RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 KCNG4Q8TDN1 519 aa8.33□□□□□ -1.08
SYNE1-208ENST00000367256 SELENOOQ9BVL4 669 aa8.33□□□□□ -1.08
SYNE1-208ENST00000367256 TPD52P55327 224 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-208ENST00000367256 TTLL12Q14166 644 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-208ENST00000367256 CEP57Q86XR8 500 aa8.32□□□□□ -1.08
SYNE1-208ENST00000367256 OGFRQ9NZT2 677 aa8.32□□□□□ -1.08
SYNE1-208ENST00000367256 ODF2LQ9ULJ1 636 aa8.32□□□□□ -1.08
SYNE1-208ENST00000367256 CCT2P78371 535 aaKnown RBP8.32□□□□□ -1.08
SYNE1-208ENST00000367256 FAM69CQ0P6D2 419 aa8.32□□□□□ -1.08
SYNE1-208ENST00000367256 RNF216Q9NWF9 866 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-208ENST00000367256 IFIT5Q13325 482 aaKnown RBP8.32□□□□□ -1.08
SYNE1-208ENST00000367256 TXNDC2Q86VQ3 553 aa8.32□□□□□ -1.08
SYNE1-208ENST00000367256 THOC2Q8NI27 1593 aaKnown RBP8.32□□□□□ -1.08
SYNE1-208ENST00000367256 WDHD1O75717 1129 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-208ENST00000367256 RPUSD2Q8IZ73 545 aaKnown RBP8.32□□□□□ -1.08
SYNE1-208ENST00000367256 CCDC82Q8N4S0 544 aa8.32□□□□□ -1.08
SYNE1-208ENST00000367256 ZBTB16Q05516 673 aa8.32□□□□□ -1.08
SYNE1-208ENST00000367256 CCDC63Q8NA47 563 aa8.32□□□□□ -1.08
SYNE1-208ENST00000367256 EVI5LQ96CN4 794 aa8.32□□□□□ -1.08
SYNE1-208ENST00000367256 MPHOSPH6Q99547 160 aaKnown RBP8.32□□□□□ -1.08
SYNE1-208ENST00000367256 TTC31Q49AM3 519 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-208ENST00000367256 CCDC102BQ68D86 513 aa8.32□□□□□ -1.08
SYNE1-208ENST00000367256 CCDC144CPQ8IYA2 1237 aa8.32□□□□□ -1.08
SYNE1-208ENST00000367256 RPGRQ92834 1020 aaKnown RBP8.32□□□□□ -1.08
SYNE1-208ENST00000367256 CTAGE15A4D2H0 777 aa8.32□□□□□ -1.08
SYNE1-208ENST00000367256 CTAGE8P0CG41 777 aa8.32□□□□□ -1.08
SYNE1-208ENST00000367256 CFAP70Q5T0N1 1121 aa8.32□□□□□ -1.08
SYNE1-208ENST00000367256 CTAGE6Q86UF2 777 aa8.32□□□□□ -1.08
SYNE1-208ENST00000367256 CTAGE4Q8IX94 777 aa8.32□□□□□ -1.08
SYNE1-208ENST00000367256 SSH1Q8WYL5 1049 aa8.32□□□□□ -1.08
SYNE1-208ENST00000367256 SELENOSQ9BQE4 189 aa8.32□□□□□ -1.08
SYNE1-208ENST00000367256 TTF1Q15361 905 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-208ENST00000367256 CCDC50Q8IVM0 306 aa8.31□□□□□ -1.08
SYNE1-208ENST00000367256 RSRC1Q96IZ7 334 aaKnown RBP8.31□□□□□ -1.08
SYNE1-208ENST00000367256 MMRN2Q9H8L6 949 aa8.31□□□□□ -1.08
SYNE1-208ENST00000367256 IFIT3O14879 490 aaKnown RBP8.31□□□□□ -1.08
SYNE1-208ENST00000367256 ATP2A1O14983 1001 aa8.31□□□□□ -1.08
SYNE1-208ENST00000367256 CYLC1P35663 651 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-208ENST00000367256 IQGAP2Q13576 1575 aa8.31□□□□□ -1.08
SYNE1-208ENST00000367256 N4BP3O15049 544 aa8.31□□□□□ -1.08
SYNE1-208ENST00000367256 AKR1B10O60218 316 aa8.31□□□□□ -1.08
SYNE1-208ENST00000367256 GABPB1Q06547 395 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-208ENST00000367256 NBPF8Q3BBV2 869 aa8.31□□□□□ -1.08
SYNE1-208ENST00000367256 TBC1D9Q6ZT07 1266 aa8.31□□□□□ -1.08
SYNE1-208ENST00000367256 ZNF354CQ86Y25 554 aa8.31□□□□□ -1.08
SYNE1-208ENST00000367256 ARHGAP45Q92619 1136 aa8.31□□□□□ -1.08
SYNE1-208ENST00000367256 CCDC77Q9BR77 488 aa8.31□□□□□ -1.08
SYNE1-208ENST00000367256 BOLA2Q9H3K6 86 aa8.31□□□□□ -1.08
SYNE1-208ENST00000367256 PRDM11Q9NQV5 511 aa8.31□□□□□ -1.08
SYNE1-208ENST00000367256 STAT6P42226 847 aa8.31□□□□□ -1.08
SYNE1-208ENST00000367256 METAP2P50579 478 aaKnown RBP eCLIP8.31□□□□□ -1.08
SYNE1-208ENST00000367256 USP37Q86T82 979 aa8.31□□□□□ -1.08
SYNE1-208ENST00000367256 MICU3Q86XE3 530 aa8.31□□□□□ -1.08
SYNE1-208ENST00000367256 MIS18AQ9NYP9 233 aa8.31□□□□□ -1.08
SYNE1-208ENST00000367256 KIF5AQ12840 1032 aa8.31□□□□□ -1.08
SYNE1-208ENST00000367256 B4GALNT4Q76KP1 1039 aa8.31□□□□□ -1.08
SYNE1-208ENST00000367256 FMNL3Q8IVF7 1028 aa8.31□□□□□ -1.08
SYNE1-208ENST00000367256 MKRN1Q9UHC7 482 aaKnown RBP8.31□□□□□ -1.08
SYNE1-208ENST00000367256 IDEP14735 1019 aa8.31□□□□□ -1.08
SYNE1-208ENST00000367256 PDE4BQ07343 736 aa8.31□□□□□ -1.08
SYNE1-208ENST00000367256 CWC25Q9NXE8 425 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-208ENST00000367256 NUTM2BA6NNL0 878 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-208ENST00000367256 NUTM2EB1AL46 878 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-208ENST00000367256 ZNF213O14771 459 aa8.31□□□□□ -1.08
SYNE1-208ENST00000367256 SKILP12757 684 aa8.31□□□□□ -1.08
SYNE1-208ENST00000367256 HMGXB3Q12766 1538 aa8.31□□□□□ -1.08
SYNE1-208ENST00000367256 TMEM67Q5HYA8 995 aa8.31□□□□□ -1.08
SYNE1-208ENST00000367256 DUSP27Q5VZP5 1158 aa8.31□□□□□ -1.08
SYNE1-208ENST00000367256 NUTM2AQ8IVF1 878 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-208ENST00000367256 WDR78Q5VTH9 848 aa8.31□□□□□ -1.08
SYNE1-208ENST00000367256 ZNF444Q8N0Y2 327 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-208ENST00000367256 TMOD3Q9NYL9 352 aa8.31□□□□□ -1.08
SYNE1-208ENST00000367256 RPRD2Q5VT52 1461 aaKnown RBP8.3□□□□□ -1.08
SYNE1-208ENST00000367256 CFAP157Q5JU67 520 aa8.3□□□□□ -1.08
SYNE1-208ENST00000367256 CIB2O75838 187 aa8.3□□□□□ -1.08
SYNE1-208ENST00000367256 ZSCAN22P10073 491 aaPredicted RBP8.3□□□□□ -1.08
SYNE1-208ENST00000367256 ATL3Q6DD88 541 aa8.3□□□□□ -1.08
SYNE1-208ENST00000367256 MFSD6Q6ZSS7 791 aa8.3□□□□□ -1.08
SYNE1-208ENST00000367256 SAMD15Q9P1V8 674 aa8.3□□□□□ -1.08
SYNE1-208ENST00000367256 RBM27Q9P2N5 1060 aaKnown RBP8.3□□□□□ -1.08
SYNE1-208ENST00000367256 XRCC6P12956 609 aaKnown RBP eCLIP8.3□□□□□ -1.08
SYNE1-208ENST00000367256 SMC1BQ8NDV3 1235 aa8.3□□□□□ -1.08
SYNE1-208ENST00000367256 MCM6Q14566 821 aa8.3□□□□□ -1.08
SYNE1-208ENST00000367256 RRAGBQ5VZM2 374 aa8.3□□□□□ -1.08
SYNE1-208ENST00000367256 MRVI1Q9Y6F6 885 aa8.3□□□□□ -1.08
SYNE1-208ENST00000367256 MYH10P35580 1976 aa8.3□□□□□ -1.08
SYNE1-208ENST00000367256 TTC22Q5TAA0 569 aa8.3□□□□□ -1.08
SYNE1-208ENST00000367256 MCM10Q7L590 875 aa8.3□□□□□ -1.08
SYNE1-208ENST00000367256 ATRIPQ8WXE1 791 aa8.3□□□□□ -1.08
SYNE1-208ENST00000367256 ATP2A2P16615 1042 aaKnown RBP8.3□□□□□ -1.08
SYNE1-208ENST00000367256 RGS22Q8NE09 1264 aa8.3□□□□□ -1.08
SYNE1-208ENST00000367256 DNMBPQ6XZF7 1577 aa8.3□□□□□ -1.08
SYNE1-208ENST00000367256 NDC80O14777 642 aa8.3□□□□□ -1.08
SYNE1-208ENST00000367256 KIF3CO14782 793 aa8.3□□□□□ -1.08
SYNE1-208ENST00000367256 CAPN2P17655 700 aa8.3□□□□□ -1.08
SYNE1-208ENST00000367256 SYKP43405 635 aa8.3□□□□□ -1.08
SYNE1-208ENST00000367256 CCDC14Q49A88 953 aa8.3□□□□□ -1.08
SYNE1-208ENST00000367256 CYB5RLQ6IPT4 315 aa8.3□□□□□ -1.08
SYNE1-208ENST00000367256 KAT14Q9H8E8 782 aa8.3□□□□□ -1.08
SYNE1-208ENST00000367256 ASXL1Q8IXJ9 1541 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms