3 233 aa13.55□□□□□ -0.24
PTPN1-201ENST00000371621 CEP170Q5SW79 1584 aa13.55□□□□□ -0.24
PTPN1-201ENST00000371621 NPM1P06748 294 aaKnown RBP eCLIP13.55□□□□□ -0.24
PTPN1-201ENST00000371621 GUCY2CP25092 1073 aa13.55□□□□□ -0.24
PTPN1-201ENST00000371621 HSPA4P34932 840 aa13.55□□□□□ -0.24
PTPN1-201ENST00000371621 ANAPC15P60006 121 aa13.55□□□□□ -0.24
PTPN1-201ENST00000371621 MMS22LQ6ZRQ5 1243 aa13.55□□□□□ -0.24
PTPN1-201ENST00000371621 C8orf58Q8NAV2 365 aa13.55□□□□□ -0.24
PTPN1-201ENST00000371621 N4BP2L2Q92802 583 aaPredicted RBP13.55□□□□□ -0.24
PTPN1-201ENST00000371621 VEZTQ9HBM0 779 aa13.55□□□□□ -0.24
PTPN1-201ENST00000371621 POTEB2H3BUK9 544 aa13.54□□□□□ -0.24
PTPN1-201ENST00000371621 JADE2Q9NQC1 790 aa13.54□□□□□ -0.24
PTPN1-201ENST00000371621 TCOF1Q13428 1488 aaKnown RBP13.54□□□□□ -0.24
PTPN1-201ENST00000371621 NUP133Q8WUM0 1156 aa13.54□□□□□ -0.24
PTPN1-201ENST00000371621 NEUROD6Q96NK8 337 aa13.54□□□□□ -0.24
PTPN1-201ENST00000371621 BOLA2Q9H3K6 86 aa13.54□□□□□ -0.24
PTPN1-201ENST00000371621 A0A0G2JS52 829 aa13.54□□□□□ -0.24
PTPN1-201ENST00000371621 AMPHP49418 695 aa13.54□□□□□ -0.24
PTPN1-201ENST00000371621 ERC1Q8IUD2 1116 aa13.54□□□□□ -0.24
PTPN1-201ENST00000371621 GPR161Q8N6U8 529 aaKnown RBP13.54□□□□□ -0.24
PTPN1-201ENST00000371621 MBIPQ9NS73 344 aa13.54□□□□□ -0.24
PTPN1-201ENST00000371621 ZNF330Q9Y3S2 320 aaPredicted RBP13.54□□□□□ -0.24
PTPN1-201ENST00000371621 ATP10BO94823 1461 aa13.53□□□□□ -0.24
PTPN1-201ENST00000371621 NFE2L2Q16236 605 aa13.53□□□□□ -0.24
PTPN1-201ENST00000371621 AP1ARQ63HQ0 302 aa13.53□□□□□ -0.24
PTPN1-201ENST00000371621 NFXL1Q6ZNB6 911 aa13.53□□□□□ -0.24
PTPN1-201ENST00000371621 AACSQ86V21 672 aa13.53□□□□□ -0.24
PTPN1-201ENST00000371621 PARD6BQ9BYG5 372 aa13.53□□□□□ -0.24
PTPN1-201ENST00000371621 EIF5P55010 431 aaKnown RBP13.53□□□□□ -0.24
PTPN1-201ENST00000371621 EXOC4Q96A65 974 aa13.53□□□□□ -0.24
PTPN1-201ENST00000371621 RBM33Q96EV2 1170 aaKnown RBP13.53□□□□□ -0.24
PTPN1-201ENST00000371621 POLKQ9UBT6 870 aa13.53□□□□□ -0.24
PTPN1-201ENST00000371621 MARCKSP29966 332 aaPredicted RBP13.53□□□□□ -0.24
PTPN1-201ENST00000371621 PPP1R13BQ96KQ4 1090 aa13.53□□□□□ -0.24
PTPN1-201ENST00000371621 MYO6Q9UM54 1294 aa13.53□□□□□ -0.24
PTPN1-201ENST00000371621 AIMP1Q12904 312 aaKnown RBP13.52□□□□□ -0.24
PTPN1-201ENST00000371621 LEO1Q8WVC0 666 aaPredicted RBP13.52□□□□□ -0.24
PTPN1-201ENST00000371621 CLSTN2Q9H4D0 955 aa13.52□□□□□ -0.24
PTPN1-201ENST00000371621 ODF2LQ9ULJ1 636 aa13.52□□□□□ -0.24
PTPN1-201ENST00000371621 GOLGA6CA6NDK9 693 aa13.52□□□□□ -0.25
PTPN1-201ENST00000371621 GOLGA6L9A6NEM1 432 aa13.52□□□□□ -0.25
PTPN1-201ENST00000371621 EFCAB8A8MWE9 144 aa13.52□□□□□ -0.25
PTPN1-201ENST00000371621 GOLGA6DP0CG33 693 aa13.52□□□□□ -0.25
PTPN1-201ENST00000371621 LONRF3Q496Y0 759 aa13.52□□□□□ -0.25
PTPN1-201ENST00000371621 SULT6B1Q6IMI4 303 aa13.52□□□□□ -0.25
PTPN1-201ENST00000371621 MAATS1Q7Z4T9 603 aa13.52□□□□□ -0.25
PTPN1-201ENST00000371621 BAG1Q99933 345 aaPredicted RBP13.52□□□□□ -0.25
PTPN1-201ENST00000371621 GOLGA6AQ9NYA3 693 aa13.52□□□□□ -0.25
PTPN1-201ENST00000371621 CTAGE9A4FU28 777 aa13.52□□□□□ -0.25
PTPN1-201ENST00000371621 CCT4P50991 539 aaKnown RBP13.52□□□□□ -0.25
PTPN1-201ENST00000371621 CEP85Q6P2H3 762 aa13.52□□□□□ -0.25
PTPN1-201ENST00000371621 ANKRD18AQ8IVF6 992 aa13.52□□□□□ -0.25
PTPN1-201ENST00000371621 NUP88Q99567 741 aaPredicted RBP13.52□□□□□ -0.25
PTPN1-201ENST00000371621 ORC3Q9UBD5 711 aaPredicted RBP13.52□□□□□ -0.25
PTPN1-201ENST00000371621 DDIT3P35638 169 aa13.51□□□□□ -0.25
PTPN1-201ENST00000371621 HSP90AB4PQ58FF6 505 aa13.51□□□□□ -0.25
PTPN1-201ENST00000371621 CCDC121Q6ZUS5 278 aa13.51□□□□□ -0.25
PTPN1-201ENST00000371621 CEP112Q8N8E3 955 aa13.51□□□□□ -0.25
PTPN1-201ENST00000371621 CCDC113Q9H0I3 377 aa13.51□□□□□ -0.25
PTPN1-201ENST00000371621 GUCA1BQ9UMX6 200 aa13.51□□□□□ -0.25
PTPN1-201ENST00000371621 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.51□□□□□ -0.25
PTPN1-201ENST00000371621 VAMP4O75379 141 aa13.51□□□□□ -0.25
PTPN1-201ENST00000371621 CCDC175P0C221 793 aa13.51□□□□□ -0.25
PTPN1-201ENST00000371621 CEP85LQ5SZL2 805 aa13.51□□□□□ -0.25
PTPN1-201ENST00000371621 CLEC17AQ6ZS10 378 aa13.51□□□□□ -0.25
PTPN1-201ENST00000371621 AFAP1Q8N556 730 aa13.51□□□□□ -0.25
PTPN1-201ENST00000371621 MRPL50Q8N5N7 158 aaKnown RBP13.51□□□□□ -0.25
PTPN1-201ENST00000371621 FBXW10Q5XX13 1052 aa13.51□□□□□ -0.25
PTPN1-201ENST00000371621 RALYLQ86SE5 291 aaKnown RBP13.51□□□□□ -0.25
PTPN1-201ENST00000371621 TADA2BQ86TJ2 420 aa13.51□□□□□ -0.25
PTPN1-201ENST00000371621 FCHSD2O94868 740 aa13.5□□□□□ -0.25
PTPN1-201ENST00000371621 EFCAB13Q8IY85 973 aa13.5□□□□□ -0.25
PTPN1-201ENST00000371621 RSRC1Q96IZ7 334 aaKnown RBP13.5□□□□□ -0.25
PTPN1-201ENST00000371621 BAIAP2L1Q9UHR4 511 aa13.5□□□□□ -0.25
PTPN1-201ENST00000371621 AK9Q5TCS8 1911 aa13.5□□□□□ -0.25
PTPN1-201ENST00000371621 ABCC11Q96J66 1382 aa13.5□□□□□ -0.25
PTPN1-201ENST00000371621 A0A087WUV0 522 aaPredicted RBP13.5□□□□□ -0.25
PTPN1-201ENST00000371621 ATP1A2P50993 1020 aa13.5□□□□□ -0.25
PTPN1-201ENST00000371621 ADKP55263 362 aaKnown RBP13.5□□□□□ -0.25
PTPN1-201ENST00000371621 HLTFQ14527 1009 aaKnown RBP eCLIP13.5□□□□□ -0.25
PTPN1-201ENST00000371621 CCDC158Q5M9N0 1113 aa13.5□□□□□ -0.25
PTPN1-201ENST00000371621 FMNL3Q8IVF7 1028 aa13.5□□□□□ -0.25
PTPN1-201ENST00000371621 CCDC8Q9H0W5 538 aaPredicted RBP13.5□□□□□ -0.25
PTPN1-201ENST00000371621 ELP1O95163 1332 aa13.5□□□□□ -0.25
PTPN1-201ENST00000371621 ZMYND10O75800 440 aa13.5□□□□□ -0.25
PTPN1-201ENST00000371621 TRDNQ13061 729 aa13.5□□□□□ -0.25
PTPN1-201ENST00000371621 RRS1Q15050 365 aaKnown RBP13.5□□□□□ -0.25
PTPN1-201ENST00000371621 WASHC4Q2M389 1173 aa13.5□□□□□ -0.25
PTPN1-201ENST00000371621 PNMA8AQ86V59 439 aaPredicted RBP13.5□□□□□ -0.25
PTPN1-201ENST00000371621 GOLGA6L10A0A0M3HER8 536 aa13.49□□□□□ -0.25
PTPN1-201ENST00000371621 HPDP32754 393 aaPredicted RBP13.49□□□□□ -0.25
PTPN1-201ENST00000371621 C11orf57Q6ZUT1 292 aaPredicted RBP13.49□□□□□ -0.25
PTPN1-201ENST00000371621 TBC1D31Q96DN5 1066 aa13.49□□□□□ -0.25
PTPN1-201ENST00000371621 TACO1Q9BSH4 297 aaKnown RBP13.49□□□□□ -0.25
PTPN1-201ENST00000371621 MTMR6Q9Y217 621 aa13.49□□□□□ -0.25
PTPN1-201ENST00000371621 HGSO14964 777 aaPredicted RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms