RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 ZGPATQ8N5A5 531 aaKnown RBP13.47□□□□□ -0.25
SYNE1-204ENST00000367248 DCTPP1Q9H773 170 aa13.47□□□□□ -0.25
SYNE1-204ENST00000367248 ZNHIT6Q9NWK9 470 aaKnown RBP13.47□□□□□ -0.25
SYNE1-204ENST00000367248 NEBLO76041 1014 aa13.47□□□□□ -0.25
SYNE1-204ENST00000367248 KIF5BP33176 963 aa13.47□□□□□ -0.25
SYNE1-204ENST00000367248 SSR1P43307 286 aaKnown RBP13.47□□□□□ -0.25
SYNE1-204ENST00000367248 CEP85Q6P2H3 762 aa13.47□□□□□ -0.25
SYNE1-204ENST00000367248 TARBP1Q13395 1621 aaKnown RBP13.47□□□□□ -0.25
SYNE1-204ENST00000367248 MAGI3Q5TCQ9 1506 aa13.46□□□□□ -0.25
SYNE1-204ENST00000367248 SLC9C2Q5TAH2 1124 aa13.46□□□□□ -0.25
SYNE1-204ENST00000367248 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.46□□□□□ -0.25
SYNE1-204ENST00000367248 ZNF804AQ7Z570 1209 aa13.46□□□□□ -0.25
SYNE1-204ENST00000367248 NLRP5P59047 1200 aa13.46□□□□□ -0.25
SYNE1-204ENST00000367248 LGR6Q9HBX8 967 aa13.46□□□□□ -0.25
SYNE1-204ENST00000367248 HCLS1P14317 486 aaPredicted RBP13.46□□□□□ -0.25
SYNE1-204ENST00000367248 SSRP1Q08945 709 aaKnown RBP13.46□□□□□ -0.25
SYNE1-204ENST00000367248 MPNDQ8N594 471 aa13.46□□□□□ -0.25
SYNE1-204ENST00000367248 CAGE1Q8TC20 777 aa13.46□□□□□ -0.25
SYNE1-204ENST00000367248 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.46□□□□□ -0.25
SYNE1-204ENST00000367248 PARP10Q53GL7 1025 aa13.46□□□□□ -0.26
SYNE1-204ENST00000367248 NAA16Q6N069 864 aaPredicted RBP13.46□□□□□ -0.26
SYNE1-204ENST00000367248 MICU3Q86XE3 530 aa13.46□□□□□ -0.26
SYNE1-204ENST00000367248 BRF1Q92994 677 aa13.46□□□□□ -0.26
SYNE1-204ENST00000367248 TMEM94Q12767 1356 aa13.46□□□□□ -0.26
SYNE1-204ENST00000367248 TBC1D2Q9BYX2 928 aa13.46□□□□□ -0.26
SYNE1-204ENST00000367248 CKAP2LQ8IYA6 745 aa13.45□□□□□ -0.26
SYNE1-204ENST00000367248 KAT14Q9H8E8 782 aa13.45□□□□□ -0.26
SYNE1-204ENST00000367248 SH3TC1Q8TE82 1336 aa13.45□□□□□ -0.26
SYNE1-204ENST00000367248 G2E3Q7L622 706 aa13.45□□□□□ -0.26
SYNE1-204ENST00000367248 PPFIBP1Q86W92 1011 aa13.45□□□□□ -0.26
SYNE1-204ENST00000367248 PLBD2Q8NHP8 589 aa13.45□□□□□ -0.26
SYNE1-204ENST00000367248 ZBTB40Q9NUA8 1239 aa13.45□□□□□ -0.26
SYNE1-204ENST00000367248 ORC3Q9UBD5 711 aaPredicted RBP13.45□□□□□ -0.26
SYNE1-204ENST00000367248 SLC52A2Q9HAB3 445 aa13.45□□□□□ -0.26
SYNE1-204ENST00000367248 TTC41PQ6P2S7 1318 aa13.45□□□□□ -0.26
SYNE1-204ENST00000367248 TSPY3P0CV98 308 aa13.44□□□□□ -0.26
SYNE1-204ENST00000367248 TSPY8P0CW00 308 aa13.44□□□□□ -0.26
SYNE1-204ENST00000367248 LARGE2Q8N3Y3 721 aa13.44□□□□□ -0.26
SYNE1-204ENST00000367248 CCDC173Q0VFZ6 552 aa13.44□□□□□ -0.26
SYNE1-204ENST00000367248 ARHGAP27Q6ZUM4 889 aa13.44□□□□□ -0.26
SYNE1-204ENST00000367248 MIGA1Q8NAN2 632 aa13.44□□□□□ -0.26
SYNE1-204ENST00000367248 IL27Q8NEV9 243 aa13.44□□□□□ -0.26
SYNE1-204ENST00000367248 CCDC12Q8WUD4 166 aaPredicted RBP13.44□□□□□ -0.26
SYNE1-204ENST00000367248 RAB34Q9BZG1 259 aa13.44□□□□□ -0.26
SYNE1-204ENST00000367248 MAP3K11Q16584 847 aa13.44□□□□□ -0.26
SYNE1-204ENST00000367248 DEF6Q9H4E7 631 aa13.44□□□□□ -0.26
SYNE1-204ENST00000367248 SLC4A4Q9Y6R1 1079 aa13.44□□□□□ -0.26
SYNE1-204ENST00000367248 SBNO2Q9Y2G9 1366 aa13.44□□□□□ -0.26
SYNE1-204ENST00000367248 TRIM37O94972 964 aa13.44□□□□□ -0.26
SYNE1-204ENST00000367248 MCM5P33992 734 aa13.44□□□□□ -0.26
SYNE1-204ENST00000367248 FAM89AQ96GI7 184 aa13.44□□□□□ -0.26
SYNE1-204ENST00000367248 ANKRD2Q9GZV1 360 aa13.44□□□□□ -0.26
SYNE1-204ENST00000367248 MLH3Q9UHC1 1453 aa13.44□□□□□ -0.26
SYNE1-204ENST00000367248 H0YIN7 160 aa13.43□□□□□ -0.26
SYNE1-204ENST00000367248 CBFA2T2O43439 604 aa13.43□□□□□ -0.26
SYNE1-204ENST00000367248 UFL1O94874 794 aa13.43□□□□□ -0.26
SYNE1-204ENST00000367248 RXRBP28702 533 aa13.43□□□□□ -0.26
SYNE1-204ENST00000367248 MCMDC2Q4G0Z9 681 aa13.43□□□□□ -0.26
SYNE1-204ENST00000367248 DNAJC10Q8IXB1 793 aa13.43□□□□□ -0.26
SYNE1-204ENST00000367248 ZNF496Q96IT1 587 aaPredicted RBP13.43□□□□□ -0.26
SYNE1-204ENST00000367248 CCP110O43303 1012 aa13.43□□□□□ -0.26
SYNE1-204ENST00000367248 ESR2Q92731 530 aa13.43□□□□□ -0.26
SYNE1-204ENST00000367248 RBM17Q96I25 401 aaKnown RBP13.43□□□□□ -0.26
SYNE1-204ENST00000367248 MAGI2Q86UL8 1455 aa13.43□□□□□ -0.26
SYNE1-204ENST00000367248 METAP2P50579 478 aaKnown RBP eCLIP13.43□□□□□ -0.26
SYNE1-204ENST00000367248 NOM1Q5C9Z4 860 aaKnown RBP13.43□□□□□ -0.26
SYNE1-204ENST00000367248 ESYT1Q9BSJ8 1104 aa13.43□□□□□ -0.26
SYNE1-204ENST00000367248 SP4Q02446 784 aa13.43□□□□□ -0.26
SYNE1-204ENST00000367248 PAG1Q9NWQ8 432 aa13.43□□□□□ -0.26
SYNE1-204ENST00000367248 RBM8AQ9Y5S9 174 aaKnown RBP13.43□□□□□ -0.26
SYNE1-204ENST00000367248 ABCA8O94911 1581 aa13.42□□□□□ -0.26
SYNE1-204ENST00000367248 SMC5Q8IY18 1101 aa13.42□□□□□ -0.26
SYNE1-204ENST00000367248 KRT23Q9C075 422 aa13.42□□□□□ -0.26
SYNE1-204ENST00000367248 METP08581 1390 aa13.42□□□□□ -0.26
SYNE1-204ENST00000367248 PLEKHG1Q9ULL1 1385 aa13.42□□□□□ -0.26
SYNE1-204ENST00000367248 EYA3Q99504 573 aa13.42□□□□□ -0.26
SYNE1-204ENST00000367248 METTL22Q9BUU2 404 aaPredicted RBP13.42□□□□□ -0.26
SYNE1-204ENST00000367248 TMEM266Q2M3C6 531 aa13.42□□□□□ -0.26
SYNE1-204ENST00000367248 CCDC87Q9NVE4 849 aa13.42□□□□□ -0.26
SYNE1-204ENST00000367248 TFCP2Q12800 502 aa13.42□□□□□ -0.26
SYNE1-204ENST00000367248 ENOX2Q16206 610 aaKnown RBP13.42□□□□□ -0.26
SYNE1-204ENST00000367248 SPC24Q8NBT2 197 aa13.42□□□□□ -0.26
SYNE1-204ENST00000367248 DRC1Q96MC2 740 aa13.42□□□□□ -0.26
SYNE1-204ENST00000367248 LUC7LQ9NQ29 371 aaKnown RBP13.42□□□□□ -0.26
SYNE1-204ENST00000367248 ARGLU1Q9NWB6 273 aaPredicted RBP13.42□□□□□ -0.26
SYNE1-204ENST00000367248 KLF18A0A0U1RQI7 1052 aa13.42□□□□□ -0.26
SYNE1-204ENST00000367248 EYA2O00167 538 aa13.42□□□□□ -0.26
SYNE1-204ENST00000367248 TBC1D32Q96NH3 1257 aa13.42□□□□□ -0.26
SYNE1-204ENST00000367248 TRIM35Q9UPQ4 493 aa13.41□□□□□ -0.26
SYNE1-204ENST00000367248 WTAPQ15007 396 aa13.41□□□□□ -0.26
SYNE1-204ENST00000367248 ZYXQ15942 572 aaKnown RBP13.41□□□□□ -0.26
SYNE1-204ENST00000367248 A1BGP04217 495 aa13.41□□□□□ -0.26
SYNE1-204ENST00000367248 SSFA2P28290 1259 aa13.41□□□□□ -0.26
SYNE1-204ENST00000367248 EIF6P56537 245 aaKnown RBP13.41□□□□□ -0.26
SYNE1-204ENST00000367248 CCDC178Q5BJE1 867 aa13.41□□□□□ -0.26
SYNE1-204ENST00000367248 CNNM2Q9H8M5 875 aa13.41□□□□□ -0.26
SYNE1-204ENST00000367248 SMTNL1A8MU46 457 aa13.41□□□□□ -0.26
SYNE1-204ENST00000367248 GJB2P29033 226 aa13.41□□□□□ -0.26
SYNE1-204ENST00000367248 CCDC191Q8NCU4 936 aa13.41□□□□□ -0.26
SYNE1-204ENST00000367248 PBRM1Q86U86 1689 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms